Research group: Glycogenomics

Facility : The CAZy bioinformatics

Publications

2022

2022
Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides

Lucelia Cabral, Gabriela Persinoti, Douglas Paixão, Marcele Martins, Mariana Morais, Mariana Chinaglia, Mariane Domingues, Mauricio Sforca, Renan Pirolla, Wesley Generoso, Clelton Santos, Lucas Maciel, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Mario Murakami

Nature Communications 13:629 (2022)10.1038/s41467-022-28310-y

2022
Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota

Matthew Ostrowski, Sabina Leanti La Rosa, Benoit Kunath, Andrew Robertson, Gabriel Pereira, Live Hagen, Neha Varghese, Ling Qiu, Tianming yao, Gabrielle Flint, James Li, Sean Mcdonald, Duna Buttner, Nicholas Pudlo, Matthew Schnizlein, Vincent young, Harry Brumer, Thomas Schmidt, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Bruce Hamaker, Emiley Eloe-Fadrosh, Ashootosh Tripathi, Phillip Pope, Eric Martens

Nature Microbiology 7:556-569 (2022)10.1038/s41564-022-01093-0

2022
The carbohydrate-active enzyme database: functions and literature

Elodie Drula, Marie-Line Garron, Suzan Dogan, Vincent Lombard, Bernard Henrissat, Nicolas Terrapon

Nucleic Acids Research 50:D571-D577 (2022)10.1093/nar/gkab1045

2021

2021
Discovery of fungal oligosaccharide-oxidising flavo-enzymes with previously unknown substrates, redox-activity profiles and interplay with LPMOs

Majid Haddad Momeni, Folmer Fredslund, Bastien Bissaro, Olanrewaju Raji, Thu Vuong, Sebastian Meier, Tine Sofie Nielsen, Vincent Lombard, Bruno Guigliarelli, Frédéric Biaso, Mireille Haon, Sacha Grisel, Bernard Henrissat, Ditte Hededam Welner, Emma Master, Jean-Guy Berrin, Maher Abou Hachem

Nature Communications 12 (2021)10.1038/s41467-021-22372-0

2021
Larvae of longhorned beetles (Coleoptera; Cerambycidae) have evolved a diverse and phylogenetically conserved array of plant cell wall degrading enzymes

Na Ra Shin, Seunggwan Shin, yu Okamura, Roy Kirsch, Vincent Lombard, Petr Svacha, Olivier Denux, Sylvie Augustin, Bernard Henrissat, Duane Mckenna, yannick Pauchet

Systematic Entomology 46:784-797 (2021)10.1111/syen.12488

2021
Evaluating microbiome-directed fibre snacks in gnotobiotic mice and humans

Omar Delannoy-Bruno, Chandani Desai, Arjun Raman, Robert Chen, Matthew Hibberd, Jiye Cheng, Nathan Han, Juan Castillo, Garret Couture, Carlito Lebrilla, Ruteja Barve, Vincent Lombard, Bernard Henrissat, Semen Leyn, Dmitry Rodionov, Andrei Osterman, David Hayashi, Alexandra Meynier, Sophie Vinoy, Kyleigh Kirbach, Tara Wilmot, Andrew Heath, Samuel Klein, Michael Barratt, Jeffrey Gordon

Nature 595:91-95 (2021)10.1038/s41586-021-03671-4

2021
Gut microbiome contributions to altered metabolism in a pig model of undernutrition

Hao-Wei Chang, Nathan Mcnulty, Matthew Hibberd, David O'Donnell, Jiye Cheng, Vincent Lombard, Bernard Henrissat, Olga Ilkayeva, Michael Muehlbauer, Christopher Newgard, Michael Barratt, Xi Lin, Jack Odle, Jeffrey Gordon, David O’donnell

Proceedings of the National Academy of Sciences of the United States of America 118:e2024446118 (2021)10.1073/pnas.2024446118

2021
Characterization of three bacterial glycoside hydrolase family 9 endoglucanases with different modular architectures isolated from a compost metagenome

Laure Aymé, Agnès Hébert, Bernard Henrissat, Vincent Lombard, Nathalie Franche, Stéphanie Perret, Etienne Jourdier, Senta Heiss-Blanquet

Biochimica et Biophysica Acta (BBA) - General Subjects 1865:129848 (2021)10.1016/j.bbagen.2021.129848

2021
Strain-level functional variation in the human gut microbiota based on bacterial binding to artificial food particles

Michael Patnode, Janaki Guruge, Juan Castillo, Garret Couture, Vincent Lombard, Nicolas Terrapon, Bernard Henrissat, Carlito Lebrilla, Jeffrey Gordon

Cell Host & Microbe 29:664-673.e5 (2021)10.1016/j.chom.2021.01.007

2021
Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber

Live Hagen, Charles Brooke, Claire Shaw, Angela Norbeck, Hailan Piao, Magnus Ø. Arntzen, Heather E. Olson, Alex Copeland, Nancy Isern, Anil Shukla, Simon Roux, Vincent Lombard, Bernard Henrissat, Michelle O’malley, Igor Grigoriev, Susannah Tringe, Roderick Mackie, Ljiljana Pasa-Tolic, Phillip Pope, Matthias Hess

ISME Journal 15:421-434 (2021)10.1038/s41396-020-00769-x

2021
Bioinformatic Analysis of Lytic Polysaccharide Monooxygenases Reveals the Pan-Families Occurrence of Intrinsically Disordered C-Terminal Extensions

Ketty C Tamburrini, Nicolas Terrapon, Vincent Lombard, Bastien Bissaro, Sonia Longhi, Jean-Guy Berrin

Biomolecules 11:1632 (2021)10.3390/biom11111632

2020

2020
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

Shingo Miyauchi, Enikő Kiss, Alan Kuo, Elodie Drula, Annegret Kohler, Marisol Sánchez-García, Emmanuelle Morin, Bill Andreopoulos, Kerrie Barry, Gregory Bonito, Marc Buée, Akiko Carver, Cindy Chen, Nicolas Cichocki, Alicia Clum, David Culley, Pedro Crous, Laure Fauchery, Mariangela Girlanda, Richard Hayes, Zsófia Kéri, Kurt Labutti, Anna Lipzen, Vincent Lombard, Jon Magnuson, François Maillard, Claude C. Murat, Matt Nolan, Robin Ohm, Jasmyn Pangilinan, Maíra de Freitas Pereira, Silvia Perotto, Martina Peter, Stephanie Pfister, Robert Riley, yaron Sitrit, J. Benjamin Stielow, Gergely Szöllősi, Lucia Žifčáková, Martina Štursová, Joseph Spatafora, Leho Tedersoo, Lu-Min Vaario, Akiyoshi yamada, Mi yan, Pengfei Wang, Jianping Xu, Tom Bruns, Petr Baldrian, Rytas Vilgalys, Christophe Dunand, Bernard Henrissat, Igor Grigoriev, David Hibbett, László Nagy, Francis M. Martin

Nature Communications 11 (2020)10.1038/s41467-020-18795-w

2020
Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut

Leszek Michalak, John Christian Gaby, Leidy Lagos, Sabina Leanti La Rosa, Torgeir Hvidsten, Catherine Tétard-Jones, William G T Willats, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Johannes Dröge, Magnus Øverlie Arntzen, Live Heldal Hagen, Margareth Øverland, Phillip Pope, Bjørge Westereng

Nature Communications 11 (2020)10.1038/s41467-020-19585-0

2020
α-Galactosidase and Sucrose-Kinase Relationships in a Bi-functional AgaSK Enzyme Produced by the Human Gut Symbiont Ruminococcus gnavus E1

Mickael Lafond, Alexandra Tauzin, Laetitia Bruel, Elisabeth Laville, Vincent Lombard, Jérémy Esque, Isabelle André, Nicolas Vidal, Frédérique Pompeo, Nathalie Quinson, Josette Perrier, Michel Fons, Gabrielle Potocki-Veronese, Thierry Giardina

Frontiers in Microbiology 11 (2020)10.3389/fmicb.2020.579521

2020
Densité de nids de Myrmica en tourbière : exemple de la tourbière de Jouvion (Puy-de-Dôme)

Luc Belenguier, Marine Kreder², Vincent Lombard, Mathilde Poussin, Christophe Galkovsky

BIOM - Revue scientifique pour la biodiversité du Massif central 1:35-48 (2020)10.18145/biom.v1i1.255

2020
Discovery of hyperstable carbohydrate‐active enzymes through metagenomics of extreme environments

Andrea Strazzulli, Beatrice Cobucci‐ponzano, Roberta Iacono, Rosa Giglio, Luisa Maurelli, Nicola Curci, Corinna Schiano‐di‐cola, Annalisa Santangelo, Patrizia Contursi, Vincent Lombard, Bernard Henrissat, Federico M Lauro, Carlos M.G.A. Fontes, Marco Moracci

FEBS Journal 287:1116-1137 (2020)10.1111/febs.15080

2020
Analysis of the diversity of the glycoside hydrolase family 130 in mammal gut microbiomes reveals a novel mannoside-phosphorylase function

Ao Li, Elisabeth Laville, Laurence Tarquis, Vincent Lombard, David Ropartz, Nicolas Terrapon, Bernard Henrissat, David Guieysse, Jeremy Esque, Julien Durand, Diego Morgavi, Gabrielle Potocki-Veronese

Microbial Genomics 6:1-14 (2020)10.1099/mgen.0.000404

2020
Investigating host-microbiome interactions by droplet based microfluidics

Alexandra S Tauzin, Mariana Rangel Pereira, Liisa D van Vliet, Pierre-yves Colin, Elisabeth Laville, Jeremy Esque, Sandrine Laguerre, Bernard Henrissat, Nicolas Terrapon, Vincent Lombard, Marion Leclerc, Joël Doré, Florian Hollfelder, Gabrielle Potocki-Veronese

Microbiome 8 (2020)10.1186/s40168-020-00911-z

2020
A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

Junhua Li, Huanzi Zhong, yuliaxis y. Ramayo-Caldas, Nicolas Terrapon, Vincent Lombard, Gabrielle Potocki-Veronese, Jordi Estellé, Milka Popova, Ziyi yang, Hui Zhang, Fang Li, Shanmei Tang, Fangming yang, Weineng Chen, Bing Chen, Jiyang Li, Jing Guo, Cécile Martin, Emmanuelle Maguin, Xun Xu, Huanming yang, Jian Wang, Lise Madsen, Karsten Kristiansen, Bernard Henrissat, Stanislav S. Ehrlich, Diego Morgavi

GigaScience 9:1-15 (2020)10.1093/gigascience/giaa057

2019

2019
Trichoderma reesei Dehydrogenase, a Pyrroloquinoline Quinone-Dependent Member of Auxiliary Activity Family 12 of the Carbohydrate-Active Enzymes Database: Functional and Structural Characterization

Annick Turbé-Doan, Eric Record, Vincent Lombard, Rajender Kumar, Anthony Levasseur, Bernard Henrissat, Marie-Line Garron

Applied and Environmental Microbiology 85:15 p. (2019)10.1128/AEM.00964-19

2019
A metagenomics investigation of carbohydrate-active enzymes along the goat and camel intestinal tract

Saad Al-Masaudi, Abdessamad El Kaoutari, Elodie Drula, Elrashdy Redwan, Vincent Lombard, Bernard Henrissat

International Microbiology 22:429-435 (2019)10.1007/s10123-019-00068-2

2019
Subfamily delineation of the evolutionarily diverse Glycoside Hydrolase Family 16 (GH16) provides a roadmap for functional glycogenomics

Alexander Holm Viborg, Nicolas Terrapon, Vincent Lombard, Gurvan Michel, Mirjam Czjzek, Bernard Henrissat, Harry Brumer

Journal of Biological Chemistry (2019)10.1074/jbc.RA119.010619

2019
Bacteroidetes use thousands of enzyme combinations to break down glycans

Pascal Lapébie, Vincent Lombard, Elodie Drula, Nicolas Terrapon, Bernard Henrissat

Nature Communications 10:1 (2019)10.1038/s41467-019-10068-5

2019
Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space

William Helbert, Laurent Poulet, Sophie Drouillard, Sophie Mathieu, Mélanie Loiodice, Marie Couturier, Vincent Lombard, Nicolas Terrapon, Jeremy Turchetto, Vincent Vincentelli, Bernard Henrissat

Proceedings of the National Academy of Sciences of the United States of America 116:6063-6068 (2019)10.1073/pnas.1815791116

2019
A subfamily roadmap for functional glycogenomics of the evolutionarily diverse Glycoside Hydrolase Family 16 (GH16)

Alexander Holm Viborg, Nicolas Terrapon, Vincent Lombard, Gurvan Michel, Mirjam Czjzek, Bernard Henrissat, Harry Brumer

Journal of Biological Chemistry 294:15973-15986 (2019)10.1074/jbc.RA119.010619

2018

2018
Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times

Xiaoyu Liang, Jason Whitham, Evert Holwerda, Xiongjun Shao, Liang Tian, yu-Wei Wu, Vincent Lombard, Bernard Henrissat, Dawn Klingeman, Zamin yang, Mircea Podar, Tom Richard, James Elkins, Steven S Brown, Lee Lynd

Biotechnology for Biofuels 11:243 (2018)10.1186/s13068-018-1238-1

2018
A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)

Sean Ma, yolanda Chen, Martin Ma, Joshua Benoit, Anita Bhandari, Julia Bowsher, Kristian Brevik, Kaat Cappelle, Mei-Ju Li, Anna Childers, Christopher Li, Olivier Christiaens, Justin Ma, Elise Didion, Elena Elpidina, Patamarerk Engsontia, Markus Ma, Inmaculada García-Robles, Richard Gibbs, Chandan Goswami, Alessandro Grapputo, Kristina Gruden, Marcin Ma, Bernard Ma, Emily Jennings, Jeffery Jones, Megha Kalsi, Sher Afzal Khan, Abhishek Kumar, Fei Li, Vincent Ma, Xingzhou Ma, Alex Martynov, Nicholas Miller, Robert Mitchell, Monica Muñoz-Torres, Anna Muszewska, Brenda Oppert, Subba Reddy Palli, Kristen Panfilio, yannick Pauchet, Lindsey Perkin, Marko Petek, Monica Poelchau, Eric Record, Joseph Rinehart, Hugh Robertson, Andrew Rosendale, Victor Ruiz-Arroyo, Guy Smagghe, Zsofia Szendrei, Gregg W.C Thomas, Alex Torson, Iris Vargas Jentzsch, Matthew Weirauch, Ashley yates, George yocum, June-Sun yoon, Stephen Richards, Sean Schoville, Martin Andersson, Mei-Ju Chen, Christopher Childers, Justin Clements, Markus Friedrich, Marcin Grynberg, Bernard Henrissat, Vincent Lombard, Alexander Ma, Lindsey Li, Marko Ma, Robert Robertson, Gregg W.C. Thomas, Matthew Ma, Richard Richards

Scientific Reports 8:1931 (2018)10.1038/s41598-018-20154-1

2018
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

yoann Seeleuthner, Samuel Mondy, Vincent Lombard, Quentin Carradec, Eric Pelletier, Marc Wessner, Jade Leconte, Jean-François Mangot, Julie Poulain, Karine Labadie, Ramiro Logares, Shinichi Sunagawa, Véronique de Berardinis, Marcel Salanoubat, Céline Dimier, Stefanie Kandels-Lewis, Marc Picheral, Sarah Searson, Stéphane Pesant, Nicole Poulton, Ramunas Stepanauskas, Peer Bork, Chris Bowler, Pascal Hingamp, Matthew B. Sullivan, Daniele Iudicone, Ramon Massana, Jean-Marc Aury, Bernard Henrissat, Eric Karsenti, Olivier Jaillon, Mike Sieracki, Colomban de Vargas, Patrick Wincker, Silvia G. Acinas, Emmanuel Boss, Michael Follows, Gabriel Gorsky, Nigel Grimsley, Lee Karp-Boss, Uros Krzic, Fabrice Not, Jeroen Raes, Emmanuel G. Reynaud, Christian Sardet, Sabrina Speich, Lars Stemmann, Jean Weissenbach, Didier Velayoudon

Nature Communications 9:310 (2018)10.1038/s41467-017-02235-3

2018
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection

Rekha Seshadri, Sinead Leahy, Graeme Attwood, Koon Hoong Teh, Suzanne Lambie, Adrian Cookson, Emiley Eloe-Fadrosh, Georgios Pavlopoulos, Michalis Hadjithomas, Neha Varghese, David Páez-Espino, Rechelle Perry, Gemma Henderson, Christopher J. Creevey, Nicolas Terrapon, Pascal Lapébie, Elodie Drula, Vincent Lombard, Edward M. Rubin, Nikos Kyrpides, Bernard Henrissat, Tanja Woyke, Natalia Ivanova, William Kelly, Nikola Palevich, Peter Janssen, Ron Ronimus, Samantha Noel, Priya Soni, Kerri Reilly, Todd Atherly, Cherie Ziemer, Andre-Denis Wright, Suzanne Ishaq, Michael Cotta, Stephanie Thompson, Katie Crosley, Nest Mckain, R John Wallace, Harry Flint, Jennifer Martin, Robert Forster, Robert Gruninger, Tim Mcallister, Rosalind Gilbert, Diane Ouwerkerk, Athol Klieve, Rafat Al Jassim, Stuart Denman, Chris Mcsweeney, Carly Rosewarne, Satoshi Koike, yasuo Kobayashi, Makoto Mitsumori, Takumi Shinkai, Silvio Cravero, María Cerón Cucchi, Chris Creevey

Nature Biotechnology 36:359-367 (2018)10.1038/nbt.4110

2018
PULDB: the expanded database of Polysaccharide Utilization Loci

Nicolas Terrapon, Vincent Lombard, Elodie Drula, Pascal Lapébie, Saad Al-Masaudi, Harry Gilbert, Bernard Henrissat

Nucleic Acids Research 46:D677-D683 (2018)10.1093/nar/gkx1022

2017

2017
Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation

Olov Svartström, Johannes Alneberg, Nicolas Terrapon, Vincent Lombard, Ino de Bruijn, Jonas Malmsten, Ann-Marie Dalin, Emilie El Muller, Pranjul Shah, Paul Wilmes, Bernard Henrissat, Henrik Aspeborg, Anders Andersson

ISME Journal 11:2538-2551 (2017)10.1038/ismej.2017.108

2017
Discovery of genes coding for carbohydrate-active enzyme by metagenomic analysis of lignocellulosic biomasses

Salvatore Montella, Valeria Ventorino, Vincent Lombard, Bernard Henrissat, Olimpia Pepe, Vincenza Faraco

Scientific Reports 7:42623 (2017)10.1038/srep42623

2017
Comparative Metagenomics of Cellulose- and Poplar Hydrolysate-Degrading Microcosms from Gut Microflora of the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus) after Long-Term Enrichment

Mabel Wong, Weijun Wang, Marie Couturier, Fakhria Razeq, Vincent Lombard, Pascal Lapébie, Elizabeth Edwards, Nicolas Terrapon, Bernard Henrissat, Emma Master

Frontiers in Microbiology 8:2504 (2017)10.3389/fmicb.2017.02504

2017
A bioinformatics analysis of 3400 lytic polysaccharide oxidases from family AA9

Nicolas Lenfant, Matthieu Hainaut, Nicolas Terrapon, Elodie Drula, Vincent Lombard, Bernard Henrissat

Carbohydrate Research 448:166-174 (2017)10.1016/j.carres.2017.04.012

2017
How members of the human gut microbiota overcome the sulfation problem posed by glycosaminoglycans

Alan Cartmell, Elisabeth Lowe, Arnaud Basle, Susan Firbank, Didier Ndeh, Heath Murray, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Jeremy E Turnbull, Mirjam Czjzek, Harry Gilbert, David Bolam

Proceedings of the National Academy of Sciences of the United States of America 114:7037-7042 (2017)10.1073/pnas.1704367114

2017
Feed in summer, rest in winter: microbial carbon utilization in forest topsoil

Lucia Zifcakova, Tomas Vetrovsky, Vincent Lombard, Bernard Henrissat, Adina Howe, Petr Baldrian

Microbiome 5:np (2017)10.1186/s40168-017-0340-0

2017
A Metagenomics Investigation of Carbohydrate-Active Enzymes along the Gastrointestinal Tract of Saudi Sheep

Saad Al-Masaudi, Abdessamad El Kaoutari, Elodie Drula, Hussein Al-Mehdar, Elrashdy M. Redwan, Vincent Lombard, Bernard Henrissat

Frontiers in Microbiology 8:np (2017)10.3389/fmicb.2017.00666

2017
Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome

Lizi Bensoussan, Sarah Moraïs, Bareket Dassa, Nir Friedman, Bernard Henrissat, Vincent Lombard, Edward Bayer, Itzhak Mizrahi

Environmental Microbiology 19:185-197 (2017)10.1111/1462-2920.13561

2017
Pan-Cellulosomics of Mesophilic Clostridia: Variations on a Theme

Bareket Dassa, Ilya Borovok, Vincent Lombard, Bernard Henrissat, Raphael Lamed, Edward Bayer, Sarah Moraïs

Microorganisms 5:74 (2017)10.3390/microorganisms5040074

2016

2016
CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems

Anne Abot, Grégory Arnal, Lucas Auer, Adèle Lazuka, Delphine Labourdette, Sophie Lamarre, Lidwine Trouilh, Elisabeth Laville, Vincent Lombard, Gabrielle Potocki-Veronese, Bernard Henrissat, Michael O’donohue, Guillermina Hernandez-Raquet, Claire Dumon, Véronique Le Berre

BMC Genomics 17:1-12 (2016)10.1186/s12864-016-2988-4

2016
Dividing the Large Glycoside Hydrolase Family 43 into Subfamilies: a Motivation for Detailed Enzyme Characterization

Keith Mewis, Nicolas Lenfant, Vincent Lombard, Bernard Henrissat

Applied and Environmental Microbiology 82:1686-1692 (2016)10.1128/AEM.03453-15

2016
Composting-Like Conditions Are More Efficient for Enrichment and Diversity of Organisms Containing Cellulase-Encoding Genes than Submerged Cultures

Senta Heiss-Blanquet, Francoise M Fayolle-Guichard, Vincent M Lombard, Agnès M Hébert, Pedro M Coutinho, Alexis Groppi, Aurélien Barré, Bernard Henrissat

PLoS ONE 11:497-497 (2016)10.1371/journal.pone.0167216

2016
Increased Gut Redox and Depletion of Anaerobic and Methanogenic Prokaryotes in Severe Acute Malnutrition

Matthieu Million, Maryam Tidjani Alou, Saber Khelaifia, Dipankar Bachar, Jean-Christophe J.-C. Lagier, Niokhor Dione, Souleymane Brah, Perrine Hugon, Vincent Lombard, Fabrice Armougom, Julien Fromonot, Catherine Robert, Caroline Michelle, Aldiouma Diallo, Alexandre Fabre, Régis Guieu, Cheikh Sokhna, Bernard Henrissat, Philippe Parola, Didier Raoult

Scientific Reports 6:26051 (2016)10.1038/srep26051

2016
Fungal secretomics of ascomycete fungi for biotechnological applications

Marie Couturier, David Navarro, Anne Favel, Mireille Haon, C. Lechat, Laurence Lesage-Meessen, Didier Chevret, Vincent Lombard, Bernard Henrissat, Jean-Guy Berrin

Mycosphere Journal 7:1546-1553 (2016)10.5943/mycosphere/si/3b/6

2015

2015
Gut microbiota richness promotes its stability upon increased dietary fibre intake in healthy adults

Julien Tap, Jean-Pierre Furet, Martine Bensaada, Catherine Philippe, Hubert Roth, Sylvie Rabot, Omar Lakhdari, Vincent Lombard, Bernard Henrissat, Gerard Corthier, Eric Fontaine, Joel Dore, Marion Leclerc

Environmental Microbiology 17:4954-4964 (2015)10.1111/1462-2920.13006

2015
Automatic prediction of polysaccharide utilization loci in Bacteroidetes species

Nicolas Terrapon, Vincent Lombard, Harry J. Gilbert, Bernard Henrissat

Bioinformatics 31:647-655 (2015)10.1093/bioinformatics/btu716

2014

2014
Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

Robert Riley, Asaf A. Salamov, Daren W. Brown, Laszlo G. Nagy, Dimitrios Floudas, Benjamin W. Held, Anthony Levasseur, Vincent Lombard, Emmanuelle Morin, Robert Otillar, Erika A. Lindquist, Hui Sun, Kurt M. Labutti, Jeremy Schmutz, Dina Jabbour, Hong Luo, Scott E. Baker, Antonio G. Pisabarro, Jonathan D. Walton, Robert A. Blanchette, Bernard Henrissat, Francis Martin, Dan Cullen, David S. Hibbett, Igor V. Grigoriev

Proceedings of the National Academy of Sciences of the United States of America 111:9923-9928 (2014)10.1073/pnas.1400592111

2014
Structural and biochemical characterization of the β-N-acetylglucosaminidase from Thermotoga maritima: toward rationalization of mechanistic knowledge in the GH73 family

Alexandra Lipski, Mireille Hervé, Vincent Lombard, Didier Nurizzo, Dominique Mengin-Lecreulx, yves Bourne, Florence Vincent

Glycobiology 25:319-330 (2014)10.1093/glycob/cwu113

2014
The genome of the white-rot fungus [i]Pycnoporus cinnabarinus[/i]: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown

Anthony Levasseur, Anne Lomascolo, Olivier Chabrol, Francisco J Ruiz-Dueñas, Eva Boukhris-Uzan, Francois Piumi, Ursula Kües, Arthur F J Ram, Claude Murat-Furminieux, Mireille Haon, Isabelle Benoit, yonathan Arfi, Didier Chevret, Elodie Drula, Min Jin Kwon, Philippe Gouret, Laurence Lesage-Meessen, Vincent Lombard, Jérôme J. Mariette, Celine Noirot, Joohae Park, Aleksandrina Patyshakuliyeva, Jean-Claude Sigoillot, Ad Wiebenga, Han a B Wösten, Francis Martin, Pedro M Coutinho, Ronald P de Vries, Angel T Martínez, Christophe C. Klopp, Pierre Pontarotti, Bernard Henrissat, Eric Record

BMC Genomics 15:486 (2014)10.1186/1471-2164-15-486

2013

2013
Dissecting Partner Recognition by an Intrinsically Disordered Protein Using Descriptive Random Mutagenesis

Antoine Gruet, Marion Dosnon, Andrea Vassena, Vincent Lombard, Denis Gerlier, Christophe Bignon, Sonia Longhi

Journal of Molecular Biology 425:3495-3509 (2013)10.1016/j.jmb.2013.06.025

2013
Role of Glycoside Phosphorylases in Mannose Foraging by Human Gut Bacteria

Simon Ladeveze, Laurence Tarquis, Davide Cecchini, Juliette Bercovici, Isabelle André, Christopher Topham, Sandrine Morel, Elisabeth Laville, Pierre Monsan, Vincent Lombard, Bernard Henrissat, Gabrielle Potocki-Veronese

Journal of Biological Chemistry 288:32370-32383 (2013)10.1074/jbc.M113.483628

2013
Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

Anthony Levasseur, Elodie Drula, Vincent Lombard, Pedro M Coutinho, Bernard Henrissat

Biotechnology for Biofuels 6:1-14 (2013)10.1186/1754-6834-6-41

2013
Correction for Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche (vol 109, pg 17501, 2012)

Emmanuelle Morin, Annegret Kohler, Adam R. Baker, Marie Foulongne-Oriol, Julien Lombard, Laszlo G. Nagy, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Annick Brun-Jacob, Andrea L. Aerts, Andrew M. Bailey, Christophe Billette, Pedro M Coutinho, Greg Deakin, Harshavardhan Doddapaneni, Dimitrios Floudas, Jane Grimwood, Kristiina Hildén, Ursula Kües, Kurt M. Labutti, Alla Lapidus, Erika A. Lindquist, Susan M. Lucas, Claude Murat-Furminieux, Robert W. Riley, Asaf A. Salamov, Jeremy Schmutz, Venkataramanan Subramanian, Han A. B. Wösten, Jianping Xu, Daniel C. Eastwood, Gary D. Foster, Anton S. M. Sonnenberg, Dan Cullen, Ronald P. de Vries, Taina Lundell, David S. Hibbett, Bernard Henrissat, Kerry S. Burton, Richard W. Kerrigan, Michael P. Challen, Igor V. Grigoriev, Francis Martin

Proceedings of the National Academy of Sciences of the United States of America 110:4146-4146 (2013)10.1073/pnas.1300201110

2012

2012
The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes

Dimitrios Floudas, Manfred Binder, Robert Riley, Kerrie Barry, Robert A. Blanchette, Bernard Henrissat, Angel T. Martínez, Robert Otillar, Joseph W. Spatafora, Jagjit S. yadav, Andrea Aerts, Isabelle Benoit, Alex Boyd, Alexis Carlson, Alex Copeland, Pedro M Coutinho, Ronald P. de Vries, Patricia Ferreira, Keisha Findley, Brian Foster, Jill Gaskell, Dylan Glotzer, Pawel Górecki, Joseph Heitman, Cedar Hesse, Chiaki Hori, Kiyohiko Igarashi, Joel A. Jurgens, Nathan Kallen, Phil Kersten, Annegret Kohler, Ursula Kües, T. K. Arun Kumar, Alan Kuo, Kurt Labutti, Luis F. Larrondo, Erika Lindquist, Albee Ling, Vincent Lombard, Susan Lucas, Taina Lundell, Rachael Martin, David J. Mclaughlin, Ingo Morgenstern, Emmanuelle Morin, Claude Murat-Furminieux, Laszlo G. Nagy, Matt Nolan, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Antonis Rokas, Francisco J. Ruiz-Dueñas, Grzegorz Sabat, Asaf Salamov, Masahiro Samejima, Jeremy Schmutz, Jason C. Slot, Franz St. John, Jan Stenlid, Hui Sun, Sheng Sun, Khajamohiddin Syed, Adrian Tsang, Ad Wiebenga, Darcy young, Antonio Pisabarro, Daniel C. Eastwood, Francis Martin, Dan Cullen, Igor V. Grigoriev, David S. Hibbett

Science 336:1715-1719 (2012)10.1126/science.1221748

2012
Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.

Ake Olson, Andrea Aerts, Fred Asiegbu, Lassaâd Belbahri, Ourdia Bouzid, Anders Broberg, Björn Canbäck, Pedro M Coutinho, Dan Cullen, Kerstin Dalman, Giuliana Deflorio, Linda T A van Diepen, Christophe Dunand, Sébastien Duplessis, Mikael Durling, Paul Gonthier, Jane Grimwood, Carl Gunnar Fossdal, David Hansson, Bernard Henrissat, Ari Hietala, Kajsa Himmelstrand, Dirk Hoffmeister, Nils Högberg, Timothy y James, Magnus Karlsson, Annegret Kohler, Ursula Kues, yong-Hwan Lee, yao-Cheng Lin, Mårten Lind, Erika Lindquist, Vincent Lombard, Susan Lucas, Karl Lundén, Emmanuelle Morin, Claude Murat, Jongsun Park, Tommaso Raffaello, Pierre Rouzé, Asaf Salamov, Jeremy Schmutz, Halvor Solheim, Jerry Ståhlberg, Heriberto Vélëz, Ronald P de Vries, Ad Wiebenga, Steve Woodward, Igor yakovlev, Matteo Garbelotto, Francis Martin, Igor V. Grigoriev, Jan Stenlid

New Phytologist 194:1001-1013 (2012)10.1111/j.1469-8137.2012.04128.x

2010

2010
A hierarchical classification of polysaccharide lyases for glycogenomics

Vincent Lombard, Thomas Bernard, Corinne Rancurel, Harry Brumer, Pedro M Coutinho, Bernard Henrissat

Biochemical Journal 432:437-444 (2010)10.1042/BJ20101185