Team’s publications

Head Bernard HENRISSAT

2018

Metagenomic Assembly and Prokaryotic Metagenome-Assembled Genome Sequences from the Northern Gulf of Mexico "Dead Zone". (2018)

Thrash JC, Baker BJ, Seitz KW, Temperton B, Campbell LG, Rabalais NN, Henrissat B, Mason OU.

Microbiol Resour Announc 7 pii: e01033-18 PMID:30533941
Proteomic dissection of the cellulolytic machineries used by soil-dwelling Bacteroidetes (2018)

Taillefer M, Arntzen MO, Henrissat B, Pope PB, Larsbrink J.

mSystems 3 pii: e00240-18 PMID:30505945
Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids. (2018)

Cenci U, Sibbald SJ, Curtis BA, Kamikawa R, Eme L, Moog D, Henrissat B, Marechal E, Chabi M, Djemiel C, Roger AJ, Kim E, Archibald JM.

BMC Biol 16 137 PMID:30482201
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle. (2018)

Murat C, Payen T, Noel B, Kuo A, Morin E, Chen J, Kohler A, Krizsan K, Balestrini R, Da Silva C, Montanini B, Hainaut M, Levati E, Barry KW, Belfiori B, Cichocki N, Clum A, Dockter RB, Fauchery L, Guy J, Iotti M, Le Tacon F, Lindquist EA, Lipzen A, Malagnac F, Mello A, Molinier V, Miyauchi S, Poulain J, Riccioni C, Rubini A, Sitrit Y, Splivallo R, Traeger S, Wang M, Zifcakova L, Wipf D, Zambonelli A, Paolocci F, Nowrousian M, Ottonello S, Baldrian P, Spatafora JW, Henrissat B, Nagy LG, Aury JM, Wincker P, Grigoriev IV, Bonfante P, Martin FM.

Nat Ecol Evol 2 1956-1965 PMID:30420746
The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet. (2018)

Grum-Grzhimaylo AA, Falkoski DL, van den Heuvel J, Valero-Jimenez CA, Min B, Choi IG, Lipzen A, Daum CG, Aanen DK, Tsang A, Henrissat B, Bilanenko EN, de Vries RP, van Kan JAL, Grigoriev IV, Debets AJM.

Mol Ecol in press PMID:30368956
Analysis of carbohydrate-active enzymes in Thermogemmatispora sp. strain T81 reveals carbohydrate degradation ability. (2018)

Tomazini A Jr, Lal S, Munir R, Stott M, Henrissat B, Polikarpov I, Sparling R, Levin DB.

Can J Microbiol 64 1-12 PMID:30338698
A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation. (2018)

Cartmell A, Munoz-Munoz J, Briggs JA, Ndeh DA, Lowe EC, Basle A, Terrapon N, Stott K, Heunis T, Gray J, Yu L, Dupree P, Fernandes PZ, Shah S, Williams SJ, Labourel A, Trost M, Henrissat B, Gilbert HJ.

Nat Microbiol 3 1314-1326 PMID:30349080
Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri. (2018)

Vesth TC, Nybo JL, Theobald S, Frisvad JC, Larsen TO, Nielsen KF, Hoof JB, Brandl J, Salamov A, Riley R, Gladden JM, Phatale P, Nielsen MT, Lyhne EK, Kogle ME, Strasser K, McDonnell E, Barry K, Clum A, Chen C, LaButti K, Haridas S, Nolan M, Sandor L, Kuo A, Lipzen A, Hainaut M, Drula E, Tsang A, Magnuson JK, Henrissat B, Wiebenga A, Simmons BA, Makela MR, de Vries RP, Grigoriev IV, Mortensen UH, Baker SE, Andersen MR.

Nat Genet 50 1688-1695 PMID:30349117
From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus. (2018)

Kunath BJ, Delogu F, Naas AE, Arntzen MO, Eijsink VGH, Henrissat B, Hvidsten TR, Pope PB.

ISME J in press PMID:30315317
Leveraging single-cell genomics to expand the fungal tree of life. (2018)

Ahrendt SR, Quandt CA, Ciobanu D, Clum A, Salamov A, Andreopoulos B, Cheng JF, Woyke T, Pelin A, Henrissat B, Reynolds NK, Benny GL, Smith ME, James TY, Grigoriev IV.

Nat Microbiol 3 1417-1428 PMID:30297742
The human gut microbe Bacteroides thetaiotaomicron encodes the founding member of a novel glycosaminoglycan-degrading polysaccharide lyase family PL29. (2018)

Ndeh D, Munoz-Munoz J, Cartmell A, Bulmer D, Wills C, Henrissat B, Gray J.

J Biol Chem 293 17906-17916 PMID:30262663
Functional metagenomics identifies an exosialidase with an inverting catalytic mechanism that defines a new glycoside hydrolase family (GH156). (2018)

Chuzel L, Ganatra MB, Rapp E, Henrissat B, Taron CH.

J Biol Chem 293 18138-18150 PMID:30249617
Rapid divergence of genome architectures following the origin of an ectomycorrhizal symbiosis in the genus Amanita. (2018)

Hess J, Skrede I, De Mares MC, Hainaut M, Henrissat B, Pringle A.

Mol Biol Evol 35 2786-2804 PMID:30239843
Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times. (2018)

Liang X, Whitham JM, Holwerda EK, Shao X, Tian L, Wu YW, Lombard V, Henrissat B, Klingeman DM, Yang ZK, Podar M, Richard TL, Elkins JG, Brown SD, Lynd LR.

Biotechnol Biofuels 11 243 PMID:30202438
Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass. (2018)

Miyauchi S, Rancon A, Drula E, Hage H, Chaduli D, Favel A, Grisel S, Henrissat B, Herpoel-Gimbert I, Ruiz-Duenas FJ, Chevret D, Hainaut M, Lin J, Wang M, Pangilinan J, Lipzen A, Lesage-Meessen L, Navarro D, Riley R, Grigoriev IV, Zhou S, Raouche S, Rosso MN.

Biotechnol Biofuels 11 201 PMID:30061923
Production of alpha-1,3-L-arabinofuranosidase active on substituted xylan does not improve compost degradation by Agaricus bisporus. (2018)

Vos AM, Jurak E, de Gijsel P, Ohm RA, Henrissat B, Lugones LG, Kabel MA, Wosten HAB.

PLoS One 13 e0201090 PMID:30040824
Genome Sequencing and analyses of Two Marine Fungi from the North Sea Unraveled a Plethora of Novel Biosynthetic Gene Clusters. (2018)

Kumar A, Sorensen JL, Hansen FT, Arvas M, Syed MF, Hassan L, Benz JP, Record E, Henrissat B, Poggeler S, Kempken F.

Sci Rep 8 10187 PMID:29976990
Talaromyces borbonicus, sp. nov., a novel fungus from biodegraded Arundo donax with potential abilities in lignocellulose conversion. (2018)

Varriale S, Houbraken J, Granchi Z, Pepe O, Cerullo G, Ventorino V, Chin-A-Woeng T, Meijer M, Riley R, Grigoriev IV, Henrissat B, de Vries RP, Faraco V.

Mycologia 110 316-324 PMID:29843575
Broad genomic sampling reveals a smut pathogenic ancestry of the fungal clade Ustilaginomycotina. (2018)

Kijpornyongpan T, Mondo SJ, Barry K, Sandor L, Lee J, Lipzen A, Pangilinan J, LaButti K, Hainaut M, Henrissat B, Grigoriev IV, Spatafora JW, Aime MC.

Mol Biol Evol 35 1840-1854 PMID:29771364
Ancient acquisition of "alginate utilization loci" by human gut microbiota. (2018)

Mathieu S, Touvrey-Loiodice M, Poulet L, Drouillard S, Vincentelli R, Henrissat B, Skjak-Braek G, Helbert W.

Sci Rep 8 8075 PMID:29795267
Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi. (2018)

Knapp DG, Nemeth JB, Barry K, Hainaut M, Henrissat B, Johnson J, Kuo A, Lim JHP, Lipzen A, Nolan M, Ohm RA, Tamas L, Grigoriev IV, Spatafora JW, Nagy LG, Kovacs GM.

Sci Rep 8 6321 PMID:29679020
Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts. (2018)

Druzhinina IS, Chenthamara K, Zhang J, Atanasova L, Yang D, Miao Y, Rahimi MJ, Grujic M, Cai F, Pourmehdi S, Salim KA, Pretzer C, Kopchinskiy AG, Henrissat B, Kuo A, Hundley H, Wang M, Aerts A, Salamov A, Lipzen A, LaButti K, Barry K, Grigoriev IV, Shen Q, Kubicek CP.

PLoS Genet 14 e1007322 PMID:29630596
Draft genome sequence of the basidiomycete white-rot fungus Phlebia centrifuga (2018)

Makela MR, Peng M, Granchi Z, Chin-A-Woeng T, Hegi R, van Pelt SI, Ahrendt S, Riley R, Hainaut M, Henrissat B, Grigoriev IV, de Vries RP, Hilden KS.

Genome Announc 6 e01414-17 PMID:29622620
The ectomycorrhizal basidiomycete Laccaria bicolor releases a secreted beta-1,4 endoglucanase that plays a key role in symbiosis development. (2018)

Zhang F, Anasontzis GE, Labourel A, Champion C, Haon M, Kemppainen M, Commun C, Deveau A, Pardo A, Veneault-Fourrey C, Kohler A, Rosso MN, Henrissat B, Berrin JG, Martin F.

New Phytol 220 1309-1321 PMID:29624684
Glycosyltransferase genes that cause monogenic congenital disorders of glycosylation are distinct from glycosyltransferase genes associated with complex diseases. (2018)

Joshi HJ, Hansen L, Narimatsu Y, Freeze HH, Henrissat B, Bennett E, Wandall HH, Clausen H, Schjoldager KT.

Glycobiology 28 284-294 PMID:29579191
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. (2018)

Seshadri R, Leahy SC, Attwood GT, Teh KH, Lambie SC, Cookson AL, Eloe-Fadrosh EA, Pavlopoulos GA, Hadjithomas M, Varghese NJ, Paez-Espino D, Perry R, Henderson G, Creevey CJ, Terrapon N, Lapebie P, Drula E, Lombard V, Rubin E, Kyrpides NC, Henrissat B, Woyke T, Ivanova NN, Kelly WJ.

Nat Biotechnol 36 359-367 PMID:29553575
High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis. (2018)

Chen ECH, Morin E, Beaudet D, Noel J, Yildirir G, Ndikumana S, Charron P, St-Onge C, Giorgi J, Kruger M, Marton T, Ropars J, Grigoriev IV, Hainaut M, Henrissat B, Roux C, Martin F, Corradi N.

New Phytol 220 1161-1171 PMID:29355972
An ancient family of lytic polysaccharide monooxygenases with roles in arthropod development and biomass digestion. (2018)

Sabbadin F, Hemsworth GR, Ciano L, Henrissat B, Dupree P, Tryfona T, Marques RDS, Sweeney ST, Besser K, Elias L, Pesante G, Li Y, Dowle AA, Bates R, Gomez LD, Simister R, Davies GJ, Walton PH, Bruce NC, McQueen-Mason SJ.

Nat Commun 9 756 PMID:29472725
A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). (2018)

Schoville SD, Chen YH, Andersson MN, Benoit JB, Bhandari A, Bowsher JH, Brevik K, Cappelle K, Chen MM, Childers AK, Childers C, Christiaens O, Clements J, Didion EM, Elpidina EN, Engsontia P, Friedrich M, Garcia-Robles I, Gibbs RA, Goswami C, Grapputo A, Gruden K, Grynberg M, Henrissat B, Jennings EC, Jones JW, Kalsi M, Khan SA, Kumar A,Li F, Lombard V, Ma X, Martynov A, Miller NJ, Mitchell RF, Munoz-Torres M, Muszewska A, Oppert B, Palli SR, Panfilio KA, Pauchet Y, Perkin LC, Petek M, Poelchau MF, Record E, Rinehart JP, Robertson HM, Rosendale AJ, Ruiz-Arroyo VM, Smagghe G, Szendrei Z, Thomas GWC, Torson AS, Vargas Jentzsch IM, Weirauch MT, Yates AD, Yocum GD, Yoon JS, Richards S.

Sci Rep 8 1931 PMID:29386578
Lytic xylan oxidases from wood-decay fungi unlock biomass degradation. (2018)

Couturier M, Ladeveze S, Sulzenbacher G, Ciano L, Fanuel M, Moreau C, Villares A, Cathala B, Chaspoul F, Frandsen KE, Labourel A, Herpoel-Gimbert I, Grisel S, Haon M, Lenfant N, Rogniaux H, Ropartz D, Davies GJ, Rosso MN, Walton PH, Henrissat B, Berrin JG.

Nat Chem Biol 14 306-310 PMID:29377002
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans. (2018)

Seeleuthner Y, Mondy S, Lombard V, Carradec Q, Pelletier E, Wessner M, Leconte J, Mangot JF, Poulain J, Labadie K, Logares R, Sunagawa S, de Berardinis V, Salanoubat M, Dimier C, Kandels-Lewis S, Picheral M, Searson S, Pesant S, Poulton N, Stepanauskas R, Bork P, Bowler C, Hingamp P, Sullivan MB, Iudicone D, Massana R, Aury JM, Henrissat B, Karsenti E, Jaillon O, Sieracki M, de Vargas C, Wincker P.

Nat Commun 9 310 PMID:29358710
De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads. (2018)

Eccles D, Chandler J, Camberis M, Henrissat B, Koren S, Le Gros G, Ewbank JJ.

BMC Biol 16 6 PMID:29325570
Identification of Euglena gracilis beta-1,3-glucan phosphorylase and establishment of a new glycoside hydrolase (GH) family GH149. (2018)

Kuhaudomlarp S, Patron NJ, Henrissat B, Rejzek M, Saalbach G, Field RA.

J Biol Chem 293 2865-2876 PMID:29317507
Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists. (2018)

Martino E, Morin E, Grelet GA, Kuo A, Kohler A, Daghino S, Barry KW, Cichocki N, Clum A, Dockter RB, Hainaut M, Kuo RC, LaButti K, Lindahl BD, Lindquist EA, Lipzen A, Khouja HR, Magnuson J, Murat C, Ohm RA, Singer SW, Spatafora JW, Wang M, Veneault-Fourrey C, Henrissat B, Grigoriev IV, Martin FM, Perotto S.

New Phytol 217 1213-1229 PMID:29315638
Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides. (2018)

Luis AS, Briggs J, Zhang X, Farnell B, Ndeh D, Labourel A, Basle A, Cartmell A, Terrapon N, Stott K, Lowe EC, McLean R, Shearer K, Schuckel J, Venditto I, Ralet MC, Henrissat B, Martens EC, Mosimann SC, Abbott DW, Gilbert HJ.

Nat Microbiol 3 210-219 PMID:29255254
Novel carbohydrate binding modules in the surface anchored a-amylase of Eubacterium rectale provide a molecular rationale for the range of starches used by this organism in the human gut. (2018)

Cockburn DW, Suh C, Medina KP, Duvall RM, Wawrzak Z, Henrissat B, Koropatkin NM.

Mol Microbiol 107 249-264 PMID:29139580
PULDB: the expanded database of Polysaccharide Utilization Loci. (2018)

Terrapon N, Lombard V, Drula E, Lapebie P, Al-Masaudi S, Gilbert HJ, Henrissat B.

Nucleic Acids Res 46 D677-D683 PMID:29088389

2017

Comparative Metagenomics of Cellulose- and Poplar Hydrolysate-Degrading Microcosms from Gut Microflora of the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus) after Long-Term Enrichment. (2017)

Wong MT, Wang W, Couturier M, Razeq FM, Lombard V, Lapebie P, Edwards EA, Terrapon N, Henrissat B, Master ER.

Front Microbiol 8 2504 PMID:29326667
A metagenome-derived thermostable beta-glucanase with an unusual module architecture which defines the new glycoside hydrolase family GH148. (2017)

Angelov A, Pham VTT, Ubelacker M, Brady S, Leis B, Pill N, Brolle J, Mechelke M, Moerch M, Henrissat B, Liebl W.

Sci Rep 7 17306 PMID:29229913
Pan-cellulosomics of mesophilic Clostridia: variations on a theme. (2017)

Dassa B, Borovok I, Lombard V, Henrissat B, Lamed R, Bayer EA, Morais S.

Microorganisms 5 pii: E74 PMID:29156585
Ten years of CAZypedia: A living encyclopedia of carbohydrate-active enzymes. (2017)

The CAZypedia Consortium.

Glycobiology 28 3-8 PMID:29040563
Structural and electronic determinants of lytic polysaccharide monooxygenase reactivity on polysaccharide substrates. (2017)

Simmons TJ, Frandsen KEH, Ciano L, Tryfona T, Lenfant N, Poulsen JC, Wilson LFL, Tandrup T, Tovborg M, Schnorr K, Johansen KS, Henrissat B, Walton PH, Lo Leggio L, Dupree P.

Nat Commun 8 1064 PMID:29057953
Feed in summer, rest in winter: microbial carbon utilization in forest topsoil. (2017)

Zifcakova L, Vetrovsky T, Lombard V, Henrissat B, Howe A, Baldrian P.

Microbiome 5 122 PMID:28923122
Unique organization and unprecedented diversity of the Bacteroides (Pseudobacteroides) cellulosolvens cellulosome system. (2017)

Zhivin O, Dassa B, Morais S, Utturkar SM, Brown SD, Henrissat B, Lamed R, Bayer EA.

Biotechnol Biofuels 10 211 PMID:28912832
The yeast Geotrichum candidum encodes functional lytic polysaccharide monooxygenases. (2017)

Ladeveze S, Haon M, Villares A, Cathala B, Grisel S, Herpoel-Gimbert I, Henrissat B, Berrin JG.

Biotechnol Biofuels 10 215 PMID:28919928
Metabolic roles of uncultivated bacterioplankton lineages in the Northern Gulf of Mexico "Dead Zone". (2017)

Thrash JC, Seitz KW, Baker BJ, Temperton B, Gillies LE, Rabalais NN, Henrissat B, Mason OU.

MBio 8 pii: e01017-17 PMID:28900024
Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis. (2017)

Gentekaki E, Curtis BA, Stairs CW, Klimes V, Elias M, Salas-Leiva DE, Herman EK, Eme L, Arias MC, Henrissat B, Hilliou F, Klute MJ, Suga H, Malik SB, Pightling AW, Kolisko M, Rachubinski RA, Schlacht A, Soanes DM, Tsaousis AD, Archibald JM, Ball SG, Dacks JB, Clark CG, van der Giezen M, Roger AJ.

PLoS Biol 15 e2003769 PMID:28892507
How a Glycoside Hydrolase Recognizes a Helical Polyglucan. (2017)

Henrissat B, Garron ML.

Structure 25 1319-1321 PMID:28877502
A Genomic View of Glycobiology (2017)

Henrissat B, Surolia A, Stanley P.

Essentials of Glycobiology (3rd Edition) Chapter 8 pp. 89-98 PMID:28876809
Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters. (2017)

Dallery JF, Lapalu N, Zampounis A, Pigne S, Luyten I, Amselem J, Wittenberg AHJ, Zhou S, de Queiroz MV, Robin GP, Auger A, Hainaut M, Henrissat B, Kim KT, Lee YH, Lespinet O, Schwartz DC, Thon MR, O'Connell RJ.

BMC Genomics 18 667 PMID:28851275
Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12. (2017)

Gaskell J, Kersten P, Larrondo LF, Canessa P, Martinez D, Hibbett D, Schmoll M, Kubicek CP, Martinez AT, Yadav J, Master E, Magnuson JK, Yaver D, Berka R, Lail K, Chen C, LaButti K, Nolan M, Lipzen A, Aerts A, Riley R, Barry K, Henrissat B, Blanchette R, Grigoriev IV, Cullen D.

Genom Data 14 21-23 PMID:28831381
An evolutionarily distinct family of polysaccharide lyases removes rhamnose capping of complex arabinogalactan proteins. (2017)

Munoz-Munoz J, Cartmell A, Terrapon N, Basle A, Henrissat B, Gilbert HJ.

J Biol Chem 292 13271-13283 PMID:28637865
Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation. (2017)

Svartstrom O, Alneberg J, Terrapon N, Lombard V, de Bruijn I, Malmsten J, Dalin AM, El Muller E, Shah P, Wilmes P, Henrissat B, Aspeborg H, Andersson AF.

ISME J 11 2538-2551 PMID:28731473
Comparative analysis of basidiomycete transcriptomes reveals a core set of expressed genes encoding plant biomass degrading enzymes. (2017)

Peng M, Aguilar-Pontes MV, Hainaut M, Henrissat B, Hilden K, Makela MR, de Vries RP.

Fungal Genet Biol 112 40-46 PMID:28803908
How members of the human gut microbiota overcome the sulfation problem posed by glycosaminoglycans. (2017)

Cartmell A, Lowe EC, Basle A, Firbank SJ, Ndeh DA, Murray H, Terrapon N, Lombard V, Henrissat B, Turnbull JE, Czjzek M, Gilbert HJ, Bolam DN.

Proc Natl Acad Sci U S A 114 7037-7042 PMID:28630303
A parts list for fungal cellulosomes revealed by comparative genomics. (2017)

Haitjema CH, Gilmore SP, Henske JK, Solomon KV, de Groot R, Kuo A, Mondo SJ, Salamov AA, LaButti K, Zhao Z, Chiniquy J, Barry K, Brewer HM, Purvine SO, Wright AT, Hainaut M, Boxma B, van Alen T, Hackstein JHP, Henrissat B, Baker SE, Grigoriev IV, O'Malley MA.

Nat Microbiol 2 17087 PMID:28555641
A bioinformatics analysis of 3400 lytic polysaccharide oxidases from family AA9. (2017)

Lenfant N, Hainaut M, Terrapon N, Drula E, Lombard V, Henrissat B.

Carbohydr Res 448 166-174 PMID:28434716
A Metagenomics Investigation of Carbohydrate-Active Enzymes along the Gastrointestinal Tract of Saudi Sheep. (2017)

Al-Masaudi S, El Kaoutari A, Drula E, Al-Mehdar H, Redwan EM, Lombard V, Henrissat B.

Front Microbiol 8 666 PMID:28473812
Unusual active site location and catalytic apparatus in a glycoside hydrolase family. (2017)

Munoz-Munoz J, Cartmell A, Terrapon N, Henrissat B, Gilbert HJ.

Proc Natl Acad Sci U S A 114 4936-4941 PMID:28396425
Archaea: essential inhabitants of the human digestive microbiota (2017)

Demonfort-Nkamga V, Henrissat B, Drancourt M.

Human Microbiome Journal 3 1-8 PMID:0
Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota). (2017)

Teixeira MM, Moreno LF, Stielow BJ, Muszewska A, Hainaut M, Gonzaga L, Abouelleil A, Patane JS, Priest M, Souza R, Young S, Ferreira KS, Zeng Q, da Cunha MM, Gladki A, Barker B, Vicente VA, de Souza EM, Almeida S, Henrissat B, Vasconcelos AT, Deng S, Voglmayr H, Moussa TA, Gorbushina A, Felipe MS, Cuomo CA, de Hoog GS.

Stud Mycol 86 1-28 PMID:28348446
Complex pectin metabolism by gut bacteria reveals novel catalytic functions. (2017)

Ndeh D, Rogowski A, Cartmell A, Luis AS, Basle A, Gray J, Venditto I, Briggs J, Zhang X, Labourel A, Terrapon N, Buffetto F, Nepogodiev S, Xiao Y, Field RA, Zhu Y, O'Neill MA, Urbanowicz BR, York WS, Davies GJ, Abbott DW, Ralet MC, Martens EC, Henrissat B, Gilbert HJ.

Nature 544 65-70 PMID:28329766
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. (2017)

de Vries RP, Riley R, Wiebenga A, Aguilar-Osorio G, Amillis S, Uchima CA, Anderluh G, Asadollahi M, Askin M, Barry K, Battaglia E, Bayram O, Benocci T, Braus-Stromeyer SA, Caldana C, Canovas D, Cerqueira GC, Chen F, Chen W, Choi C, Clum A, Dos Santos RA, Damasio AR, Diallinas G, Emri T, Fekete E, Flipphi M, Freyberg S, Gallo A, Gournas C, Habgood R, Hainaut M, Harispe ML, Henrissat B, Hilden KS, Hope R, Hossain A, Karabika E, Karaffa L, Karanyi Z, Krasevec N, Kuo A, Kusch H, LaButti K, Lagendijk EL, Lapidus A, Levasseur A, Lindquist E, Lipzen A, Logrieco AF, MacCabe A, Makela MR, Malavazi I, Melin P, Meyer V, Mielnichuk N, Miskei M, Molnar AP, Mule G, Ngan CY, Orejas M, Orosz E, Ouedraogo JP, Overkamp KM, Park HS, Perrone G, Piumi F, Punt PJ, Ram AF, Ramon A, Rauscher S, Record E, Riano-Pachon DM, Robert V, Rohrig J, Ruller R, Salamov A, Salih NS, Samson RA, Sandor E, Sanguinetti M, Schutze T, Sepcic K, Shelest E, Sherlock G, Sophianopoulou V, Squina FM, Sun H, Susca A, Todd RB, Tsang A, Unkles SE, van de Wiele N, van Rossen-Uffink D, Oliveira JV, Vesth TC, Visser J, Yu JH, Zhou M, Andersen MR, Archer DB, Baker SE, Benoit I, Brakhage AA, Braus GH, Fischer R, Frisvad JC, Goldman GH, Houbraken J, Oakley B, Pocsi I, Scazzocchio C, Seiboth B, vanKuyk PA, Wortman J, Dyer PS, Grigoriev IV.

Genome Biol 18 28 PMID:28196534
Discovery of genes coding for carbohydrate-active enzyme by metagenomic analysis of lignocellulosic biomasses. (2017)

Montella S, Ventorino V, Lombard V, Henrissat B, Pepe O, Faraco V.

Sci Rep 7 42623 PMID:28198423
Characterization of a mycobacterial cellulase and its impact on biofilm- and drug-induced cellulose production. (2017)

Van Wyk N, Navarro D, Blaise M, Berrin JG, Henrissat B, Drancourt M, Kremer L.

Glycobiology 27 392-399 PMID:28168306
A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic. (2017)

Patrascu O, Beguet-Crespel F, Marinelli L, Le Chatelier E, Abraham AL, Leclerc M, Klopp C, Terrapon N, Henrissat B, Blottiere HM, Dore J, Bera-Maillet C.

Sci Rep 7 40248 PMID:28091525
Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens. (2017)

Uehling J, Gryganskyi A, Hameed K, Tschaplinski T, Misztal PK, Wu S, Desiro A, Vande Pol N, Du Z, Zienkiewicz A, Zienkiewicz K, Morin E, Tisserant E, Splivallo R, Hainaut M, Henrissat B, Ohm R, Kuo A, Yan J, Lipzen A, Nolan M, LaButti K, Barry K, Goldstein AH, Labbe J, Schadt C, Tuskan G, Grigoriev I, Martin F, Vilgalys R, Bonito G.

Environ Microbiol 19 2964-2983 PMID:28076891
Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels. (2017)

Wu W, Davis RW, Tran-Gyamfi MB, Kuo A, LaButti K, Mihaltcheva S, Hundley H, Chovatia M, Lindquist E, Barry K, Grigoriev IV, Henrissat B, Gladden JM.

Appl Microbiol Biotechnol 101 2603-2618 PMID:28078400
The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria. (2017)

Ji B, Zhang SD, Zhang WJ, Rouy Z, Alberto F, Santini CL, Mangenot S, Gagnot S, Philippe N, Pradel N, Zhang L, Tempel S, Li Y, Medigue C, Henrissat B, Coutinho PM, Barbe V, Talla E, Wu LF.

Environ Microbiol 19 1103-1119 PMID:27902881
Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2 (2017)

Ali-Ahmad A, Garron ML, Zamboni V, Lenfant N, Nurizzo D, Henrissat B, Berrin JG, Bourne Y, Vincent F.

J Struct Biol 197 227-235 PMID:27890857
Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome. (2017)

Bensoussan L, Morais S, Dassa B, Friedman N, Henrissat B, Lombard V, Bayer EA, Mizrahi I.

Environ Microbiol 19 185-197 PMID:27712009

2016

Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles. (2016)

Schlegel M, Munsterkotter M, Guldener U, Bruggmann R, Duo A, Hainaut M, Henrissat B, Sieber CM, Hoffmeister D, Grunig CR.

BMC Genomics 17 1015 PMID:27938347
Composting-Like Conditions Are More Efficient for Enrichment and Diversity of Organisms Containing Cellulase-Encoding Genes than Submerged Cultures. (2016)

Heiss-Blanquet S, Fayolle-Guichard F, Lombard V, Hebert A, Coutinho PM, Groppi A, Barre A, Henrissat B.

PLoS One 11 e0167216 PMID:27936240
A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility. (2016)

Desai MS, Seekatz AM, Koropatkin NM, Kamada N, Hickey CA, Wolter M, Pudlo NA, Kitamoto S, Terrapon N, Muller A, Young VB, Henrissat B, Wilmes P, Stappenbeck TS, Nunez G, Martens EC.

Cell 167 1339-1353.e21 PMID:27863247
Current perspectives on the families of glycoside hydrolases of Mycobacterium tuberculosis: their importance and prospects for assigning function to unknowns. (2016)

van Wyk N, Drancourt M, Henrissat B, Kremer L.

Glycobiology 27 112-122 PMID:27697825
CAZyme content of Pochonia chlamydosporia reflects that chitin and chitosan modification are involved in nematode parasitism. (2016)

Aranda-Martinez A, Lenfant N, Escudero N, Zavala-Gonzalez EA, Henrissat B, Lopez-Llorca LV.

Environ Microbiol 18 4200-4215 PMID:27668983
Conformational Flexibility of PL12 family Heparinases: Structure and Substrate Specificity of Heparinase III from Bacteroides thetaiotaomicron (BT4657). (2016)

Ulaganathan T, Shi R, Yao D, Gu RX, Garron ML, Cherney M, Tieleman DP, Sterner E, Li G, Li L, Linhardt RJ, Cygler M.

Glycobiology 27 176-187 PMID:27621378
Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2. (2016)

Miettinen O, Riley R, Barry K, Cullen D, de Vries RP, Hainaut M, Hatakka A, Henrissat B, Hilden K,Kuo R, LaButti K, Lipzen A, Makela MR, Sandor L, Spatafora JW, Grigoriev IV, Hibbett DS.

Genome Announc 4 pii: e00976-16 PMID:27634999
Visual Comparative Omics of Fungi for Plant Biomass Deconstruction. (2016)

Miyauchi S, Navarro D, Grigoriev IV, Lipzen A, Riley R, Chevret D, Grisel S, Berrin JG, Henrissat B, Rosso MN.

Front Microbiol 7 1335 PMID:27605927
Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum. (2016)

Peter M, Kohler A, Ohm RA, Kuo A, Krutzmann J, Morin E, Arend M, Barry KW, Binder M, Choi C, Clum A, Copeland A, Grisel N, Haridas S, Kipfer T, LaButti K, Lindquist E, Lipzen A, Maire R, Meier B, Mihaltcheva S, Molinier V, Murat C, Poggeler S, Quandt CA, Sperisen C, Tritt A, Tisserant E, Crous PW, Henrissat B, Nehls U, Egli S, Spatafora JW, Grigoriev IV, Martin FM.

Nat Commun 7 12662 PMID:27601008
The mechanism by which arabinoxylanases can recognise highly decorated xylans. (2016)

Labourel A, Crouch LI, Bras JL, Jackson A, Rogowski A, Gray J, Yadav MP, Henrissat B, Fontes CM, Gilbert HJ, Najmudin S, Basle A, Cuskin F.

J Biol Chem 291 22149-22159 PMID:27531750
CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems. (2016)

Abot A, Arnal G, Auer L, Lazuka A, Labourdette D, Lamarre S, Trouilh L, Laville E, Lombard V, Potocki-Veronese G, Henrissat B, O'Donohue M, Hernandez-Raquet G, Dumon C, Leberre VA.

BMC Genomics 17 671 PMID:27552843
Functional Exploration of the Polysaccharide Lyase Family PL6. (2016)

Mathieu S, Henrissat B, Labre F, Skjak-Braek G, Helbert W.

PLoS One 11 e0159415 PMID:27438604
Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi. (2016)

Zeiner CA, Purvine SO, Zink EM, Pasa-Tolic L, Chaput DL, Haridas S, Wu S, LaButti K, Grigoriev IV, Henrissat B, Santelli CM, Hansel CM.

PLoS One 11 e0157844 PMID:27434633
Draft Genome Sequence of the Deep-Sea Ascomycetous Filamentous Fungus Cadophora malorum Mo12 from the Mid-Atlantic Ridge Reveals Its Biotechnological Potential. (2016)

Redou V, Kumar A, Hainaut M, Henrissat B, Record E, Barbier G, Burgaud G.

Genome Announc 4 PMID:27389260
Draft Genome Sequence of the Deep-Sea Basidiomycetous Yeast Cryptococcus sp. Strain Mo29 Reveals Its Biotechnological Potential. (2016)

Redou V, Kumar A, Hainaut M, Henrissat B, Record E, Barbier G, Burgaud G.

Genome Announc 4 PMID:27389259
Metagenomics unveils the attributes of the alginolytic guilds of sediments from four distant cold coastal environments. (2016)

Matos MN, Lozada M, Anselmino LE, Musumeci MA, Henrissat B, Jansson JK, Mac Cormack WP, Carroll J, Sjoling S, Lundgren L, Dionisi HM.

Environ Microbiol 18 4471-4484 PMID:27348213
Single-domain flavoenzymes trigger lytic polysaccharide monooxygenases for oxidative degradation of cellulose. (2016)

Garajova S, Mathieu Y, Beccia MR, Bennati-Granier C, Biaso F, Fanuel M, Ropartz D, Guigliarelli B, Record E, Rogniaux H, Henrissat B, Berrin JG.

Sci Rep 6 28276 PMID:27312718
Complexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition. (2016)

Venditto I, Luis AS, Rydahl M, Schuckel J, Fernandes VO, Vidal-Melgosa S, Bule P, Goyal A, Pires VM, Dourado CG, Ferreira LM, Coutinho PM, Henrissat B, Knox JP, Basle A, Najmudin S, Gilbert HJ, Willats WG, Fontes CM.

Proc Natl Acad Sci U S A 113 7136-7141 PMID:27298375
The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence. (2016)

Eves-van den Akker S, Laetsch DR, Thorpe P, Lilley CJ, Danchin EG, Da Rocha M, Rancurel C, Holroyd NE, Cotton JA, Szitenberg A, Grenier E, Montarry J, Mimee B, Duceppe MO, Boyes I, Marvin JM, Jones LM, Yusup HB, Lafond-Lapalme J, Esquibet M, Sabeh M, Rott M, Overmars H, Finkers-Tomczak A, Smant G, Koutsovoulos G, Blok V, Mantelin S, Cock PJ, Phillips W, Henrissat B, Urwin PE, Blaxter M, Jones JT.

Genome Biol 17 124 PMID:27286965
Genome assembly of the fungus Cochliobolus miyabeanus, and transcriptome analysis during early stages of infection on American wildrice (Zizania palustris L.). (2016)

Castell-Miller CV, Gutierrez-Gonzalez JJ, Tu ZJ, Bushley KE, Hainaut M, Henrissat B, Samac DA.

PLoS One 11 e0154122 PMID:27253872
Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication. (2016)

Corrochano LM, Kuo A, Marcet-Houben M, Polaino S, Salamov A, Villalobos-Escobedo JM, Grimwood J, Alvarez MI, Avalos J, Bauer D, Benito EP, Benoit I, Burger G, Camino LP, Canovas D, Cerda-Olmedo E, Cheng JF, Dominguez A, Elias M, Eslava AP, Glaser F, Gutierrez G, Heitman J, Henrissat B, Iturriaga EA, Lang BF, Lavin JL, Lee SC, Li W, Lindquist E, Lopez-Garcia S, Luque EM, Marcos AT, Martin J, McCluskey K, Medina HR, Miralles-Duran A, Miyazaki A, Munoz-Torres E, Oguiza JA, Ohm RA, Olmedo M, Orejas M, Ortiz-Castellanos L, Pisabarro AG, Rodriguez-Romero J, Ruiz-Herrera J, Ruiz-Vazquez R, Sanz C, Schackwitz W, Shahriari M, Shelest E, Silva-Franco F, Soanes D, Syed K, Tagua VG, Talbot NJ, Thon MR, Tice H, de Vries RP, Wiebenga A, Yadav JS, Braun EL, Baker SE, Garre V, Schmutz J, Horwitz BA, Torres-Martinez S, Idnurm A, Herrera-Estrella A, Gabaldon T, Grigoriev IV.

Curr Biol 26 1577-1584 PMID:27238284
The mucin-degradation strategy of Ruminococcus gnavus: the importance of intramolecular trans-sialidases. (2016)

Crost EH, Tailford LE, Monestier M, Swarbreck D, Henrissat B, Crossman LC, Juge N.

Gut Microbes 7 302-312 PMID:27223845
Increased Gut Redox and Depletion of Anaerobic and Methanogenic Prokaryotes in Severe Acute Malnutrition. (2016)

Million M, Tidjani Alou M, Khelaifia S, Bachar D, Lagier JC, Dione N, Brah S, Hugon P, Lombard V, Armougom F, Fromonot J, Robert C, Michelle C, Diallo A, Fabre A, Guieu R, Sokhna C, Henrissat B, Parola P, Raoult D.

Sci Rep 6 26051 PMID:27183876
Glycans affect DNA extraction and induce substantial differences in gut metagenomic studies. (2016)

Angelakis E, Bachar D, Henrissat B, Armougom F, Audoly G, Lagier JC, Robert C, Raoult D.

Sci Rep 6 26276 PMID:27188959
Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes. (2016)

Lebrigand K, He LD, Thakur N, Arguel MJ, Polanowska J, Henrissat B, Record E, Magdelenat G, Barbe V, Raffaele S, Barbry P, Ewbank JJ.

PLoS Genet 12 e1006017 PMID:27153332
Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi. (2016)

Hacquard S, Kracher B, Hiruma K, Munch PC, Garrido-Oter R, Thon MR, Weimann A, Damm U, Dallery JF, Hainaut M, Henrissat B, Lespinet O, Sacristan S, Ver Loren van Themaat E, Kemen E, McHardy AC, Schulze-Lefert P, O'Connell RJ.

Nat Commun 7 11362 PMID:27150427
Xylan degradation by the human gut Bacteroides xylanisolvens XB1A(T) involves two distinct gene clusters that are linked at the transcriptional level. (2016)

Despres J, Forano E, Lepercq P, Comtet-Marre S, Jubelin G, Chambon C, Yeoman CJ, Berg Miller ME, Fields CJ, Martens E, Terrapon N, Henrissat B, White BA, Mosoni P.

BMC Genomics 17 326 PMID:27142817
Understanding plant cell-wall remodelling during the symbiotic interaction between Tuber melanosporum and Corylus avellana using a carbohydrate microarray. (2016)

Sillo F, Fangel JU, Henrissat B, Faccio A, Bonfante P, Martin F, Willats WG, Balestrini R.

Planta 244 347-359 PMID:27072675
Relationships of human alpha/beta hydrolase fold proteins and other organophosphate-interacting proteins. (2016)

Lenfant N, Bourne Y, Marchot P, Chatonnet A.

Chem Biol Interact 259 343-351 PMID:27109753
Gut bacteria that prevent growth impairments transmitted by microbiota from malnourished children. (2016)

Blanton LV, Charbonneau MR, Salih T, Barratt MJ, Venkatesh S, Ilkaveya O, Subramanian S, Manary MJ, Trehan I, Jorgensen JM, Fan YM, Henrissat B, Leyn SA, Rodionov DA, Osterman AL, Maleta KM, Newgard CB, Ashorn P, Dewey KG, Gordon JI.

Science 351 pii: aad3311 PMID:26912898
The molecular basis of polysaccharide cleavage by lytic polysaccharide monooxygenases. (2016)

Frandsen KE, Simmons TJ, Dupree P, Poulsen JN, Hemsworth GR, Ciano L, Johnston EM, Tovborg M, Johansen KS, von Freiesleben P, Marmuse L, Fort S, Cottaz S, Driguez H, Henrissat B, Lenfant N, Tuna F, Baldansuren A, Davies GJ, Lo Leggio L, Walton PH.

Nat Chem Biol 12 298-303 PMID:26928935
Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis. (2016)

Despres J, Forano E, Lepercq P, Comtet-Marre S, Jubelin G, Yeoman CJ, Miller ME, Fields CJ, Terrapon N, Le Bourvellec C, Renard CM, Henrissat B, White BA, Mosoni P.

BMC Genomics 17 147 PMID:26920945
The quaternary structure of a glycoside hydrolase dictates specificity towards beta-glucans. (2016)

Lafond M, Sulzenbacher G, Freyd T, Henrissat B, Berrin JG, Garron ML.

J Biol Chem 291 7183-94 PMID:26755730
Dividing the large glycoside hydrolase family 43 into subfamilies: a motivation for detailed enzyme characterization. (2016)

Mewis K, Lenfant N, Lombard V, Henrissat B.

Appl Environ Microbiol 82 1686-1692 PMID:26729713
The genome of Xylona heveae provides a window into fungal endophytism. (2016)

Gazis R, Kuo A, Riley R, LaButti K, Lipzen A, Lin J, Amirebrahimi M, Hesse CN, Spatafora JW, Henrissat B, Hainaut M, Grigoriev IV, Hibbett DS.

Fungal Biol 120 26-42 PMID:26693682
Structure-function analysis of a mixed-linkage beta-glucanase/xyloglucanase from key ruminal Bacteroidetes Prevotella bryantii B14. (2016)

McGregor N, Morar M, Fenger TH, Stogios P, Lenfant N, Yin V, Xu X, Evdokimova E, Cui H, Henrissat B, Savchenko A, Brumer H.

J Biol Chem 291 1175-1197 PMID:26507654
Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors. (2016)

Shah F, Nicolas C, Bentzer J, Ellstrom M, Smits M, Rineau F, Canback B, Floudas D, Carleer R, Lackner G, Braesel J, Hoffmeister D, Henrissat B, Ahren D, Johansson T, Hibbett DS, Martin F, Persson P, Tunlid A.

New Phytol 209 1705-1719 PMID:26527297

2015

Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus. (2015)

Couturier M, Navarro D, Chevret D, Henrissat B, Piumi F, Ruiz-Duenas FJ, Martinez AT, Grigoriev IV, Riley R, Lipzen A, Berrin JG, Master ER, Rosso MN.

Biotechnol Biofuels 8 216 PMID:26692083
Structure-function characterization reveals new catalytic diversity in the galactose oxidase and glyoxal oxidase family. (2015)

Yin DT, Urresti S, Lafond M, Johnston EM, Derikvand F, Ciano L, Berrin JG, Henrissat B, Walton PH, Davies GJ, Brumer H.

Nat Commun 6 10197 PMID:26680532
De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulis Strain LF580 Unravels Life-Style Traits and Anticancerous Scopularide Biosynthetic Gene Cluster. (2015)

Kumar A, Henrissat B, Arvas M, Syed MF, Thieme N, Benz JP, Sorensen JL, Record E, Poggeler S, Kempken F.

PLoS One 10 e0140398 PMID:26505484
Deciphering genome content and evolutionary relationships of isolates from the fungus Magnaporthe oryzae attacking different host plants. (2015)

Chiapello H, Mallet L, Guerin C, Aguileta G, Amselem J, Kroj T, Ortega-Abboud E, Lebrun MH, Henrissat B, Gendrault A, Rodolphe F, Tharreau D, Fournier E.

Genome Biol Evol 7 2896-2912 PMID:26454013
Unique organization of extracellular amylases into amylosomes in the resistant starch-utilizing human colonic Firmicutes bacterium Ruminococcus bromii. (2015)

Ze X, Ben David Y, Laverde-Gomez JA, Dassa B, Sheridan PO, Duncan SH, Louis P, Henrissat B, Juge N, Koropatkin NM, Bayer EA, Flint HJ.

MBio 6 e01058-15 PMID:26419877
A metagenomic investigation of the duodenal microbiota reveals links with obesity. (2015)

Angelakis E, Armougom F, Carriere F, Bachar D, Laugier R, Lagier JC, Robert C, Michelle C, Henrissat B, Raoult D.

PLoS One 10 e0137784 PMID:26356733
The transcriptome of Euglena gracilis reveals unexpected metabolic capabilities for carbohydrate and natural product biochemistry. (2015)

O'Neill EC, Trick M, Hill L, Rejzek M, Dusi RG, Hamilton CJ, Zimba PV, Henrissat B, Field RA.

Mol Biosyst 11 2808-20 PMID:26289754
Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides. (2015)

Wu M, McNulty NP, Rodionov DA, Khoroshkin MS, Griffin NW, Cheng J, Latreille P, Kerstetter RA, Terrapon N, Henrissat B, Osterman AL, Gordon JI.

Science 350 aac5992 PMID:26430127
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. (2015)

Babbitt PC, Bagos PG, Bairoch A, Bateman A, Chatonnet A, Chen MJ, Craik DJ, Finn RD, Gloriam D, Haft DH, Henrissat B, Holliday GL, Isberg V, Kaas Q, Landsman D, Lenfant N, Manning G, Nagano N, Srinivasan N, O'Donovan C, Pruitt KD, Sowdhamini R, Rawlings ND, Saier MH Jr, Sharman JL, Spedding M, Tsirigos KD, Vastermark A, Vriend G.

Database (Oxford) 2015 bav063 PMID:26284514
Closely related fungi employ diverse enzymatic strategies to degrade plant biomass. (2015)

Benoit I, Culleton H, Zhou M, DiFalco M, Aguilar-Osorio G, Battaglia E, Bouzid O, Brouwer CP, El-Bushari HB, Coutinho PM, Gruben BS, Hilden KS, Houbraken J, Barboza LA, Levasseur A, Majoor E, Makela MR, Narang HM, Trejo-Aguilar B, van den Brink J, vanKuyk PA, Wiebenga A, McKie V, McCleary B, Tsang A, Henrissat B, de Vries RP.

Biotechnol Biofuels 8 107 PMID:26236396
Gut microbiota richness promotes its stability upon increased dietary fiber intake in healthy adults. (2015)

Tap J, Furet JP, Bensaada M, Philippe C, Roth H, Rabot S, Lakhdari O, Lombard V, Henrissat B, Corthier G, Fontaine E, Dore J, Leclerc M.

Environ Microbiol 17 4954-4964 PMID:26235304
Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis. (2015)

Dore J, Perraud M, Dieryckx C, Kohler A, Morin E, Henrissat B, Lindquist E, Zimmermann SD, Girard V, Kuo A, Grigoriev IV, Martin F, Marmeisse R, Gay G.

New Phytol 208 1169-1187 PMID:26171947
Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts. (2015)

Morel G, Sterck L, Swennen D, Marcet-Houben M, Onesime D, Levasseur A, Jacques N, Mallet S, Couloux A, Labadie K, Amselem J, Beckerich JM, Henrissat B, Van de Peer Y, Wincker P, Souciet JL, Gabaldon T, Tinsley CR, Casaregola S.

Sci Rep 5 11571 PMID:26108467
Glycan complexity dictates microbial resource allocation in the large intestine. (2015)

Rogowski A, Briggs JA, Mortimer JC, Tryfona T, Terrapon N, Lowe EC, Basle A, Morland C, Day AM, Zheng H, Rogers TE, Thompson P, Hawkins AR, Yadav MP, Henrissat B, Martens EC, Dupree P, Gilbert HJ, Bolam DN.

Nat Commun 6 7481 PMID:26112186
Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels. (2015)

Petit E, Coppi MV, Hayes JC, Tolonen AC, Warnick T, Latouf WG, Amisano D, Biddle A, Mukherjee S, Ivanova N, Lykidis A, Land M, Hauser L, Kyrpides N, Henrissat B, Lau J, Schnell DJ, Church GM, Leschine SB, Blanchard JL.

PLoS One 10 e0118285 PMID:26035711
Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus. (2015)

Perlin MH, Amselem J, Fontanillas E, Toh SS, Chen Z, Goldberg J, Duplessis S, Henrissat B, Young S, Zeng Q, Aguileta G, Petit E, Badouin H, Andrews J, Razeeq D, Gabaldon T, Quesneville H, Giraud T, Hood ME, Schultz DJ, Cuomo CA.

BMC Genomics 16 461 PMID:26076695
Key challenges for the creation and maintenance of specialist protein resources. (2015)

Holliday GL, Bairoch A, Bagos PG, Chatonnet A, Craik DJ, Flinn RD, Henrissat B, Landsman D, Manning G, Nagano N, O'Donovan C, Pruitt KD, Rawlings ND, Saier M, Sowdhamini R, Spedding M, Srinivasan N, Vriend G, Babbitt PC, Bateman A.

Proteins 83 1005-1013 PMID:25820941
Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen. (2015)

Dhillon B, Feau N, Aerts AL, Beauseigle S, Bernier L, Copeland A, Foster A, Gill N, Henrissat B, Herath P, LaButti KM, Levasseur A, Lindquist EA, Majoor E, Ohm RA, Pangilinan JL, Pribowo A, Saddler JN, Sakalidis ML, de Vries RP, Grigoriev IV, Goodwin SB, Tanguay P, Hamelin RC.

Proc Natl Acad Sci U S A 112 3451-3456 PMID:25733908
Structural basis for carbohydrate binding properties of a plant chitinase-like agglutinin with conserved catalytic machinery. (2015)

Sulzenbacher G, Roig-Zamboni V, Peumans WJ, Henrissat B, van Damme EJM, Bourne Y.

J Struct Biol 190 115-121 PMID:25727185
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists. (2015)

Kohler A, Kuo A, Nagy LG, Morin E, Barry KW, Buscot F, Canback B, Choi C, Cichocki N, Clum A, Colpaert J, Copeland A, Costa MD, Dore J, Floudas D, Gay G, Girlanda M, Henrissat B, Herrmann S, Hess J, Hogberg N, Johansson T, Khouja HR, LaButti K, Lahrmann U, Levasseur A, Lindquist EA, Lipzen A, Marmeisse R, Martino E, Murat C, Ngan CY, Nehls U, Plett JM, Pringle A, Ohm RA, Perotto S, Peter M, Riley R, Rineau F, Ruytinx J, Salamov A, Shah F, Sun H, Tarkka M, Tritt A, Veneault-Fourrey C, Zuccaro A, Mycorrhizal Genomics Initiative Consortium, Tunlid A, Grigoriev IV, Hibbett DS, Martin F.

Nat Genet 47 410-415 PMID:25706625
Structure and boosting activity of a starch-degrading lytic polysaccharide monooxygenase. (2015)

Lo Leggio L, Simmons TJ, Poulsen JC, Frandsen KE, Hemsworth GR, Stringer MA, von Freiesleben P, Tovborg M, Johansen KS, De Maria L, Harris PV, Soong CL, Dupree P, Tryfona T, Lenfant N, Henrissat B, Davies GJ, Walton PH.

Nat Commun 6 5961 PMID:25608804
Insights on the Evolution of Mycoparasitism from the Genome of Clonostachys rosea. (2015)

Karlsson M, Durling MB, Choi J, Kosawang C, Lackner G, Tzelepis GD, Nygren K, Dubey MK, Kamou N, Levasseur A, Zapparata A, Wang J, Amby DB, Jensen B, Sarrocco S, Panteris E, Lagopodi AL, Poggeler S, Vannacci G, Collinge DB, Hoffmeister D, Henrissat B, Lee YH, Jensen DF.

Genome Biol Evol 7 465-480 PMID:25575496
Automatic Prediction of Polysaccharide Utilization Loci in Bacteroidetes Species. (2015)

Terrapon N, Lombard V, Gilbert HJ, Henrissat B.

Bioinformatics 31 647-655 PMID:25355788
A Glycogene Mutation Map (GlyMAP) for Discovery of Diseases of Glycosylation. (2015)

Hansen L, Lind-Thomsen A, Joshi HJ, Pedersen NB, Have CT, Kong Y, Wang S, Sparso T, Grarup N, Vester-Christensen MB, Schjoldager K, Freeze HH, Hansen T, Pedersen O, Henrissat B, Mandel U, Clausen H, Wandall HH, Bennett EP.

Glycobiology 25 211-224 PMID:25267602

2014

Uronic polysaccharide degrading enzymes. (2014)

Garron ML, Cygler M.

Curr Opin Struct Biol 28 87-95 PMID:25156747
Functional Annotation of the Ophiostoma novo-ulmi Genome: Insights into the Phytopathogenicity of the Fungal Agent of Dutch Elm Disease. (2014)

Comeau AM, Dufour J, Bouvet GF, Jacobi V, Nigg M, Henrissat B, Laroche J, Levesque RC, Bernier L.

Genome Biol Evol 7 410-430 PMID:25539722
Draft Genome Sequence of Pseudoalteromonas sp. Strain PLSV, an Ulvan-Degrading Bacterium. (2014)

Kopel M, Helbert W, Henrissat B, Doniger T, Banin E.

Genome Announc 2 e01257-14 PMID:25502665
Analysis of the Phlebiopsis gigantea genome, transcriptome and secretome provides insight into its pioneer colonization strategies of wood. (2014)

Hori C, Ishida T, Igarashi K, Samejima M, Suzuki H, Master E, Ferreira P, Ruiz-Duenas FJ, Held B, Canessa P, Larrondo LF, Schmoll M, Druzhinina IS, Kubicek CP, Gaskell JA, Kersten P, St John F, Glasner J, Sabat G, Splinter BonDurant S, Syed K, Yadav J, Mgbeahuruike AC, Kovalchuk A, Asiegbu FO, Lackner G, Hoffmeister D, Rencoret J, Gutierrez A, Sun H, Lindquist E, Barry K, Riley R, Grigoriev IV, Henrissat B, Kues U, Berka RM, Martinez AT, Covert SF, Blanchette RA, Cullen D.

PLoS Genet 10 e1004759 PMID:25474575
Gill bacteria enable a novel digestive strategy in a wood-feeding mollusk. (2014)

O'Connor RM, Fung JM, Sharp KH, Benner JS, McClung C, Cushing S, Lamkin ER, Fomenkov AI, Henrissat B, Londer YY, Scholz MB, Posfai J, Malfatti S, Tringe SG, Woyke T, Malmstrom RR, Coleman-Derr D, Altamia MA, Dedrick S, Kaluziak ST, Haygood MG, Distel DL.

Proc Natl Acad Sci U S A 111 E5096-104 PMID:25385629
Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis . (2014)

Teixeira MM, de Almeida LG, Kubitschek-Barreira P, Alves FL, Kioshima ES, Abadio AK, Fernandes L, Derengowski LS, Ferreira KS, Souza RC, Ruiz JC, de Andrade NC, Paes HC, Nicola AM, Albuquerque P, Gerber AL, Martins VP, Peconick LD, Neto AV, Chaucanez CB, Silva PA, Cunha OL, de Oliveira FF, Dos Santos TC, Barros AL, Soares MA, de Oliveira LM, Marini MM, Villalobos-Duno H, Cunha MM, de Hoog S, da Silveira JF, Henrissat B, Nino-Vega GA, Cisalpino PS, Mora-Montes HM, Almeida SR, Stajich JE, Lopes-Bezerra LM, Vasconcelos AT, Felipe MS.

BMC Genomics 15 943 PMID:25351875
Draft Genome Sequence of Nonlabens ulvanivorans , an Ulvan-Degrading Bacterium. (2014)

Kopel M, Helbert W, Henrissat B, Doniger T, Banin E.

Genome Announc 2 e00793-14 PMID:25125644
Draft Genome Sequences of Two Ulvan-Degrading Isolates, Strains LTR and LOR, That Belong to the Alteromonas Genus. (2014)

Kopel M, Helbert W, Henrissat B, Doniger T, Banin E.

Genome Announc 2 e01081-14 PMID:25342689
Fast solubilization of recalcitrant cellulosic biomass by the basidiomycete fungus Laetisaria arvalis involves successive secretion of oxidative and hydrolytic enzymes. (2014)

Navarro D, Rosso MN, Haon M, Olive C, Bonnin E, Lesage-Meessen L, Chevret D, Coutinho PM, Henrissat B, Berrin JG.

Biotechnol Biofuels 7 143 PMID:25320637
Dissection of hexosyl-and sialyl-transferase domains in the bi-functional capsule polymerases from Neisseria meningitidis W and Y defines a new sialyltransferase family. (2014)

Romanow A, Keys TG, Stummeyer K, Freiberger F, Henrissat B, Gerardy-Schahn R.

J Biol Chem 289 33945-33957 PMID:25342753
Bacteria from diverse habitats colonize and compete in the mouse gut. (2014)

Seedorf H, Griffin NW, Ridaura VK, Reyes A, Cheng J, Rey FE, Smith MI, Simon GM, Scheffrahn RH, Woebken D, Spormann AM, Van Treuren W, Ursell LK, Pirrung M, Robbins-Pianka A, Cantarel BL, Lombard V, Henrissat B, Knight R, Gordon JI.

Cell 159 253-266 PMID:25284151
Carbohydrate-related enzymes of important Phytophthora plant pathogens. (2014)

Brouwer H, Coutinho PM, Henrissat B, de Vries RP.

Fungal Genet Biol 72 192-200 PMID:25192612
Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment. (2014)

Veneault-Fourrey C, Commun C, Kohler A, Morin E, Balestrini R, Plett J, Danchin E, Coutinho P, Wiebenga A, de Vries RP, Henrissat B, Martin F.

Fungal Genet Biol 72 168-181 PMID:25173823
Comparative analysis of carbohydrate active enzymes in Clostridium termitidis CT1112 reveals complex carbohydrate degradation ability. (2014)

Munir RI, Schellenberg J, Henrissat B, Verbeke TJ, Sparling R, Levin DB.

PLoS One 9 e104260 PMID:25101643
Le microbiote intestinal et la digestion des polysaccharides (2014)

El Kaoutari A, Armougom F, Raoult D, Henrissat B.

Med Sci (Paris) 30 259-265 PMID:24685216
Draft Genome Sequence of a Rare Smut Relative, Tilletiaria anomala UBC 951. (2014)

Toome M, Kuo A, Henrissat B, Lipzen A, Tritt A, Yoshinaga Y, Zane M, Barry K, Grigoriev IV, Spatafora JW, Aime MC.

Genome Announc 2 e00539-14 PMID:24926052
Rumen cellulosomics: divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains. (2014)

Dassa B, Borovok I, Ruimy-Israeli V, Lamed R, Flint HJ, Duncan SH, Henrissat B, Coutinho P, Morrison M, Mosoni P, Yeoman CJ, White BA, Bayer EA.

PLoS One 9 e99221 PMID:24992679
Enhanced whole genome sequence and annotation of Clostridium stercorarium DSM8532T using RNA-seq transcriptomics and high-throughput proteomics. (2014)

Schellenberg JJ, Verbeke TJ, McQueen P, Krokhin OV, Zhang X, Alvare G, Fristensky B, Thallinger GG, Henrissat B, Wilkins JA, Levin DB, Sparling R.

BMC Genomics 15 567 PMID:24998381
Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi. (2014)

Riley R, Salamov AA, Brown DW, Nagy LG, Floudas D, Held BW, Levasseur A, Lombard V, Morin E, Otillar R, Lindquist EA, Sun H, LaButti KM, Schmutz J, Jabbour D, Luo H, Baker SE, Pisabarro AG, Walton JD, Blanchette RA, Henrissat B, Martin F, Cullen D, Hibbett DS, Grigoriev IV.

Proc Natl Acad Sci U S A 111 9923-9928 PMID:24958869
The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown. (2014)

Levasseur A, Lomascolo A, Chabrol O, Ruiz-Duenas FJ, Boukhris-Uzan E, Piumi F, Kues U, Ram AF, Murat C, Haon M, Benoit I, Arfi Y, Chevret D, Drula E, Kwon MJ, Gouret P, Lesage-Meessen L, Lombard V, Mariette J, Noirot C, Park J, Patyshakuliyeva A, Sigoillot JC, Wiebenga A, Wosten HA, Martin F, Coutinho PM, de Vries RP, Martinez AT, Klopp C, Pontarotti P, Henrissat B, Record E.

BMC Genomics 15 486 PMID:24942338
Are stool samples suitable for studying the link between gut microbiota and obesity? (2014)

Raoult D, Henrissat B.

Eur J Epidemiol 29 307-9 PMID:24838696
How do gut microbes break down dietary fiber? (2014)

Terrapon N, Henrissat B.

Trends Biochem Sci 39 156-8 PMID:24613530
Comparative analyses of Podospora anserina secretomes reveal a large array of lignocellulose-active enzymes. (2014)

Poidevin L, Berrin JG, Bennati-Granier C, Levasseur A, Herpoel-Gimbert I, Chevret D, Coutinho PM, Henrissat B, Heiss-Blanquet S, Record E.

Appl Microbiol Biotechnol 98 7457-7469 PMID:24695830
Genome sequence and transcriptome analyses of the thermophilic zygomycete fungus Rhizomucor miehei. (2014)

Zhou P, Zhang G, Chen S, Jiang Z, Tang Y, Henrissat B, Yan Q, Yang S, Chen CF, Zhang B, Du Z.

BMC Genomics 15 294 PMID:24746234
Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations. (2014)

Looft T, Allen HK, Cantarel BL, Levine UY, Bayles DO, Alt DP, Henrissat B, Stanton TB.

ISME J 8 1566-1576 PMID:24522263
Comparative genomics analysis of Lactobacillus species associated with weight gain or weight protection. (2014)

Drissi F, Merhej V, Angelakis E, El Kaoutari A, Carriere F, Henrissat B, Raoult D.

Nutr Diabetes 4 e109 PMID:24567124
A novel unsaturated beta-glucuronyl hydrolase involved in ulvan degradation unveils the versatility of stereochemistry requirements in family GH105. (2014)

Nyvall-Collen P, Jeudy A, Sassi JF, Groisillier A, Czjzek M, Coutinho PM, Helbert W.

J Biol Chem 289 6199-211 PMID:24407291
First structural insights into alpha-L-arabinofuranosidases from the two GH62 glycoside hydrolase subfamilies. (2014)

Siguier B, Haon M, Nahoum V, Marcellin M, Burlet-Schiltz O, Coutinho PM, Henrissat B, Mourey L, O Donohue MJ, Berrin JG, Tranier S, Dumon C.

J Biol Chem 289 5261-73 PMID:24394409
Discovery and characterization of a new family of lytic polysaccharide monooxygenases. (2014)

Hemsworth GR, Henrissat B, Davies GJ, Walton PH.

Nat Chem Biol 10 122-6 PMID:24362702
Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae. (2014)

Toome M, Ohm RA, Riley RW, James TY, Lazarus KL, Henrissat B, Albu S, Boyd A, Chow J, Clum A, Heller G, Lipzen A, Nolan M, Sandor L, Zvenigorodsky N, Grigoriev IV, Spatafora JW, Aime MC.

New Phytol 202 554-64 PMID:24372469
Gene-targeted metagenomic analysis of glucan-branching enzyme gene profiles among human and animal fecal microbiota. (2014)

Lee S, Cantarel B, Henrissat B, Gevers D, Birren BW, Huttenhower C, Ko G.

ISME J 8 493-503 PMID:24108330
The carbohydrate-active enzymes database (CAZy) in 2013. (2014)

Lombard V, Golaconda Ramulu H, Drula E, Coutinho PM, Henrissat B.

Nucleic Acids Res 42 D490-5 PMID:24270786
Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucans. (2014)

Wegmann U, Louis P, Goesmann A, Henrissat B, Duncan SH, Flint HJ.

Environ Microbiol 16 2879-2890 PMID:23919528
Comparative genomic analysis provides insights into the evolution and niche adaptation of marine Magnetospira sp. QH-2 strain. (2014)

Ji B, Zhang SD, Arnoux P, Rouy Z, Alberto F, Philippe N, Murat D, Zhang WJ, Rioux JB, Ginet N, Sabaty M, Mangenot S, Pradel N, Tian J, Yang J, Zhang L, Zhang W, Pan H, Henrissat B, Coutinho PM, Li Y, Xiao T, Medigue C, Barbe V, Pignol D, Talla E, Wu LF.

Environ Microbiol 16 525-44 PMID:23841906

2013

Development and Validation of a Microarray for the Investigation of the CAZymes Encoded by the Human Gut Microbiome. (2013)

El Kaoutari A, Armougom F, Leroy Q, Vialettes B, Million M, Raoult D, Henrissat B.

PLoS One 8 e84033 PMID:24391873
Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis. (2013)

Tisserant E, Malbreil M, Kuo A, Kohler A, Symeonidi A, Balestrini R, Charron P, Duensing N, Frei Dit Frey N, Gianinazzi-Pearson V, Gilbert LB, Handa Y, Herr JR, Hijri M, Koul R, Kawaguchi M, Krajinski F, Lammers PJ, Masclaux FG, Murat C, Morin E, Ndikumana S, Pagni M, Petitpierre D, Requena N, Rosikiewicz P, Riley R, Saito K, San Clemente H, Shapiro H, van Tuinen D, Becard G, Bonfante P, Paszkowski U, Shachar-Hill YY, Tuskan GA, Young PW, Sanders IR, Henrissat B, Rensing SA, Grigoriev IV, Corradi N, Roux C, Martin F.

Proc Natl Acad Sci U S A 110 20117-22 PMID:24277808
The abundance and variety of carbohydrate-active enzymes in the human gut microbiota. (2013)

El Kaoutari A, Armougom F, Gordon JI, Raoult D, Henrissat B.

Nat Rev Microbiol 11 497-504 PMID:23748339
Role of glycoside-phosphorylases in mannose foraging by human gut bacteria. (2013)

Ladeveze S, Tarquis L, Cecchini DA, Bercovici J, Andre I, Topham CM, Morel S, Laville E, Monsan PF, Lombard V, Henrissat B, Potocki-Veronese G.

J Biol Chem 288 32370-32383 PMID:24043624
Utilisation of Mucin Glycans by the Human Gut Symbiont Ruminococcus gnavus Is Strain-Dependent. (2013)

Crost EH, Tailford LE, Le Gall G, Fons M, Henrissat B, Juge N.

PLoS One 8 e76341 PMID:24204617
Cracking the code, slowly: the state of carbohydrate-active enzymes in 2013. (2013)

Davies GJ, Henrissat B.

Curr Opin Struct Biol 23 649-651 PMID:24076043
Identification of the galactosyltransferase of Cryptococcus neoformans involved in the biosynthesis of basidiomycete-type glycosylinositolphosphoceramide. (2013)

Wohlschlager T, Buser R, Skowyra ML, Haynes BC, Henrissat B, Doering TL, Kunzler M, Aebi M.

Glycobiology 23 1210-9 PMID:23926231
Multiple rewards from a treasure trove of novel glycoside hydrolase and polysaccharide lyase structures: new folds, mechanistic details, and evolutionary relationships. (2013)

Fushinobu S, Alves VD, Coutinho PM.

Curr Opin Struct Biol 23 652-9 PMID:23816329
The identification and molecular characterization of the first archaeal bifunctional exo-beta-glucosidase/N-acetyl-beta-glucosaminidase demonstrates that family GH116 is made of three functionally distinct subfamilies. (2013)

Ferrara MC, Cobucci-Ponzano B, Carpentieri A, Henrissat B, Rossi M, Amoresano A, Moracci M.

Biochim Biophys Acta 840 (1) 367-377 PMID:24060745
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga . (2013)

Flot JF, Hespeels B, Li X, Noel B, Arkhipova I, Danchin EG, Hejnol A, Henrissat B, Koszul R, Aury JM, Barbe V, Barthelemy RM, Bast J, Bazykin GA, Chabrol O, Couloux A, Da Rocha M, Da Silva C, Gladyshev E, Gouret P, Hallatschek O, Hecox-Lea B, Labadie K, Lejeune B, Piskurek O, Poulain J, Rodriguez F, Ryan JF, Vakhrusheva OA, Wajnberg E, Wirth B, Yushenova I, Kellis M, Kondrashov AS, Mark Welch DB, Pontarotti P, Weissenbach J, Wincker P, Jaillon O, Van Doninck K.

Nature 500 453-7 PMID:23873043
Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus . (2013)

Patyshakuliyeva A, Jurak E, Kohler A, Baker A, Battaglia E, de Bruijn W, Burton KS, Challen MP, Coutinho PM, Eastwood DC, Gruben BS, Makela MR, Martin F, Nadal M, van den Brink J, Wiebenga A, Zhou M, Henrissat B, Kabel M, Gruppen H, de Vries RP.

BMC Genomics 14 663 PMID:24074284
Functional metagenomics reveals novel pathways of prebiotic breakdown by human gut bacteria. (2013)

Cecchini DA, Laville E, Laguerre S, Robe P, Leclerc M, Dore J, Henrissat B, Remaud-Simeon M, Monsan P, Potocki-Veronese G.

PLoS One 8 e72766 PMID:24066026
Gut microbiota from twins discordant for obesity modulate metabolism in mice. (2013)

Ridaura VK, Faith JJ, Rey FE, Cheng J, Duncan AE, Kau AL, Griffin NW, Lombard V, Henrissat B, Bain JR, Muehlbauer MJ, Ilkayeva O, Semenkovich CF, Funai K, Hayashi DK, Lyle BJ, Martini MC, Ursell LK, Clemente JC, Van Treuren W, Walters WA, Knight R, Newgard CB, Heath AC, Gordon JI.

Science 341 1241214 PMID:24009397
Mining for hemicellulases in the fungus-growing termite Pseudacanthotermes militaris using functional metagenomics. (2013)

Bastien G, Arnal G, Bozonnet S, Laguerre S, Ferreira F, Faure R, Henrissat B, Lefevre F, Robe P, Bouchez O, Noirot C, Dumon C, O Donohue M.

Biotechnol Biofuels 6 78 PMID:23672637
Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome. (2013)

McNulty NP, Wu M, Erickson AR, Pan C, Erickson BK, Martens EC, Pudlo NA, Muegge BD, Henrissat B, Hettich RL, Gordon JI.

PLoS Biol 11 e1001637 PMID:23976882
Dissecting partner recognition by an intrinsically disordered protein using descriptive random mutagenesis. (2013)

Gruet A, Dosnon M, Vassena A, Lombard V, Gerlier D, Bignon C, Longhi S.

J Mol Biol 425 3495-509 PMID:23811056
Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot Polyporales provides insight into mechanisms of wood decay. (2013)

Hori C, Gaskell J, Igarashi K, Samejima M, Hibbett DS, Henrissat B, Cullen D.

Mycologia 105(16) 1412-27 PMID:23935027
Exploring family 6 glycoside hydrolases from Podospora anserina : insights into exo- and endo-glucanase activities. (2013)

Poidevin L, Feliu J, Doan A, Berrin JG, Bey M, Coutinho PM, Henrissat B, Record E, Heiss-Blanquet S.

Appl Environ Microbiol 79 4220-9 PMID:23645193
Genome of the red alga Porphyridium purpureum. (2013)

Bhattacharya D, Price DC, Xin Chan C, Qiu H, Rose N, Ball S, Weber AP, Cecilia Arias M, Henrissat B, Coutinho PM, Krishnan A, Zauner S, Morath S, Hilliou F, Egizi A, Perrineau MM, Yoon HS.

Nat Commun 4 1941 PMID:23770768
Characterization of salt-adapted secreted lignocellulolytic enzymes from the mangrove fungus Pestalotiopsis sp. (2013)

Arfi Y, Chevret D, Henrissat B, Berrin JG, Levasseur A, Record E.

Nat Commun 4 1810 PMID:23651998
Genomic Evaluation of Thermoanaerobacter spp. for the Construction of Designer Co-Cultures to Improve Lignocellulosic Biofuel Production. (2013)

Verbeke TJ, Zhang X, Henrissat B, Spicer V, Rydzak T, Krokhin OV, Fristensky B, Levin DB, Sparling R.

PLoS One 8 e59362 PMID:23555660
The structure of a Streptomyces avermitilis alpha-L-rhamnosidase reveals a novel carbohydrate-binding module CBM67 within the six-domain arrangement. (2013)

Fujimoto Z, Jackson A, Michikawa M, Maehara T, Momma M, Henrissat B, Gilbert HJ, Kaneko S.

J Biol Chem 288 12376-85 PMID:23486481
Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes. (2013)

Levasseur A, Drula E, Lombard V, Coutinho PM, Henrissat B.

Biotechnol Biofuels 6 41 PMID:23514094
Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis , Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence. (2013)

Manning VA, Pandelova I, Dhillon B, Wilhelm LJ, Goodwin SB, Berlin AM, Figueroa M, Freitag M, Hane JK, Henrissat B, Holman WH, Kodira CD, Martin J, Oliver RP, Robbertse B, Schackwitz W, Schwartz DC, Spatafora JW, Turgeon BG, Yandava C, Young S, Zhou S, Zeng Q, Grigoriev IV, Ma LJ, Ciuffetti LM.

G3 (Bethesda) 3 41-63 PMID:23316438
Cello-Oligosaccharide Oxidation Reveals Differences between Two Lytic Polysaccharide Monooxygenases (Family GH61) from Podospora anserina (2013)

Bey M, Zhou S, Poidevin L, Henrissat B, Coutinho PM, Berrin JG, Sigoillot JC.

Appl Environ Microbiol 79 488-96 PMID:23124232

2012

How nature can exploit nonspecific catalytic and carbohydrate binding modules to create enzymatic specificity. (2012)

Cuskin F, Flint JE, Gloster TM, Morland C, Basle A, Henrissat B, Coutinho PM, Strazzulli A, Solovyova AS, Davies GJ, Gilbert HJ.

Proc Natl Acad Sci U S A 109 20889-94 PMID:23213210
Peptidoglycan: a post-genomic analysis. (2012)

Cayrou C, Henrissat B, Gouret P, Pontarotti P, Drancourt M.

BMC Microbiol 12 294 PMID:23249425
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen dothideomycetes fungi. (2012)

Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, Labutti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GH, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PJ, Zhong S, Goodwin SB, Grigoriev IV.

PLoS Pathog 8 e1003037 PMID:23236275
Exploring natural fungal biodiversity from tropical and temperate forests to improve biomass conversion. (2012)

Berrin JG, Navarro D, Couturier M, Olive C, Grisel S, Haon M, Taussac S, Lechat C, Courtecuisse R, Favel A, Coutinho PM, Lesage-Meessen L.

Appl Environ Microbiol 78 6483-90 PMID:22773628
Effects of Dietary Fiber on the Feline Gastrointestinal Metagenome. (2012)

Barry KA, Middelbos IS, Vester Boler BM, Dowd SE, Suchodolski JS, Henrissat B, Coutinho PM, White BA, Fahey GC Jr, Swanson KS.

J Proteome Res 11 5924-5933 PMID:23075436
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. (2012)

Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, Elias M, Eveleigh RJ, Herman EK, Klute MJ, Nakayama T, Obornik M, Reyes-Prieto A, Armbrust EV, Aves SJ, Beiko RG, Coutinho P, Dacks JB, Durnford DG, Fast NM, Green BR, Grisdale CJ, Hempel F, Henrissat B, Hoppner MP, Ishida KI, Kim E, Koreny L, Kroth PG, Liu Y, Malik SB, Maier UG, McRose D, Mock T, Neilson JA, Onodera NT, Poole AM, Pritham EJ, Richards TA, Rocap G, Roy SW, Sarai C, Schaack S, Shirato S, Slamovits CH, Spencer DF, Suzuki S, Worden AZ, Zauner S, Barry K, Bell C, Bharti AK, Crow JA, Grimwood J, Kramer R, Lindquist E, Lucas S, Salamov A, McFadden GI, Lane CE, Keeling PJ, Gray MW, Grigoriev IV, Archibald JM.

Nature 492 59-65 PMID:23201678
The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry. (2012)

de Wit PJ, van der Burgt A, Okmen B, Stergiopoulos I, Abd-Elsalam KA, Aerts AL, Bahkali AH, Beenen HG, Chettri P, Cox MP, Datema E, de Vries RP, Dhillon B, Ganley AR, Griffiths SA, Guo Y, Hamelin RC, Henrissat B, Kabir MS, Jashni MK, Kema G, Klaubauf S, Lapidus A, Levasseur A, Lindquist E, Mehrabi R, Ohm RA, Owen TJ, Salamov A, Schwelm A, Schijlen E, Sun H, van den Burg HA, van Ham RC, Zhang S, Goodwin SB, Grigoriev IV, Collemare J, Bradshaw RE.

PLoS Genet 8 e1003088 PMID:23209441
Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease. (2012)

Erickson AR, Cantarel BL, Lamendella R, Darzi Y, Mongodin EF, Pan C, Shah M, Halfvarson J, Tysk C, Henrissat B, Raes J, Verberkmoes NC, Fraser CM, Hettich RL, Jansson JK.

PLoS One 7 e49138 PMID:23209564
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. (2012)

Morin E, Kohler A, Baker AR, Foulongne-Oriol M, Lombard V, Nagy LG, Ohm RA, Patyshakuliyeva A, Brun A, Aerts AL, Bailey AM, Billette C, Coutinho PM, Deakin G, Doddapaneni H, Floudas D, Grimwood J, Hilden K, Kues U, Labutti KM, Lapidus A, Lindquist EA, Lucas SM, Murat C, Riley RW, Salamov AA, Schmutz J, Subramanian V, Wosten HA, Xu J, Eastwood DC, Foster GD, Sonnenberg AS, Cullen D, de Vries RP, Lundell T, Hibbett DS, Henrissat B, Burton KS, Kerrigan RW, Challen MP, Grigoriev IV, Martin F.

Proc Natl Acad Sci U S A 109 17501-17506 PMID:23045686
A family GH51 α-L-arabinofuranosidase from Pleurotus ostreatus: identification, recombinant expression and characterization. (2012)

Amore A, Amoresano A, Birolo L, Henrissat B, Leo G, Palmese A, Faraco V.

Appl Microbiol Biotechnol 94 995-1006 PMID:22080345
Transcriptome analysis of Stagonospora nodorum: gene models, effectors, metabolism and pantothenate dispensability. (2012)

Ipcho SV, Hane JK, Antoni EA, Ahren D, Henrissat B, Friesen TL, Solomon PS, Oliver RP.

Mol Plant Pathol 13 531-545 PMID:22145589
Genome sequence of the model medicinal mushroom Ganoderma lucidum. (2012)

Chen S, Xu J, Liu C, Zhu Y, Nelson DR, Zhou S, Li C, Wang L, Guo X, Sun Y, Luo H, Li Y, Song J, Henrissat B, Levasseur A, Qian J, Li J, Luo X, Shi L, He L, Xiang L, Xu X, Niu Y, Li Q, Han MV, Yan H, Zhang J, Chen H, Lv A, Wang Z, Liu M, Schwartz DC, Sun C.

Nature Commun 3 913 PMID:22735441
Genome-wide analysis of Acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system. (2012)

Dassa B, Borovok I, Lamed R, Henrissat B, Coutinho P, Hemme CL, Huang Y, Zhou J, Bayer EA.

BMC Genomics 13 210 PMID:22646801
Bifidobacterium asteroides PRL2011 Genome Analysis Reveals Clues for Colonization of the Insect Gut. (2012)

Bottacini F, Milani C, Turroni F, Sanchez B, Foroni E, Duranti S, Serafini F, Viappiani A, Strati F, Ferrarini A, Delledonne M, Henrissat B, Coutinho P, Fitzgerald GF, Margolles A, van Sinderen D, Ventura M.

PLoS One 7 e44229 PMID:23028506
Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize. (2012)

Suzuki H, Macdonald J, Syed K, Salamov A, Hori C, Aerts A, Henrissat B, Wiebenga A, Vankuyk PA, Barry K, Lindquist E, Labutti K, Lapidus A, Lucas S, Coutinho P, Gong Y, Samejima M, Mahadevan R, Abou-Zaid M, de Vries RP, Igarashi K, Yadav JS, Grigoriev IV, Master ER.

BMC Genomics 13 444 PMID:22937793
Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants. (2012)

Arias MC, Danchin EG, Coutinho P, Henrissat B, Ball S.

Mob Genet Elements 2 81-87 PMID:22934241
Functional Analysis of Family GH36 α-Galactosidases from Ruminococcus gnavus E1: Insights into the Metabolism of a Plant Oligosaccharide by a Human Gut Symbiont. (2012)

Cervera-Tison M, Tailford LE, Fuell C, Bruel L, Sulzenbacher G, Henrissat B, Berrin JG, Fons M, Giardina T, Juge N.

Appl Environ Microbiol 78 7720-7732 PMID:22923411
Complex carbohydrate utilization by the healthy human microbiome. (2012)

Cantarel BL, Lombard V, Henrissat B.

PLoS One 7 e28742 PMID:22719820
Metabolic reconstruction for metagenomic data and its application to the human microbiome. (2012)

Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methe B, Schloss PD, Gevers D, Mitreva M, Huttenhower C.

PLoS Comput Biol 8 e1002358 PMID:22719234
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses. (2012)

OConnell RJ, Thon MR, Hacquard S, Amyotte SG, Kleemann J, Torres MF, Damm U, Buiate EA, Epstein L, Alkan N, Altmuller J, Alvarado-Balderrama L, Bauser CA, Becker C, Birren BW, Chen Z, Choi J, Crouch JA, Duvick JP, Farman MA, Gan P, Heiman D, Henrissat B, Howard RJ, Kabbage M, Koch C, Kracher B, Kubo Y, Law AD, Lebrun MH, Lee YH, Miyara I, Moore N, Neumann U, Nordstrom K, Panaccione DG, Panstruga R, Place M, Proctor RH, Prusky D, Rech G, Reinhardt R, Rollins JA, Rounsley S, Schardl CL, Schwartz DC, Shenoy N, Shirasu K, Sikhakolli UR, Stuber K, Sukno SA, Sweigard JA, Takano Y, Takahara H, Trail F, van der Does HC, Voll LM, Will I, Young S, Zeng Q, Zhang J, Zhou S, Dickman MB, Schulze-Lefert P, Ver Loren van Themaat E, Ma LJ, Vaillancourt LJ.

Nature Genet 44 1060-1065 PMID:22885923
Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5). (2012)

Aspeborg H, Coutinho PM, Wang Y, Brumer H 3rd, Henrissat B.

BMC Evol Biol 12 186 PMID:22992189
Degradation of different pectins by fungi: correlations and contrasts between the pectinolytic enzyme sets identified in genomes and the growth on pectins of different origin. (2012)

Benoit I, Coutinho PM, Schols HA, Gerlach JP, Henrissat B, de Vries RP.

BMC Genomics 13 321 PMID:22812459
The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. (2012)

Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, Martinez AT, Otillar R, Spatafora JW, Yadav JS, Aerts A, Benoit I, Boyd A, Carlson A, Copeland A, Coutinho PM, de Vries RP, Ferreira P, Findley K, Foster B, Gaskell J, Glotzer D, Gorecki P, Heitman J, Hesse C, Hori C, Igarashi K, Jurgens JA, Kallen N, Kersten P, Kohler A, Kues U, Kumar TK, Kuo A, LaButti K, Larrondo LF, Lindquist E, Ling A, Lombard V, Lucas S, Lundell T, Martin R, McLaughlin DJ, Morgenstern I, Morin E, Murat C, Nagy LG, Nolan M, Ohm RA, Patyshakuliyeva A, Rokas A, Ruiz-Duenas FJ, Sabat G, Salamov A, Samejima M, Schmutz J, Slot JC, St John F, Stenlid J, Sun H, Sun S, Syed K, Tsang A, Wiebenga A, Young D, Pisabarro A, Eastwood DC, Martin F, Cullen D, Grigoriev IV, Hibbett DS.

Science 336 1715-9 PMID:22745431
Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen. (2012)

Olson A, Aerts A, Asiegbu F, Belbahri L, Bouzid O, Broberg A, Canback B, Coutinho PM, Cullen D, Dalman K, Deflorio G, van Diepen LT, Dunand C, Duplessis S, Durling M, Gonthier P, Grimwood J, Fossdal CG, Hansson D, Henrissat B, Hietala A, Himmelstrand K, Hoffmeister D, Hogberg N, James TY, Karlsson M, Kohler A, Kues U, Lee YH, Lin YC, Lind M, Lindquist E, Lombard V, Lucas S, Lunden K, Morin E, Murat C, Park J, Raffaello T, Rouze P, Salamov A, Schmutz J, Solheim H, Stahlberg J, Velez H, de Vries RP, Wiebenga A, Woodward S, Yakovlev I, Garbelotto M, Martin F, Grigoriev IV, Stenlid J.

New Phytol 194 1001-1013 PMID:22463738
Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis. (2012)

Fernandez-Fueyo E, Ruiz-Duenas FJ, Ferreira P, Floudas D, Hibbett DS, Canessa P, Larrondo LF, James TY, Seelenfreund D, Lobos S, Polanco R, Tello M, Honda Y, Watanabe T, Watanabe T, San RJ, Kubicek CP, Schmoll M, Gaskell J, Hammel KE, St John FJ, Vanden Wymelenberg A, Sabat G, Splinter Bondurant S, Syed K, Yadav JS, Doddapaneni H, Subramanian V, Lavin JL, Oguiza JA, Perez G, Pisabarro AG, Ramirez L, Santoyo F, Master E, Coutinho PM, Henrissat B, Lombard V, Magnuson JK, Kues U, Hori C, Igarashi K, Samejima M, Held BW, Barry KW, Labutti KM, Lapidus A, Lindquist EA, Lucas SM, Riley R, Salamov AA, Hoffmeister D, Schwenk D, Hadar Y, Yarden O, de Vries RP, Wiebenga A, Stenlid J, Eastwood D, Grigoriev IV, Berka RM, Blanchette RA, Kersten P, Martinez AT, Vicuna R, Cullen D.

Proc Natl Acad Sci U S A 109 5458-5463 PMID:22434909
Carbohydrate-active enzymes revealed in Coptotermes formosanus (Isoptera: Rhinotermitidae) transcriptome. (2012)

Zhang D, Lax AR, Henrissat B, Coutinho P, Katiya N, Nierman WC, Fedorova N.

Insect Mol Biol 21 235-245 PMID:22243654
Genome analyses highlight the different biological roles of cellulases. (2012)

Medie FM, Davies GJ, Drancourt M, Henrissat B.

Nat Rev Microbiol 10 227-234 PMID:22266780
Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants. (2012)

Price DC, Chan CX, Yoon HS, Yang EC, Qiu H, Weber AP, Schwacke R, Gross J, Blouin NA, Lane C, Reyes-Prieto A, Durnford DG, Neilson JA, Lang BF, Burger G, Steiner JM, Loffelhardt W, Meuser JE, Posewitz MC, Ball S, Arias MC, Henrissat B, Coutinho PM, Rensing SA, Symeonidi A, Doddapaneni H, Green BR, Rajah VD, Boore J, Bhattacharya D.

Science 335 843-7 PMID:22344442
Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis. (2012)

Couturier M, Navarro D, Olive C, Chevret D, Haon M, Favel A, Lesage-Meessen L, Henrissat B, Coutinho PM, Berrin JG.

BMC Genomics 13 57 PMID:22300648

2011

Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. (2011)

Martens EC, Lowe EC, Chiang H, Pudlo NA, Wu M, McNulty NP, Abbott DW, Henrissat B, Gilbert HJ, Bolam DN, Gordon JI.

PLoS Biol 9 e1001221 PMID:22205877
A thermostable GH45 endoglucanase from yeast: impact of its atypical multimodularity on activity. (2011)

Couturier M, Feliu J, Haon M, Navarro D, Lesage-Meessen L, Coutinho PM, Berrin JG.

Microb Cell Fact 10 103 PMID:22145993
The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. (2011)

McNulty NP, Yatsunenko T, Hsiao A, Faith JJ, Muegge BD, Goodman AL, Henrissat B, Oozeer R, Cools-Portier S, Gobert G, Chervaux C, Knights D, Lozupone CA, Knight R, Duncan AE, Bain JR, Muehlbauer MJ, Newgard CB, Heath AC, Gordon JI.

Sci Transl Med 3 106ra106 PMID:22030749
Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris . (2011)

Berka RM, Grigoriev IV, Otillar R, Salamov A, Grimwood J, Reid I, Ishmael N, John T, Darmond C, Moisan MC, Henrissat B, Coutinho PM, Lombard V, Natvig DO, Lindquist E, Schmutz J, Lucas S, Harris P, Powlowski J, Bellemare A, Taylor D, Butler G, de Vries RP, Allijn IE, van den Brink J, Ushinsky S, Storms R, Powell AJ, Paulsen IT, Elbourne LD, Baker SE, Magnuson J, Laboissiere S, Clutterbuck AJ, Martinez D, Wogulis M, de Leon AL, Rey MW, Tsang A.

Nature Biotechnol 29 922-927 PMID:21964414
The Cyst-Dividing Bacterium Ramlibacter tataouinensis TTB310 Genome Reveals a Well-Stocked Toolbox for Adaptation to a Desert Environment. (2011)

De Luca G, Barakat M, Ortet P, Fochesato S, Jourlin-Castelli C, Ansaldi M, Py B, Fichant G, Coutinho PM, Voulhoux R, Bastien O, Marechal E, Henrissat B, Quentin Y, Noirot P, Filloux A, Mejean V, Dubow MS, Barras F, Barbe V, Weissenbach J, Mihalcescu I, Vermeglio A, Achouak W, Heulin T.

PLoS One 6 e23784 PMID:21912644
Carbohydrate-active enzymes from pigmented Bacilli: a genomic approach to assess carbohydrate utilization and degradation. (2011)

Manzo N, D'Apuzzo E, Coutinho PM, Cutting SM, Henrissat B, Ricca E.

BMC Microbiol 11 198 PMID:21892951
Crystal structure of α-galactosidase from Lactobacillus acidophilus NCFM: Insight into tetramer formation and substrate binding. (2011)

Fredslund F, Hachem MA, Larsen RJ, Sorensen PG, Coutinho PM, Leggio LL, Svensson B.

J Mol Biol 412 466-480 PMID:21827767
Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea . (2011)

Amselem J, Cuomo CA, van Kan JA, Viaud M, Benito EP, Couloux A, Coutinho PM, de Vries RP, Dyer PS, Fillinger S, Fournier E, Gout L, Hahn M, Kohn L, Lapalu N, Plummer KM, Pradier JM, Quevillon E, Sharon A, Simon A, Ten Have A, Tudzynski B, Tudzynski P, Wincker P, Andrew M, Anthouard V, Beever RE, Beffa R, Benoit I, Bouzid O, Brault B, Chen Z, Choquer M, Collemare J, Cotton P, Danchin EG, Da Silva C, Gautier A, Giraud C, Giraud T, Gonzalez C, Grossetete S, Guldener U, Henrissat B, Howlett BJ, Kodira C, Kretschmer M, Lappartient A, Leroch M, Levis C, Mauceli E, Neuveglise C, Oeser B, Pearson M, Poulain J, Poussereau N, Quesneville H, Rascle C, Schumacher J, Segurens B, Sexton A, Silva E, Sirven C, Soanes DM, Talbot NJ, Templeton M, Yandava C, Yarden O, Zeng Q, Rollins JA, Lebrun MH, Dickman M.

PLoS Genet 7 e1002230 PMID:21876677
Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens. (2011)

Klosterman SJ, Subbarao KV, Kang S, Veronese P, Gold SE, Thomma BP, Chen Z, Henrissat B, Lee YH, Park J, Garcia-Pedrajas MD, Barbara DJ, Anchieta A, de Jonge R, Santhanam P, Maruthachalam K, Atallah Z, Amyotte SG, Paz Z, Inderbitzin P, Hayes RJ, Heiman DI, Young S, Zeng Q, Engels R, Galagan J, Cuomo CA, Dobinson KF, Ma LJ.

PLoS Pathog 7 e1002137 PMID:21829347
The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi. (2011)

Eastwood DC, Floudas D, Binder M, Majcherczyk A, Schneider P, Aerts A, Asiegbu FO, Baker SE, Barry K, Bendiksby M, Blumentritt M, Coutinho PM, Cullen D, de Vries RP, Gathman A, Goodell B, Henrissat B, Ihrmark K, Kauserud H, Kohler A, Labutti K, Lapidus A, Lavin JL, Lee YH, Lindquist E, Lilly W, Lucas S, Morin E, Murat C, Oguiza JA, Park J, Pisabarro AG, Riley R, Rosling A, Salamov A, Schmidt O, Schmutz J, Skrede I, Stenlid J, Wiebenga A, Xie X, Kues U, Hibbett DS, Hoffmeister D, Hogberg N, Martin F, Grigoriev IV, Watkinson SC.

Science 333 762-765 PMID:21764756
A novel, non-catalytic carbohydrate-binding modules displays specificity for galactose-containing polysaccharides through calcium-mediated oligomerization. (2011)

Montanier CY, Correia MA, Flint JE, Zhu Y, McKee LS, Prates JA, Polizzi SJ, Coutinho PM, Lewis RJ, Henrissat B, Fontes CM, Gilbert HJ.

J Biol Chem 286 22499-22509 PMID:21454512
Mimivirus shows dramatic genome reduction after intraamoebal culture. (2011)

Boyer M, Azza S, Barrassi L, Klose T, Campocasso A, Pagnier I, Fournous G, Borg A, Robert C, Zhang X, Desnues C, Henrissat B, Rossmann MG, La Scola B, Raoult D.

Proc Natl Acad Sci U S A 108 10296-10301 PMID:21646533
Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis (2011)

Goodwin SB, Ben M'Barek S, Dhillon B, Wittenberg AHJ, Crane CF, Hane JK, Foster AJ, Van der Lee TAJ, Grimwood J, Aerts A, Antoniw J, Bailey A, Bluhm B, Bowler J, Bristow J, van der Burgt A, Canto-Canche B, Churchill ACL, Conde-Ferraez L, Cools HJ, Coutinho PM, Csukai M, Dehal P, De Wit P, Donzelli B, van de Geest HC, van Ham RCHJ, Hammond-Kosack KE, Henrissat B, Kilian A, Kobayashi AK, Koopmann E, Kourmpetis V, Kuzniar A, Lindquist E, Lombard V, Maliepaard C, Martins N, Mehrabi R, Nap JPH, Ponomarenko A, Rudd JJ, Salamov A, Schmutz J, Schouten HJ, Shapiro H, Stergiopoulos I, Torriani SFF, Tu H, de Vries RP, Waalwijk C, Ware SB, Wiebenga A, Zwiers L-H, Oliver RP, Grigoriev IV, Kema GHJ.

PLoS Genet. 7(6) e1002070 PMID:21695235
Mycobacterium tuberculosis Complex Mycobacteria as Amoeba-Resistant Organisms. (2011)

Mba Medie F, Ben Salah I, Henrissat B, Raoult D, Drancourt M.

PLoS One 6 e20499 PMID:21673985
Obligate biotrophy features unraveled by the genomic analysis of rust fungi. (2011)

Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, Joly DL, Hacquard S, Amselem J, Cantarel BL, Chiu R, Coutinho PM, Feau N, Field M, Frey P, Gelhaye E, Goldberg J, Grabherr MG, Kodira CD, Kohler A, Kues U, Lindquist EA, Lucas SM, Mago R, Mauceli E, Morin E, Murat C, Pangilinan JL, Park R, Pearson M, Quesneville H, Rouhier N, Sakthikumar S, Salamov AA, Schmutz J, Selles B, Shapiro H, Tanguay P, Tuskan GA, Henrissat B, Van de Peer Y, Rouze P, Ellis JG, Dodds PN, Schein JE, Zhong S, Hamelin RC, Grigoriev IV, Szabo LJ, Martin F.

Proc Natl Acad Sci U S A 108 9166-9171 PMID:21536894
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. (2011)

Muegge BD, Kuczynski J, Knights D, Clemente JC, Gonzalez A, Fontana L, Henrissat B, Knight R, Gordon JI.

Science 332 970-974 PMID:21596990
Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725. (2011)

Dam P, Kataeva I, Yang SJ, Zhou F, Yin Y, Chou W, Poole FL 2nd, Westpheling J, Hettich R, Giannone R, Lewis DL, Kelly R, Gilbert HJ, Henrissat B, Xu Y, Adams MW.

Nucleic Acids Res 39 3240-3254 PMID:21227922
The α-glucuronidase Agu1 from Schizophyllum commune is a member of a novel glycoside hydrolase family (GH115) (2011)

Chong SL, Battaglia E, Coutinho PM, Henrissat B, Maija Tenkanen M, de Vries RP.

Appl. Microbiol. Biotechnol. 90 1323-1332 PMID:21442271
Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. (2011)

Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, Atanasova L, Cervantes-Badillo MG, Challacombe J, Chertkov O, McCluskey K, Coulpier F, Deshpande N, von Doehren H, Ebbole DJ, Esquivel-Naranjo EU, Fekete E, Flipphi M, Glaser F, Gomez-Rodriguez EY, Gruber S, Han C, Henrissat B, Hermosa R, Hernandez-Onate M, Karaffa L, Kosti I, Le Crom S, Lindquist E, Lucas S, Lubeck M, Lubeck PS, Margeot A, Metz B, Misra M, Nevalainen H, Omann M, Packer N, Perrone G, Uresti-Rivera EE, Salamov A, Schmoll M, Seiboth B, Shapiro H, Sukno S, Tamayo-Ramos JA, Tisch D, Wiest A, Wilkinson HH, Zhang M, Coutinho PM, Kenerley CM, Monte E, Baker SE, Grigoriev IV.

Genome Biol 12 R40 PMID:21501500
Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice. (2011)

Swanson KS, Dowd SE, Suchodolski JS, Middelbos IS, Vester BM, Barry KA, Nelson KE, Torralba M, Henrissat B, Coutinho PM, Cann IK, White BA, Fahey GC Jr.

ISME J 5 639-649 PMID:20962874
Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum. (2011)

Sucgang R, Kuo A, Tian X, Salerno W, Parikh A, Feasley CL, Dalin E, Tu H, Huang E, Barry K, Lindquist E, Shapiro H, Bruce D, Schmutz J, Salamov A, Fey P, Gaudet P, Anjard C, Babu MM, Basu S, Bushmanova Y, van der Wel H, Katoh-Kurasawa M, Dinh C, Coutinho PM, Saito T, Elias M, Schaap P, Kay RR, Henrissat B, Eichinger L, Rivero F, Putnam NH, West CM, Loomis WF, Chisholm RL, Shaulsky G, Strassmann JE, Queller DC, Kuspa A, Grigoriev IV.

Genome Biol 12 R20 PMID:21356102
Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen. (2011)

Diguistini S, Wang Y, Liao NY, Taylor G, Tanguay P, Feau N, Henrissat B, Chan SK, Hesse-Orce U, Alamouti SM, Tsui CK, Docking RT, Levasseur A, Haridas S, Robertson G, Birol I, Holt RA, Marra MA, Hamelin RC, Hirst M, Jones SJ, Bohlmann J, Breuil C.

Proc Natl Acad Sci U S A 108 2504-2509 PMID:21262841
Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: an highly specialized approach to carbohydrate degradation depicted at genome level. (2011)

Battaglia E, Benoit I, van den Brink J, Wiebenga A, Coutinho PM, Henrissat B, de Vries RP.

BMC Genomics 12 38 PMID:21241472
Podospora anserina hemicellulases potentiate Trichoderma reesei secretome for the saccharification of lignocellulosic biomass. (2011)

Couturier M, Haon M, Coutinho PM, Henrissat B, Lesage-Meessen L, Berrin JG.

Appl Environ Microbiol 77 237-246 PMID:21037302
Mycobacterium tuberculosis Rv1090 and Rv1987 encode functional b-glucan-targeting proteins (2011)

Mba Medie F, Vincentelli R, Drancourt M, Henrissat B.

Prot Express. Purif. 75 172-176 PMID:20826214

2010

Paradoxal conservation of a set of three cellulose-targeting genes in Mycobacterium tuberculosis complex organisms. (2010)

Mba Medie F, Ben Salah I, Drancourt M, Henrissat B.

Microbiology 156 1468-75 PMID:20150238
Structure of a polyisoprenoid binding domain from Saccharophagus degradans implicated in plant cell wall breakdown. (2010)

Vincent F, Molin DD, Weiner RM, Bourne Y, Henrissat B.

FEBS Lett 584 1577-84 PMID:20227408
Genome Announcement: Sequencing of Multiple Clostridia Genomes Related to Biomass Conversion and Biofuels Production. (2010)

Hemme CL, Mouttaki H, Lee YJ, Goodwin L, Lucas S, Copeland A, Lapidus A, Glavina Del Rio T, Tice H, Saunders E, Brettin T, Detter JC, Han CS, Pitluck S, Land ML, Hauser LJ, Krypides N, Mikhailova N, He Z, Wu L, Van Nostrand JD, Henrissat B, He Q, Lawson PA, Tanner RS, Lynd LR, Wiegel J, Fields MW, Arkin AP, Schadt CW, Stevenson BS, McInerney MJ, Yang Y, Dong H, Huhnke RL, Mielenz JR, Ding SY, Himmel ME, Taghavi S, van der Lelie D, Rubin EM, Zhou J.

J Bacteriol 192 6494-6496 PMID:20889752
A hierarchical classification of polysaccharide lyases for glycogenomics (2010)

Lombard V, Bernard T, Rancurel C, Brumer H, Coutinho PM, Henrissat B.

Biochem. J. 432 437-444 PMID:20925655
Recognition of the helical structure of β-1,4-galactan by a new family of carbohydrate-binding modules. (2010)

Cid M, Lodberg Pedersen H, Kaneko S, Coutinho PM, Henrissat B, Willats WG, Boraston AB.

J Biol Chem 285 35999-36009 PMID:20826814
Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging. (2010)

Turroni F, Bottacini F, Foroni E, Mulder I, Kim JH, Zomer A, Sanchez B, Bidossi A, Ferrarini A, Giubellini V, Delledonne M, Henrissat B, Coutinho P, Oggioni M, Fitzgerald GF, Mills D, Margolles A, Kelly D, van Sinderen D, Ventura M.

Proc Natl Acad Sci U S A 107 19514-19519 PMID:20974960
Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche. (2010)

Purushe J, Fouts DE, Morrison M, White BA, Mackie RI, Coutinho PM, Henrissat B, Nelson KE.

Microb Ecol 60 721-729 PMID:20585943
Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes. (2010)

Tasse L, Bercovici J, Pizzut-Serin S, Robe P, Tap J, Klopp C, Cantarel BL, Coutinho PM, Henrissat B, Leclerc M, Dore J, Monsan P, Remaud-Simeon M, Potocki-Veronese G.

Genome Res 20 1605-1612 PMID:20841432
Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes. (2010)

Danchin EG, Rosso MN, Vieira P, de Almeida-Engler J, Coutinho PM, Henrissat B, Abad P.

Proc Natl Acad Sci U S A 107 17651-17656 PMID:20876108
Viewing the human microbiome through three-dimensional glasses: integrating structural and functional studies to better define the properties of myriad carbohydrate-active enzymes. (2010)

Turnbaugh PJ, Henrissat B, Gordon JI.

Acta Crystallogr Sect F Struct Biol Cryst Commun 66 1261-4 PMID:20944220
Genome sequence of the model mushroom Schizophyllum commune (2010)

Ohm RA, de Jong JF, Lugones LG, Aerts A, Kothe E, Stajich JE, de Vries RP, Record E, Levasseur A, Baker SE, Bartholomew KA, Coutinho PM, Erdmann S, Fowler TJ, Gathman AC, Lombard V, Henrissat B, Knabe N, Kues U, Lilly WW, Lindquist E, Lucas S, Magnuson JK, Piumi F, Raudaskoski M, Salamov A, Schmutz J, Schwarze FW, Vankuyk PA, Horton JS, Grigoriev IV, Wosten HA.

Nat Biotechnol 28 957-963 PMID:20622885
Abundance and Diversity of Dockerin-Containing Proteins in the Fiber-Degrading Rumen Bacterium, Ruminococcus flavefaciens FD-1. (2010)

Rincon MT, Dassa B, Flint HJ, Travis AJ, Jindou S, Borovok I, Lamed R, Bayer EA, Henrissat B, Coutinho PM, Antonopoulos DA, Berg Miller ME, White BA.

PLoS ONE 5(8) e12476 PMID:20814577
Signature active site architectures illuminate the molecular basis for ligand specificity in family 35 carbohydrate binding modules (2010)

Correia MA, Abbott DW, Gloster TM, Ondina Fernandes V, Prates JA, Montanier C, Dumon C, Williamson MP, Tunnicliffe RB, Liu Z, Flint J, Davies GJ, Henrissat B, Coutinho PM, Fontes CM, Gilbert HJ.

Biochemistry 49 6193-6205 PMID:20496884
Genome sequence of the necrotrophic plant pathogen, Pythium ultimum, reveals original pathogenicity mechanisms and effector repertoire. (2010)

Levesque CA, Brouwer H, Cano L, Hamilton JP, Holt C, Huitema E, Raffaele S, Robideau GP, Thines M, Win J, Zerillo MM, Beakes GW, Boore JL, Busam D, Dumas B, Ferriera S, Fuerstenberg SI, Gachon CM, Gaulin E, Govers F, Grenville-Briggs L, Horner N, Hostetler J, Jiang RH, Johnson J, Krajaejun T, Lin H, Meijer HJ, Moore B, Morris P, Phuntmart V, Puiu D, Shetty J, Stajich JE, Tripathy S, Wawra S, van West P, Whitty BR, Coutinho PM, Henrissat B, Martin F, Thomas PD, Tyler BM, De Vries RP, Kamoun S, Yandell M, Tisserat N, Buell CR.

Genome Biol 11 R73 PMID:20626842
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. (2010)

Turnbaugh PJ, Quince C, Faith JJ, McHardy AC, Yatsunenko T, Niazi F, Affourtit J, Egholm M, Henrissat B, Knight R, Gordon JI.

Proc Natl Acad Sci U S A 107 7503-7508 PMID:20363958
Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis (2010)

Martin F, Kohler A, Murat C, Balestrini R, Coutinho PM, Jaillon O, Montanini B, Morin E, Noel B, Percudani R, Porcel B, Rubini A, Amicucci A, Amselem J, Anthouard V, Arcioni S, Artiguenave F, Aury JM, Ballario P, Bolchi A, Brenna A, Brun A, Buée M, Cantarel B, Chevalier G, Couloux A, Da Silva C, Denoeud F, Duplessis S, Ghignone S, Hilselberger B, Iotti M, Marçais B, Mello A, Miranda M, Pacioni G, Quesneville H, Riccioni C, Ruotolo R, Splivallo R, Stocchi V, Tisserant E, Viscomi AR, Zambonelli A, Zampieri E, Henrissat B, Lebrun MH, Paolocci F, Bonfante P, Ottonello S, Wincker P.

Nature 464 1033-1038 PMID:20348908
A new archaeal β-glycosidase from Sulfolobus solfataricus: Seeding a novel retaining β-glycan-specific glycoside hydrolase family along with the human non-lysosomal glucosylceramidase GBA2. (2010)

Cobucci-Ponzano B, Aurilia V, Riccio G, Henrissat B, Coutinho PM, Strazzulli A, Padula A, Corsaro MM, Pieretti G, Pocsfalvi G, Fiume I, Cannio R, Rossi M, Moracci M.

J Biol Chem 285 20691-20703 PMID:20427274
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. (2010)

Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, Dufresne M, Freitag M, Grabherr M, Henrissat B, Houterman PM, Kang S, Shim WB, Woloshuk C, Xie X, Xu JR, Antoniw J, Baker SE, Bluhm BH , Breakspear A, Brown DW, Butchko RA, Chapman S, Coulson R, Coutinho PM, Danchin EG, Diener A, Gale LR, Gardiner DM, Goff S, Hammond-Kosack KE, Hilburn K, Hua-Van A, Jonkers W, Kazan K, Kodira CD, Koehrsen M, Kumar L, Lee YH, Li L, Manners JM, Miranda-Saavedra D, Mukherjee M, Park G, Park J, Park SY, Proctor RH, Regev A, Ruiz-Roldan MC, Sain D, Sakthikumar S, Sykes S, Schwartz DC, Turgeon BG, Wapinski I, Yoder O, Young S, Zeng Q, Zhou S, Galagan J, Cuomo CA, Kistler HC, Rep M.

Nature 464 367-73 PMID:20237561
Modulation of cellulosome composition in Clostridium cellulolyticum : adaptation to the polysaccharide environment revealed by proteomic and carbohydrate-active enzyme analyses. (2010)

Blouzard JC, Coutinho PM, Fierobe HP, Henrissat B, Lignon S, Tardif C, Pages S, Philip PD.

Proteomics 10 541-554 PMID:20013800
A novel alpha-N-acetylgalactosaminidase family with an NAD+-dependent catalytic mechanism suitable for enzymatic removal of blood group A antigens. (2010)

Sulzenbacher G, Liu QP, Bennett EP, Levery SB, Bourne Y, Ponchel G, Clausen H, Henrissat B.

Biocatal Biotransfor 28 22-32 PMID:0

2009

Transcriptional profiling of cellulase and expansin-related genes in a hypercellulolytic Trichoderma reesei. (2009)

Verbeke J, Coutinho P, Mathis H, Quenot A, Record E, Asther M, Heiss-Blanquet S.

Biotechnol Lett 31 1399-1405 PMID:19479322
A Genomic View of Glycobiology (2009)

Henrissat B, Surolia A, Stanley P.

In: Varki A, Cummings RD, Esko JD, Freeze HH, Stanley P, Bertozzi CR, Hart GW, Etzler ME, editors. Essentials of Glycobiology. 2nd edition, Cold Spring Harbor Laboratory Press. Chapter 7 89-99 PMID:20301243
Carbohydrate-active enzymes database: principles and classification of glycosyltransferases. (2009)

Coutinho PM, Rancurel C, Stam M, Bernard T, Couto F, Danchin EGJ, Henrissat B .

In Bioinformatics for Glycobiology and Glycomics: An Introduction. von der Lieth, W., Luetteke, T. and Frank, M. eds., John Wiley & Sons, Ltd 89-118 PMID:0
Bacterial glycosidases for the enzymatic removal of blood group antigens (2009)

Sulzenbacher G, Liu QP, Bennett EP, Spence J, Nudelman E, Levery SB, Bourne Y, Olsson ML, Henrissat B Clausen H.

8th Carbohydrate Bioengineering Meeting Ischia, Italie, Mai 2009. PMID:0
Molecular basis for galactosylation of core fucose residues in invertebrates: Identification of Caenorhabditis elegans N-glycan core α-1,6-fucoside β-1,4-galactosyltransferase GALT-1 as a member of a novel glycosyltransferase family. (2009)

Titz A, Butschi A, Henrissat B, Fan YY, Hennet T, Razzazi-Fazeli E, Hengartner MO, Wilson IB, Kuenzler M, Aebi M.

J Biol Chem 284 36223-33 PMID:19858195
The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity. (2009)

Ventura M, Turroni F, Zomer A, Foroni E, Giubellini V, Bottacini F, Canchaya C, Claesson MJ, He F, Mantzourani M, Mulas L, Ferrarini A, Gao B, Delledonne M, Henrissat B, Coutinho P, Oggioni M, Gupta RS, Zhang Z, Beighton D, Fitzgerald GF, O'Toole PW, van Sinderen D.

PLoS Genet 5(12) e1000785 PMID:20041198
Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae revealed by genome sequence analysis. (2009)

McBride MJ, Xie G, Martens EC, Lapidus A, Henrissat B, Rhodes RG, Goltsman E, Wang W, Xu J, Hunnicutt DW, Staroscik AM, Hoover TR, Cheng YQ, Stein JL.

Appl Environ Microbiol 75 6864-6875 PMID:19717629
Analysis of the Structural and Functional Diversity of Plant Cell Wall Specific Family 6 Carbohydrate Binding Modules. (2009)

Abbott DW, Ficko-Blean E, van Bueren AL, Rogowski A, Cartmell A, Coutinho PM, Henrissat B, Gilbert HJ, Boraston AB.

Biochemistry 48 10395-10404 PMID:19788273
The genome of Nectria haematococca : contribution of supernumerary chromosomes to gene expansion. (2009)

Coleman JJ, Rounsley SD, Rodriguez-Carres M, Kuo A, Wasmann CC, Grimwood J, Schmutz J, Taga M, White GJ, Zhou S, Schwartz DC, Freitag M, Ma LJ, Danchin EG, Henrissat B, Coutinho PM, Nelson DR, Straney D, Napoli CA, Barker BM, Gribskov M, Rep M, Kroken S, Molnar I, Rensing C, Kennell JC, Zamora J, Farman ML, Selker EU, Salamov A, Shapiro H, Pangilinan J, Lindquist E, Lamers C, Grigoriev IV, Geiser DM, Covert SF, Temporini E, Vanetten HD.

PLoS Genet 5 e1000618 PMID:19714214
Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1. (2009)

Berg Miller ME, Antonopoulos DA, Rincon MT, Band M, Bari A, Akraiko T, Hernandez A, Thimmapuram J, Henrissat B, Coutinho PM, Borovok I, Jindou S, Lamed R, Flint HJ, Bayer EA, White BA.

PLoS One 4 e6650 PMID:19680555
Post-genomic insights into the plant polysaccharide degradation potential of Aspergillus nidulans and comparison to Aspergillus niger and Aspergillus oryzae (2009)

Coutinho PM, Andersen MR, Kolenova K, vanKuyk PA, Benoit I, Gruben BS, Trejo Aguilar B, Visser H, van Solingen P, Pakula T, Seiboth B, Battaglia E, Aguilar Osorio G, de Jong JF, Ohm RA, Aguilar M, Henrissat B, Nielsen J, Stalbrand H, de Vries RP.

Fungal Genet Biol 46 S161-S169 PMID:19618505
The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms). (2009)

Yang JC, Madupu R, Durkin AS, Ekborg NA, Pedamallu CS, Hostetler JB, Radune D, Toms BS, Henrissat B, Coutinho PM, Schwarz S, Field L, Trindade-Silva AE, Soares CA, Elshahawi S, Hanora A, Schmidt EW, Haygood MG, Posfai J, Benner J, Madinger C, Nove J, Anton B, Chaudhary K, Foster J, Holman A, Kumar S, Lessard PA, Luyten YA, Slatko B, Wood N, Wu B, Teplitski M, Mougous JD, Ward N, Eisen JA, Badger JH, Distel DL.

PLoS One 4 e6085 PMID:19568419
Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas (2009)

Worden AZ, Lee JH, Mock T, Rouze P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML, Derelle E, Everett MV, Foulon E, Grimwood J, Gundlach H, Henrissat B, Napoli C, McDonald SM, Parker MS, Rombauts S, Salamov A, Von Dassow P, Badger JH, Coutinho PM, Demir E, Dubchak I, Gentemann C, Eikrem W, Gready JE, John U, Lanier W, Lindquist EA, Lucas S, Mayer KFX, Moreau H, Not F, Otillar R, Panaud O, Pangilinan J, Paulsen I, Piegu B, Poliakov A, Robbens S, Schmutz J, Toulza E, Wyss T, Zelensky A, Zhou K, Armbrust EV, Bhattacharya D, Goodenough UW, Van de Peer Y, Grigoriev IV.

Science 324 268-272 PMID:19359590
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. (2009)

Mahowald MA, Rey FE, Seedorf H, Turnbaugh PJ, Fulton RS, Wollam A, Shah N, Wang C, Magrini V, Wilson RK, Cantarel BL, Coutinho PM, Henrissat B, Crock LW, Russell A, Verberkmoes NC, Hettich RL, Gordon JI.

Proc Natl Acad Sci U S A 106 5859-5864 PMID:19321416
The 2008 update of the Aspergillus nidulans genome annotation: a community effort (2009)

Wortman JR, Gilsenan JM, Joardar V, Deegan J, Clutterbuck J, Andersen MR, Archer D, Bencina M, Braus G, Coutinho P, von Dohren H, Doonan J, Driessen AJM, Durek P, Espeso E, Fekete E, Flipphi M, Garcia Estrada C, Geysens S, Goldman G, de Groot PWJ, Hansen K, Harris SD, Heinekamp T, Helmstaedt K, Henrissat B, Hofmann G, Homan T, Horio T, Horiuchi H, James S, Jones M, Karaffa L, Karanyi Z, Kato M, Keller N, Kelly DE, Kiel JAKW, Kim J-M, van der Klei IJ, Klis FM, Kovalchuk A, Krasevec N, Kubicek CP, Liu B, MacCabe A, Meyer V, Mirabito P, Miskei M, Mos M, Mullins J, Nelson DR, Nielsen J, Oakley BR, Osmani SA, Pakula T, Paszewski A, Paulsen I, Pilsyk S, Pocsi I, Punt PJ, Ram AFJ, Ren Q, Robellet X, Robson G, Seiboth B, van Solingen P, Specht T, Sun J, Taheri-Talesh N, Takeshita N, Ussery D, vanKuyk PA, Visser H, van de Vondervoort PJI, de Vries RP, Walton J, Xiang X, Xiong Y, Zeng AP, Brandt BW, Cornell MJ, van den Hondel CAMJJ, Visser J, Oliver SG, Turner G.

Fungal Genet Biol 46 S2-S13 PMID:19146970
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. (2009)

Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Wymelenberg AV, Gaskell J, Lindquist E, Sabat G, Bondurant SS, Larrondo LF, Canessa P, Vicuna R, Yadav J, Doddapaneni H, Subramanian V, Pisabarro AG, Lavin JL, Oguiza JA, Master E, Henrissat B, Coutinho PM, Harris P, Magnuson JK, Baker SE, Bruno K, Kenealy W, Hoegger PJ, Kues U, Ramaiya P, Lucas S, Salamov A, Shapiro H, Tu H, Chee CL, Misra M, Xie G, Teter S, Yaver D, James T, Mokrejs M, Pospisek M, Grigoriev IV, Brettin T, Rokhsar D, Berka R, Cullen D.

Proc Natl Acad Sci U S A 106 1954-1959 PMID:19193860
Three genomes from the phylum Acidobacteria provide insight into their lifestyles in soils. (2009)

Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J, Barabote RD, Bradley B, Brettin TS, Brinkac LM, Bruce D, Creasy T, Daugherty SC, Davidsen TM, Deboy RT, Detter JC, Dodson RJ, Durkin AS, Ganapathy A, Gwinn-Giglio M, Han CS, Khouri H, Kiss H, Kothari SP, Madupu R, Nelson K, Nelson WC, Paulsen I, Penn K, Ren Q, Rosovitz MJ, Selengut JD, Shrivastava S, Sullivan SA, Tapia R, Thompson LS, Watkins KL, Yang Q, Yu C, Zafar N, Zhou L, Kuske CR.

Appl Environ Microbiol 75 2046-2056 PMID:19201974
Tropheryma whipplei glycosylation in the pathophysiologic profile of Whipple's disease. (2009)

Bonhomme CJ, Renesto P, Desnues B, Ghigo E, Lepidi H, Fourquet P, Fenollar F, Henrissat B, Mege JL, Raoult D.

J Infect Dis 199 1043-1052 PMID:19222368
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases (2009)

Brulc JM, Antonopoulos DA, Berg Miller ME, Wilsona MK, Yannarell AC, Dinsdaled EA, Edwards RE, Frankh ED, Emersoni JB, Wacklini P, Coutinho PM, Henrissat B, Nelsoni KE, White BA.

Proc Natl Acad Sci U S A 106 1948-1953 PMID:19181843
A core gut microbiome in obese and lean twins. (2009)

Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI.

Nature 457 480-484 PMID:19043404
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics (2009)

Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B.

Nucleic Acids Res 37 D233-238 PMID:18838391

2008

Glycosyltransferases: Structures, Functions and Mechanisms (2008)

Lairson LL, Henrissat B, Davies GJ, Withers SG.

Annu Rev Biochem 77 521-555 PMID:18518825
The genome sequence of the model ascomycete fungus Podospora anserina. (2008)

Espagne E, Lespinet O, Malagnac F, Da Silva C, Jaillon O, Porcel BM, Couloux A, Aury JM, Segurens B, Poulain J, Anthouard V, Grossetete S, Khalili H, Coppin E, Dequard-Chablat M, Picard M, Contamine V, Arnaise S, Bourdais A, Berteaux-Lecellier V, Gautheret D, de Vries RP, Battaglia E, Coutinho PM, Danchin EG, Henrissat B, Khoury RE, Sainsard-Chanet A, Boivin A, Pinan-Lucarre B, Sellem CH, Debuchy R, Wincker P, Weissenbach J, Silar P.

Genome Biol 9 R77 PMID:18460219
Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 (2008)

Weiner RM, Larry E Taylor LE, Henrissat B, Hauser L, Land M, Coutinho PM, Rancurel C, Saunders EH , Longmire AG, Zhang H, Bayer EA, Gilbert HJ, Larimer F, Zhulin IB, Ekborg NA, Lamed R, Richardson PM, Borovok I, Hutcheson S.

PLoS Genet 4(5) e1000087 PMID:18516288
Biochemical and structural characterization of the intracellular mannanase AaManA of Alicyclobacillus acidocaldarius reveals a novel glycoside hydrolase family belonging to Clan GH-A. (2008)

Zhang Y, Ju J, Peng H, Gao F, Zhou C, Zeng Y, Xue Y, Li Y, Henrissat B, Gao GF, Ma Y.

J Biol Chem 283 31551-8 PMID:18755688
Divergence of catalytic mechanism within a glycosidase family provides insight into evolution of carbohydrate metabolism by human gut flora. (2008)

Gloster TM, Turkenburg JP, Potts JR, Henrissat B, Davies GJ.

Chem Biol 15 1058-1067 PMID:18848471
Glycosyltransferases, glycoside hydrolases: surprise, surprise! (2008)

Henrissat B, Sulzenbacher G, Bourne Y.

Curr Opin Struct Biol 18 527-533 PMID:18822375
The convergence of carbohydrate active gene repertoires in human gut microbes. (2008)

Lozupone CA, Hamady M, Cantarel BL, Coutinho PM, Henrissat B, Gordon JI, Knight R.

Proc Natl Acad Sci U S A 105(39) 15076-81 PMID:18806222
Insights into plant cell-wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus . (2008)

Deboy RT, Mongodin EF, Fouts DE, Tailford LE, Khouri H, Emerson JB, Mohamoud Y, Watkins K, Henrissat B, Gilbert HJ, Nelson KE.

J Bacteriol 190 5455-5463 PMID:18556790
Genome sequence of the metazoan plant-specific nematode Meloidogyne incognita (2008)

Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EGJ, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC, Caillaud MC, Coutinho PM, Dasilva C, De Luca F, Deau F, Esquibet M, Flutre T, Goldstone JV, Hamamouch N, Hewezi T, Jaillon O, Jubin C, Leonetti P, Magliano M, Maier TR, Markov GV, McVeigh P, Pesole G, Poulain J, Robinson-Rechavi M, Sallet E, Segurens B, Steinbach D, Tytgat T, Ugarte E, van Ghelder C, Veronico P, Baum TJ, Blaxter M, Bleve-Zacheo T, Davis EL, Ewbank JJ, Favery B, Grenier E, Henrissat B, Jones JT, Laudet V, Maule AG, Quesneville H, Rosso MN, Schiex T, Smant G, Weissenbach J, Wincker P.

Nat Biotechnol 26 909-915 PMID:18660804
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) (2008)

Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EGJ, Grigoriev IV, Harris P, Jackson M, Kubicek CP, Han CS, Ho I, Larrondo LF, Lopez de Leon A, Magnuson JK, Merino S, Misra M, Nelson B, Putnam N, Robbertse B, Salamov AA, Schmoll M, Terry A, Thaye N, Westerholm-Parvinen A, Schoch CL, Yao J, Barbote R, Nelson MA, Detter C, Bruce D, Kuske CR, Xie G, Richardson P, Rokhsar DS, Lucas SM, Rubin EM, Dunn-Coleman N, Ward M, Brettin TS.

Nat Biotechnol 26 553-560 PMID:18454138
FOLy: an integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds (2008)

Levasseur A, Piumi F, Coutinho PM, Rancurel C, Asther M, Delattre M, Henrissat B, Pontarotti P, Asther M, Record E.

Fungal Genet Biol 45 638-45 PMID:18308593
Identification of a GH110 subfamily of alpha1,3-galactosidases: Novel enzymes for removal of the alpha3gal xenotransplantation antigen. (2008)

Liu QP, Yuan H, Bennett EP, Levery SB, Nudelman E, Spence J, Pietz G, Saunders K, White T, Olsson ML, Henrissat B, Sulzenbacher G, Clausen H..

J Biol Chem 283 8545-54 PMID:18227066
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis (2008)

Martin F, Aerts A, Ahren D, Brun A, Danchin EGJ, Duchaussoy F, Gibon J, Kohler A, Lindquist E, Pereda V, Salamov A, Shapiro HJ, Wuyts J, Blaudez D, Buee M, Brokstein P, Canback B, Cohen D, Courty PE, Coutinho PM, Delaruelle C, Detter JC, Deveau A, DiFazio S, Duplessis S, Fraissinet-Tachet L, Lucic E, Frey-Klett P, Fourrey C, Feussner I, Gay G, Grimwood J, Hoegger PJ, Jain P, Kilaru S, Labbe J, Lin YC, Legue V, Le Tacon F, Marmeisse R, Melayah D, Montanini B, Muratet M, Nehls U, Niculita-Hirzel H, Oudot-Le Secq MP, Peter M, Quesneville H, Rajashekar B, Reich M, Rouhier N, Schmutz J, Yin T, Chalot M, Henrissat B, Kues U, Lucas S, Van de Peer Y, Podila GK, Polle A, Pukkila PJ, Richardson PM, Rouze P, Sanders IR, Stajich JE, Tunlid A, Tuskan G, Grigoriev IV.

Nature 452 88-92 PMID:18322534

2007

A novel a-N-acetylgalactosaminidase family with a NAD+ dependent catalytic mechanism suitable for enzymatic removal of blood group A antigens (2007)

Sulzenbacher G, Liu QP, Bennett EP, Spence J, Nudelman E, Levery SB, Bourne Y, Olsson ML, Henrissat B, Clausen H.

24th European Crystallography Meeting, Marrakesh Marrakesh, Maroc, Aout 2007 PMID:0
A novel a-N-acetylgalactosaminidase family with a NAD+ dependent catalytic mechanism suitable for enzymatic removal of blood group A antigens (2007)

Sulzenbacher G, Liu QP, Bennett EP, Spence J, Nudelman E, Levery SB, Bourne Y, Olsson ML, Henrissat B Clausen H.

GTBIO GTBIO, Lille, Octobre 2007 PMID:0
Membrane association is a determinant for substrate recognition by PMT4 protein O-mannosyltransferases (2007)

Hutzler J, Schmid M, Bernard T, Henrissat B, Strahl S.

Proc Natl Acad Sci U S A 104 7827-7832 PMID:17470820
Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut (2007)

Samuel BS, Hansen EE, Manchester JK, Coutinho PM, Henrissat B, Fulton R, Latreille P, Kim K, Wilson RK, Gordon JI.

Proc Natl Acad Sci U S A 104 10643-10648 PMID:17563350
[Glycosidases for the production of universal blood.] (2007)

Sulzenbacher G, Bourne Y, Henrissat B.

Med Sci (Paris) 23 703-5 PMID:17875286
Structural Organization and a Standardized Nomenclature for Plant Endo-1,4-beta-Glucanases (Cellulases) of Glycosyl Hydrolase Family 9. (2007)

Urbanowicz BR, Bennett AB, Del Campillo E, Catala C, Hayashi T, Henrissat B, Hofte H, McQueen-Mason SJ, Patterson SE, Shoseyov O, Teeri TT, Rose JK.

Plant Physiol 144 1693-6 PMID:17687051
Evolution of Symbiotic Bacteria in the Distal Human Intestine. (2007)

Xu J, Mahowald MA, Ley RE, Lozupone CA, Hamady M, Martens EC, Henrissat B, Coutinho PM, Minx P, Latreille P, Cordum H, Van Brunt A, Kim K, Fulton RS, Fulton LA, Clifton SW, Wilson RK, Knight RD, Gordon JI.

PLoS Biol 5 e156 PMID:17579514
Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii. (2007)

Xie G, Bruce DC, Challacombe JF, Chertkov O, Detter JC, Gilna P, Han CS, Lucas S, Misra M, Myers GL, Richardson P, Tapia R, Thayer N, Thompson LS, Brettin TS, Henrissat B, Wilson DB, McBride MJ.

Appl Environ Microbiol 73 3536-3546 PMID:17400776
Bacterial glycosidases for the production of universal red blood cells (2007)

Liu QP, Sulzenbacher G, Yuan H, Bennett EP, Pietz G, Saunders K, Spence J, Nudelman E, Levery SB, White T, Neveu JM, Lane WS, Bourne Y, Olsson ML, Henrissat B, Clausen H.

Nat Biotechnol 25 454-464 PMID:17401360
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88 (2007)

Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, de Vries RP, Albang R, Albermann K, Andersen MR, Bendtsen JD, Benen JAE, van den Berg M, Breestraat S, Caddick, MX, Contreras R, Cornell M, Coutinho PM, Danchin EGJ, Debets AJM, Dekker P, van Dijck PWM, van Dijk A, Dijkhuizen L, Driessen AJM, dEnfert C, Geysens S, Goosen C, Groot GSP, de Groot PWJ, Guillemette T, Henrissat B, Herweijer M, van den Hombergh JPTW, van den Hondel CAMJJ, van der Heijden RTJM, van der Kaaij RM, Klis FM, Kools HJ, Kubicek CP, van Kuyk PA, Lauber J, Lu X, van der Maarel MJEC, Meulenberg R, Menke H, Mortimer AM, Nielsen J, Oliver SG, Olsthoorn M, Pal K, van Peij NNME, Ram AFJ, Rinas U, Roubos JA, Sagt CMJ, Schmoll M, Sun J, Ussery D, Varga J, Vervecken W, van de Vondervoort PJI, Wedler H, Wosten HAB, Zeng A-P, van Ooyen AJJ, Visser J, Stam H .

Nat Biotechnol 25 221-231 PMID:17259976

2006

Des champignons qui carburent : de l'etude du genome a la production industrielle (2006)

Asther M, Record E, Gimbert I, Sigoillot JC, Levasseur A, Danchin EGJ, Coutinho PM, Monot F.

Biofutur 269 28-32 PMID:0
Dividing the large glycoside hydrolase family 13 into subfamilies: towards improved functional annotations of α-amylase-related proteins (2006)

Stam MR, Danchin EGJ, Rancurel C, Coutinho PM, Henrissat B.

Protein Eng Des Sel 19 555-562 PMID:17085431
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). (2006)

Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D.

Science 313 1596-1604 PMID:16973872
A complete cellulase system in the marine bacterium Saccharophagus degradans strain 2-40 (2006)

Taylor LE II, Henrissat B, Coutinho PM, Ekborg NA, Howard MB, Hutcheson SW, Weiner RM.

J Bacteriol 188 3849-3861 PMID:16707677
Genomic and proteomic analysis of the agarolytic system expressed by Saccharophagus degradans 2-40 (2006)

Ekborg NA, Longmire AG, Taylor LE, Henrissat B, Weiner RM, Hutcheson SW.

Appl Environ Microbiol 72 3396-3405 PMID:16672483
Crystal structure of inactivated invertase from Thermotoga maritima in complex with the trisaccharide substrate raffinose. (2006)

Alberto F, Jordi E, Henrissat B, Czjzek M.

Biochem J 395 457-462 PMID:16411890
Poplar Carbohydrate-Active Enzymes (CAZymes). Gene identification and expression analyses (2006)

Geisler-Lee J, Geisler M, Coutinho PM, Segerman B, Nishikubo N, Takahashi J, Aspeborg H, Djerbi S, Masters E, Andersson-Gunneras S, Sundberg B, Karpinski S, Teeri TT, Kleczkowski LA, Henrissat B, Mellerowicz EJ.

Plant Physiol 140 946-962 PMID:16415215
Making cellulose enriched tension wood in poplar: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis (2006)

Andersson-Gunneras S, Mellerowicz EJ, Love J, Segerman B, Ohmiya Y, Coutinho PM, Nilsson P, Henrissat B, Moritz T, Sundberg B.

Plant J 45 144-165 PMID:16367961

2005

Mucolipidosis II is caused by mutations in MGC4170 gene encoding the alpha/beta GlcNac-1-phosphotransferase (2005)

Tiede S, Storch S, Lubke T, Henrissat B, Bargal R, Raas-Rothchild A, Braulke T.

Nat Med 11 1109-1112 PMID:16200072
Evolutionary and mechanistic relationships between glycosidases acting on alpha- and beta-bonds (2005)

Stam M, Blanc E, Coutinho PM, Henrissat B.

Carbohydr Res 340 2728-2734 PMID:16226731
Recent structural insights into the expanding world of carbohydrate-active enzymes (2005)

Davies GJ, Gloster TM, Henrissat B.

Curr Op Struct Biol 15 637-645 PMID:16263268
Enzyme-substrate complex structures of a GH39 beta-xylosidase from Geobacillus stearothermophilus (2005)

Czjzek M, Bravman T, Ben David A, Shoham G, Henrissat B, Shoham Y.

J Mol Biol 353 838-846 PMID:16212978
Protein disorder: conformational distribution of the flexible linker in a chimeric double cellulase. (2005)

von Ossowski I, Eaton JT, Czjzek M, Perkins SJ, Frandsen TP, Schulein M, Panine P, Henrissat B, Receveur-Brechot V.

Biophys J 88 2823-2832 PMID:15653742
Emergence of a subfamily of xylanase inhibitors within glycoside hydrolase family 18 (2005)

Durand A, Hughes R, Roussel A, Flatman R, Henrissat B, Juge N.

FEBS J 272 1745-1755 PMID:15794761
Glycosyltransferase genomics in Dictyostelium discoideum (2005)

West CM, van der Wel H, Coutinho PM, Henrissat B.

In Dictyostelium Genomics. W.F. Loomis & A. Kuspa, eds., Horizon Scientific Press 235-264 PMID:0
Mycobacterium tuberculosis strains possess functional cellulases. (2005)

Varrot A, Leydier S, Pell G, Macdonald JA, Stick RV, Henrissat B, Gilbert HJ, Davies GJ.

J Biol Chem 27 20181-20184 PMID:15824123
Carbohydrate-Active Enzymes Involved in the Secondary Cell Wall Biogenesis in Hybrid Aspen. (2005)

Aspeborg H, Schrader J, Coutinho PM, Stam M, Kallas A, Djerbi S, Nilsson P, Denman S, Amini B, Sterky F, Master E, Sandberg G, Mellerowicz E, Sundberg B, Henrissat B, Teeri TT.

Plant Physiol 137 983-997 PMID:15734915
VaZyMolO: a tool to define and classify modularity in viral proteins. (2005)

Ferron F, Rancurel C, Longhi S, Cambillau C, Henrissat B, Canard B.

J Gen Virol 86 743-749 PMID:15722535

2004

The family 6 carbohydrate-binding module CmCBM6-2 contains two ligand-binding sites with distinct specificities (2004)

Henshaw J, Bolam DN, Pires VM, Czjzek M, Henrissat B, Ferreira LM, Fontes CM, Gilbert HJ.

J Biol Chem 279 21552-21559 PMID:15004011
Structural determinants of substrate specificity in family 1 beta -glucosidases: novel insights from the crystal structure of sorghum dhurrinase-1, a plant beta -glucosidase with strict specificity, in complex with its natural substrate (2004)

Verdoucq L, Moriniere J, Bevan D R, Esen A, Vasella A, Henrissat B, Czjzek M.

J Biol Chem 279 31796-31803 PMID:15148317
Crystallization and preliminary X-ray analysis of a thermostable family 52 beta-D-xylosidase from Geobacillus stearothermophilus T-6 (2004)

Czjzek M, Bravman T, Henrissat B, Shoham Y.

Acta Crystallogr D Biol Crystallogr 60 1461-1463 PMID:15272177
X4 modules represent a new family of carbohydrate-binding modules that display novel properties (2004)

Bolam DN, Xie H, Pell G, Hogg D, Galbraith G, Henrissat B, Gilbert H .

J Biol Chem 279 22953-22963 PMID:15004012
The crystal structure of the family 6 carbohydrate-binding module from Cellvibrio mixtus lichenase 5A in complex with oligosaccharides reveals two distinct binding sites with different ligand specificities (2004)

Pires VM, Henshaw J, Prates JA, Bolam D, Ferreira LM, Fontes CM, Henrissat B, Planas A, Gilbert HJ, Czjzek M.

J Biol Chem 279 21560-21568 PMID:15010454
Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78 (2004)

Martinez D, Larrondo LF, Putnam N, Sollewijn-Gelpke MD, Huang K, Chapman J, Helfenbein K, Ramaiya P, Detter JC, Larimer F, Coutinho PM, Henrissat B, Berka R, Cullen D, Rokhsar D.

Nat Biotechnol 22 695-700 PMID:15122302
The three-dimensional structure of invertase (beta-fructosidase) from Thermotoga maritima reveals a bimodular arrangement and an evolutionary relationship between retaining and inverting glycosidases (2004)

Alberto F, Bignon C, Sulzenbacher G, Henrissat B, Czjzek M.

J Biol Chem 279 18903-18910 PMID:14973124
Parallel substrate binding sites in a beta-agarase suggest a novel mode of action on double helical agarose. (2004)

Allouch J, Helbert W, Henrissat B, Czjzek M.

Structure 12 623-632 PMID:15062085
Crystal structure of Thermotoga maritima a-L-fucosidase: Insights into catalytic mechanism and the molecular basis for fucosidosis (2004)

Sulzenbacher G, Bignon C, Nishimura T, Tarling CA, Withers SG, Henrissat B, Bourne Y.

J Biol Chem 279 13119-13128 PMID:14715651
Klotho is a novel beta-glucuronidase capable of hydrolyzing steroid beta-glucuronides (2004)

Tohyama O, Imura A, Iwano A, Freund JN, Henrissat B, Fujimori T, Nabeshima Y.

J Biol Chem 279 9777-9784 PMID:14701853
Crystallization and preliminary X-ray analysis of family 39 beta-D-xylosidase from Geobacillus stearothermophilus T-6 (2004)

Czjzek M, Bravman T, Henrissat B, Shoham Y.

Acta Crystallogr D Biol Crystallogr 60 583-585 PMID:14993701
Plant proteinaceous inhibitors of carbohydrate-active enzymes. (2004)

Juge N, Svensson B, Henrissat B, Williamson G.

Biochim Biophys Acta 1696 141 PMID:14871654

2003

The families of carbohydrate-active enzymes in the genomic era (2003)

Coutinho PM, Deleury E, Henrissat B.

J Appl Glycosci 50 241-244 PMID:0
Why so many carbohydrate-active enzymes related genes in plants ? (2003)

Coutinho PM, Stam M, Blanc E, Henrissat B.

Trends Plant Sci 8 563-565 PMID:14659702
Identification of the catalytic nucleophile of the family 29 alpha -L-fucosidase from Thermotoga maritima through trapping of a covalent glycosyl-enzyme intermediate and mutagenesis. (2003)

Tarling CA, He S, Sulzenbacher G, Bignon C, Bourne Y, Henrissat B, Withers SG.

J Biol Chem 278 47394-47399 PMID:12975375
Sequence families and modular organisation of carbohydrate-active enzymes (2003)

Henrissat B, Coutinho PM, Deleury E, Davies GJ.

In Enzyme functionality : Design, Engineering and Screening. Svendsen A, ed., Marcel Dekker, New York 15-34 PMID:0
The three-dimensional structures of two beta-agarases. (2003)

Allouch J, Jam M, Helbert W, Barbeyron T, Kloareg B, Henrissat B, Czjzek M.

J Biol Chem 278 47171-47180 PMID:12970344
Detailed kinetic analysis of a family 52 glycoside hydrolase: a beta-xylosidase from Geobacillus stearothermophilus . (2003)

Bravman T, Zolotnitsky G, Belakhov V, Shoham G, Henrissat B, Baasov T, Shoham Y.

Biochemistry 42 10528-10536 PMID:12950180
Identification of the catalytic residues in family 52 glycoside hydrolase, a beta-xylosidase from Geobacillus stearothermophilus T-6. (2003)

Bravman T, Belakhov V, Solomon D, Shoham G, Henrissat B, Baasov T, Shoham Y.

J Biol Chem 278 26742-26749 PMID:12738774
Quantitative trait loci and comparative genomics of cereal cell wall composition (2003)

Hazen SP, Hawley RM, Davis GL, Henrissat B, Walton JD.

Plant Physiol 132 263-271 PMID:12746531
An evolving hierarchical family classification for glycosyltransferases (2003)

Coutinho PM, Deleury E, Davies GJ, Henrissat B.

J Mol Biol 328 307-317 PMID:12691742

2002

Dimensions, shape and conformational flexibility of a two domain fungal cellulase in solution probed by small angle X-ray scattering (2002)

Receveur V, Czjzek M, Schulein M, Panine P, Henrissat B.

J Biol Chem 277 40887-40892 PMID:12186865
Aspergillus aculeatus beta-1,4-galactanase: substrate recognition and relations to other glycoside hydrolases in clan GH-A (2002)

Ryttersgaard C, Lo Leggio L, Coutinho PM, Henrissat B, Larsen S.

Biochemistry 41 15135 -15143 PMID:12484750
Structural enzymology of carbohydrate-active enzymes: implications of the post-genomic era (2002)

Davies GJ, Henrissat B.

Biochem Soc Trans 30 291-297 PMID:12023867
Characterization of some mesogenic alkyl 1-thioglycosides (2002)

Henrissat B, Hamer GK, Taylor MG, Marchessault RH.

Can J Chem 80 1162-1165 PMID:0
Molecular characterization of a cell wall-associated beta(1-3)endoglucanase of Aspergillus fumigatus (2002)

Mouyna I, Sarfati J, Recco P, Fontaine T, Henrissat B, Latge JP.

Med Mycol 40 455-464 PMID:0
Assignment of the 1H, 13C, and 15N resonances of the 22.5 kDa CBM28 module of the cellulase Cel5I of Clostridium cellulolyticum. (2002)

Mosbah A, Tardif C, Bornet O, Valette O, Henrissat B, Darbon H.

J Biomol NMR 23 157-158 PMID:12153043
Glycogen metabolism loss : a common marker of parasitic behaviour in bacteria ? (2002)

Henrissat B, Deleury E, Coutinho PM.

Trends Genet 18 437-440 PMID:12175798
Viral RNA-polymerases - a predicted 2'-O-ribose methyltransferase domain shared by all Mononegavirales (2002)

Ferron F, Longhi S, Henrissat B, Canard B.

Trends Biochem Sci 27 222-224 PMID:12076527
Carbohydrate-active enzymes in completely sequenced genomes (2002)

Henrissat B, Coutinho PM.

In Carbohydrate Bioengineering : Interdisciplinary Approaches. Teeri TT , Svensson B, Gilbert HJ, Feizi T, eds. The Royal Society of Chemistry, Cambridge 171-177 PMID:0

2001

Glycoside hydrolases and glycosyltransferases: families and functional modules (2001)

Bourne Y, Henrissat B.

Curr Opin Struct Biol 11 593-600 PMID:11785761
The kappa-carrageenase of Pseudoalteromonas carrageenovora features a tunnel-shaped active site : a novel insight in the evolution of clan-B glycoside hydrolases (2001)

Michel G, Chantalat L, Duee E, Barbeyron T, Henrissat B, Kloareg B, Dideberg O.

Structure 9 513-525 PMID:11435116
The celA gene, encoding a glycosyl hydrolase family 3 beta-glucosidase in Azospirillum irakense, is required for optimal growth on cellobiosides. (2001)

Faure D, Henrissat B, Ptacek D, Bekri MA, Vanderleyden J..

Appl Environ Microbiol 67 2380-2383 PMID:11319128
The enzymatic synthesis of glycosidic bonds: "Glycosynthases" and glycosyltransferases (2001)

Davies GJ, Charnock SJ, Henrissat B.

Trends Glycosci Glycotechnol 13 105-120 PMID:0
The iota-carrageenase of Alteromonas fortis: a beta-helix fold-containing enzyme for the degradation of a highly polyanionic polysaccharide (2001)

Michel G, Chantalat L, Fanchon E, Henrissat B, Kloareg B, Dideberg O.

J Biol Chem 276 40202-40209 PMID:11493601
The location of the ligand binding site of carbohydrate binding modules that have evolved from a common sequence is not conserved (2001)

Czjzek M, Bolam DN, Mosbah A, Allouch J, Fontes CMGA, Ferreira LMA, Bornet O, Zamboni V, Darbon H, Smith N, Black GW, Henrissat B, Gilbert HJ.

J Biol Chem 276 48580-48587 PMID:11673472
Optimized mixtures of recombinant Humicola insolens cellulases for the biodegradation of crystalline cellulose (2001)

Boisset C, Petrequin C, Henrissat B, Chanzy H, Schulein M.

Biotechnol Bioeng 72 339-345 PMID:11135204
Glycosidase active site mutations in human alpha-L-iduronidase (2001)

Brooks DA, Fabrega S, Hein LK, Parkinson EJ, Durand P, Yogalingam G, Matte U, Giugliani R, Dasvarma A, Eslahpazire J, Henrissat B, Mornon JP, Hopwood JJ, Lehn P.

Glycobiology 11 741-750 PMID:11555618
A census of carbohydrate-active enzymes in the genome of Arabidopsis thaliana (2001)

Henrissat B, Coutinho PM, Davies GJ.

Plant Mol Biol 47 55-72 PMID:11554480
Streptomyces matensis laminaripentaose hydrolase is an inverting b-1,3-glucanase (2001)

Nishimura T, Bignon C, Allouch J, Czjzek M, Darbon H, Watanabe T, Henrissat B.

FEBS Lett 499 187-90 PMID:11418137
Enzyme-catalyzed condensation reaction in a mammalian a-amylase. High-resolution structural analysis of an enzyme-inhibitor complex (2001)

Qian M, Nahoum V, Bonicel J, Bischoff H, Henrissat B, Payan F.

Biochemistry 40 7700-7709 PMID:11412124
Classification of glycoside hydrolases and glycosyltransferases from hyperthermophiles (2001)

Henrissat B, Coutinho PM.

Methods Enzymol 330 183-201 PMID:11210498
Crystal structure of monocotyledon (maize ZMGlu1) beta-glucosidase and a model of its complex with p-nitrophenyl-beta-D-thioglucoside (2001)

Czjzek M, Cicek M, Zamboni V, Burmeister WP, Bevan DR, Henrissat B, Esen A.

Biochem J 354 37-46 PMID:11171077
Three-dimensional structures of UDP-sugar glycosyltransferases illuminate the biosynthesis of plant polysaccharides (2001)

Charnock SJ, Henrissat B, Davies GJ.

Plant Physiol 125 527-531 PMID:11161010

2000

The mechanism of substrate (aglycone) specificity in beta-glucosidase is revealed by crystal structures of mutant maize beta-glucosidase-DIMBOA, -DIMBOAGlc, and -dhurrin complexes (2000)

Czjzek M, Cicek M, Zamboni V, Bevan DR, Henrissat B, Esen A.

Proc Natl Acad Sci U S A 97 13555-13560 PMID:11106394
Imaging the enzymatic digestion of bacterial cellulose ribbons reveals the endo character of cellobiohydrolase Cel6A from Humicola insolens and its mode of synergy with cellobiohydrolase Cel7A (2000)

Boisset C, Fraschini C, Schulein M, Henrissat B, Chanzy H.

Appl Environ Microbiol 66 1444-1452 PMID:10742225
Crystal structures of human pancreatic alpha-amylase in complex with carbohydrate and proteinaceous inhibitors (2000)

Nahoum V, Roux G, Anton V, Rouge P, Puigserver A, Bischoff H, Henrissat B, Payan F.

Biochem J 346 201-208 PMID:10657258
Iota-carrageenases constitute a novel family of glycoside hydrolases, unrelated to that of kappa-carrageenases (2000)

Barbeyron T, Michel G, Potin P, Henrissat B, Kloareg B.

J Biol Chem 275 35499-35505 PMID:10934194
Glycoside hydrolases and glycosyltransferases : families, modules and implications for genomics (2000)

Henrissat B, Davies GJ.

Plant Physiol 124 1515-1520 PMID:11115868
Crystal structure of a cohesin domain from Clostridium cellulolyticum : implications for the dockerin recognition (2000)

Spinelli S, Fierobe HP, Belaich A, Belaich JP, Henrissat B, Cambillau C.

J Mol Biol 304 189-200 PMID:11080455
Biochemical analysis of recombinant fungal mutanases - A new family of alpha-1,3-glucanases with novel carbohydrate-binding domains (2000)

Fuglsang CC, Berka RM, Wahleitner JA, Kaupinnen S, Shuster JR, Hansen MT, Dalboge H and Henrissat B.

J Biol Chem 275 2009-2018 PMID:10636904
Structural features of normal and mutant human lysosomal glycoside hydrolases deduced from bioinformatics analysis (2000)

Durand P, Fabrega S, Henrissat B, Mornon JP, Lehn P.

Hum Mol Genet 9 967-977 PMID:10767320
Identification of the catalytic residues of the first family of beta(1-3)glucanosyltransferases identified in fungi (2000)

Mounya I, Monod M, Fontaine T, Henrissat B, Latge JP.

Biochem J 347 741-747 PMID:10769178
Human glucocerebrosidase : heterologous expression of active site mutants in murine null cells (2000)

Fabrega S, Durand P, Codogno P, Bauvy C, Delomenie C, Henrissat B, Martin BM, McKinney C, Ginns EI, Mornon JP, Lehn P.

Glycobiology 10 1217-1224 PMID:11087714
Solution structure of the module X2_1 of unknown function of the cellulosomal scaffolding Protein CipC of Clostridum cellulolyticum (2000)

Mosbah A, Belaich A, Bornet O, Belaich JP, Henrissat B, Darbon H.

J Mol Biol 304 201-217 PMID:11080456
High resolution X-ray crystallography shows that ascorbate is a cofactor for myrosinase and substitutes for the function of the catalytic base. (2000)

Burmeister WP, Cottaz S, Rollin P, Vasella A, Henrissat B.

J Biol Chem 275 39385-39393 PMID:10978344

1999

Classification of chitinase modules (1999)

Henrissat B.

In Chitin and Chitinases. P. Jolles and R.A.A. Muzzarelli eds., Birkhauser, Basel 137-156 PMID:10906957
The modular structure of cellulases and other carbohydrate-active enzymes: an integrated database approach. (1999)

Coutinho PM, Henrissat B.

In Genetics, Biochemistry and Ecology of Cellulose Degradation. K. Ohmiya, K.Hayashi, K. Sakka, Y. Kobayashi, S. Karita & T. Kimura eds, Uni Publishers Co., Tokyo 15-23 PMID:0
Carbohydrate-active enzymes: an integrated database approach (1999)

Coutinho PM, Henrissat B.

In Recent Advances in Carbohydrate Bioengineering. H.J. Gilbert, G. Davies, B. Henrissat and B. Svensson eds., The Royal Society of Chemistry, Cambridge 3-12 PMID:0
Third chitinase Gene (chiC) of Serratia marcescens 2170 and relationship of its product to other bacterial chitinases. (1999)

Suzuki K, Taiyoji M, Sugawara N, Nikaidou N, Henrissat B and Watanabe T.

Biochem J 343 587-596 PMID:10527937
Digestion of crystalline cellulose substrates by the Clostridium thermocellum cellulosome: structural and morphological aspects (1999)

Boisset C, Chanzy H, Henrissat B, Lamed R, Soham Y, Bayer EA.

Biochem J 340 829-835 PMID:10359670
Growth of Azospirillum irakense KBC1 on the aryl beta-glucoside salicin requires either salA or salB . (1999)

Faure D, Desair J, Keijers V, Bekri MA, Proost P, Henrissat B, Vanderleyden J.

J Bacteriol 181 3003-3009 PMID:10321999
Localization of synthesis of b-1,6 glucan in Saccharomyces cerevisiae. (1999)

Montijn RC, Vink E, Mueller WH, Verkleij AJ, Ven den Ende H, Henrissat B & Klis FM.

J Bacteriol 181 7414-7420 PMID:10601196
Life with no sugars ? (1999)

Coutinho PM, Henrissat B.

J Mol Microbiol Biotechnol 1 307-308 PMID:10943561
Dynamic light scattering evidence for a ligand-induced motion between the two domains of glucoamylase G1 of Aspergillus niger using heterobivalent substrate analogues (1999)

Payre N, Cottaz S, Boisset C, Borsali R, Svensson B, Henrissat B, Driguez H.

Angew Chem Int Ed 38 974-977 PMID:0
Cellulosome-like sequences in Archaeoglobus fulgidus: An enigmatic vestige of cohesin and dockerin domains (1999)

Bayer EA, Coutinho PM & Henrissat B.

FEBS Lett 463 277-280 PMID:10606737

1998

A b(1,3)glucanosyltransferase isolated from the cell wall of Aspergillus fumigatus is an homolog of the yeast Bgl2p. (1998)

Mounya I, Hartland RP, Fontaine T, Diaquin M, Simenel C, Delepierre M, Henrissat B & Latge JP..

Microbiology 144 3171-3180 PMID:9846753
The gene glvA of Bacillus subtilis 168 encodes a metal-requiring, NAD(H)-dependent 6-phospho-a-glucosidase. Assignment to family 4 of the glycosylhydrolase superfamily (1998)

Thompson J, Pikis A, Ruvinov SB, Henrissat B, Yamamoto H, Sekiguchi J.

J Biol Chem 273 27347-27356 PMID:9765262
Enzymatic cellulose degradation. (1998)

Henrissat B.

Cellulose Commun 5 84-90 PMID:0