Publications
AFMB collection in HAL: here
2023
Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes
Matus Valach, Sandrine Moreira, Celine Petitjean, Corinna Benz, Anzhelika Butenko, Olga Flegontova, Anna Nenarokova, Galina Prokopchuk, Tom Batstone, Pascal Lapébie, Lionnel Lemogo, Matt Sarrasin, Paul Stretenowich, Pragya Tripathi, Euki Yazaki, Takeshi Nara, Bernard Henrissat, B Franz Lang, Michael Gray, Tom Williams, Julius Lukeš, Gertraud Burger, B. Franz Lang
BMC Biology 21:99 (2023)10.1186/s12915-023-01563-9
Stable functional structure despite high taxonomic variability across fungal communities in soils of old-growth montane forests
Qingchao Zeng, Annie Lebreton, Lucas Auer, Xiaowu Man, Liukun Jia, Gengshen Wang, Sai Gong, Vincent Lombard, Marc Buée, Gang Wu, Yucheng Dai, Zhuliang Yang, Francis M Martin
Microbiome 11:217 (2023)10.1186/s40168-023-01650-7
Structural basis of Ty1 integrase tethering to RNA polymerase III for targeted retrotransposon integration
Phong Quoc Nguyen, Sonia Huecas, Amna Asif-Laidin, Adrián Plaza-Pegueroles, Beatrice Capuzzi, Noé Palmic, Christine Conesa, Joël Acker, Juan Reguera, Pascale Lesage, Carlos Fernández-Tornero
Nature Communications 14:1729 (2023)10.1038/s41467-023-37109-4
Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness
Romain David, Audrey Richard, Claire Connellan, Katharina Lauer, Maria Luisa Chiusano, Carole Goble, Martin Houde, Isabel Kemmer, Antje Keppler, Philippe Lieutaud, Christian Ohmann, Maria Panagiotopoulou, Sara Raza Khan, Arina Rybina, Stian Soiland-Reyes, Charlotte Wit, Rudolf Wittner, Rafael Andrade Buono, Sarah Arnaud Marsh, Pauline Audergon, Dylan Bonfils, Jose-Maria Carazo, Remi Charrel, Frederik Coppens, Wolfgang Fecke, Claudia Filippone, Eva Garcia Alvarez, Sheraz Gul, Henning Hermjakob, Katja Herzog, Petr Holub, Lukasz Kozera, Allyson Lister, José López-Coronado, Bénédicte Madon, Kurt Majcen, William Martin, Wolfgang Müller, Elli Papadopoulou, Christine M.A. Prat, Paolo Romano, Susanna-Assunta Sansone, Gary Saunders, Niklas Blomberg, Jonathan Ewbank
CODATA Data Science Journal 22:35 (2023)10.5334/dsj-2023-035
The ESTHER database on alpha/beta hydrolase fold proteins - An overview of recent developments
Arnaud Chatonnet, Michel Perochon, Eric Velluet, Pascale Marchot
Chemico-Biological Interactions 383:110671 (2023)10.1016/j.cbi.2023.110671
Structures of active Hantaan virus polymerase uncover the mechanisms of Hantaviridae genome replication
Quentin Durieux Trouilleton, Sergio Barata-García, Benoît Arragain, Juan Reguera, Hélène Malet
Nature Communications 14:2954 (2023)10.1038/s41467-023-38555-w
An OMA1 redox site controls mitochondrial homeostasis, sarcoma growth, and immunogenicity
Richard Miallot, Virginie Millet, Yann Groult, Angelika Modelska, Lydie Crescence, Sandrine Roulland, Sandrine Henri, Bernard Malissen, Nicolas Brouilly, Laurence Panicot-Dubois, Renaud Vincentelli, Gerlind Sulzenbacher, Pascal Finetti, Aurélie Dutour, Jean-Yves Blay, François Bertucci, Franck Galland, Philippe Naquet
Life Science Alliance 6 (2023)10.26508/lsa.202201767
Structural basis and dynamics of Chikungunya alphavirus RNA capping by nsP1 capping pores
Rhian Jones, Michael Hons, Nadia Rabah, Noelia Zamarreño, Rocío Arranz, Juan Reguera
Proceedings of the National Academy of Sciences of the United States of America 120 (2023)10.1073/pnas.2213934120
Discovery of a PDZ Domain Inhibitor Targeting the Syndecan/Syntenin Protein–Protein Interaction: A Semi-Automated “Hit Identification-to-Optimization” Approach
Laurent Hoffer, Manon Garcia, Raphael Leblanc, Mikael Feracci, Stéphane Betzi, Khaoula Ben Yaala, Avais Daulat, Pascale Zimmermann, Philippe Roche, Karine Barral, Xavier Morelli
Journal of Medicinal Chemistry (2023)10.1021/acs.jmedchem.2c01569
A global phylogenomic analysis of the shiitake genus Lentinula
Sean Sierra-Patev, Byoungnam Min, Miguel Naranjo-Ortiz, Brian Looney, Zachary Konkel, Jason Slot, Yuichi Sakamoto, Jacob Steenwyk, Antonis Rokas, Juan Carro, Susana Camarero, Patricia Ferreira, Gonzalo Molpeceres, Francisco Ruiz-Dueñas, Ana Serrano, Bernard Henrissat, Elodie Drula, Karen Hughes, Juan Mata, Noemia Kazue Ishikawa, Ruby Vargas-Isla, Shuji Ushijima, Chris Smith, John Donoghue, Steven Ahrendt, William Andreopoulos, Guifen He, Kurt Labutti, Anna Lipzen, Vivian Ng, Robert Riley, Laura Sandor, Kerrie Barry, Angel Martínez, Yang Xiao, John Gibbons, Kazuhisa Terashima, Igor Grigoriev, David Hibbett
Proceedings of the National Academy of Sciences of the United States of America 120:e2214076120 (2023)10.1073/pnas.2214076120
Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus
Jonathan M Plett, Shingo Miyauchi, Emmanuelle Morin, Krista Plett, Johanna Wong-Bajracharya, Maira de Freitas Pereira, Alan Kuo, Bernard Henrissat, Elodie Drula, Dominika Wojtalewicz, Robert Riley, Jasmyn Pangilinan, William Andreopoulos, Kurt Labutti, Chris Daum, Yuko Yoshinaga, Laure Fauchery, Vivian Ng, Anna Lipzen, Kerrie Barry, Vasanth Singan, Jie Guo, Teresa Lebel, Mauricio Dutra Costa, Igor V Grigoriev, Francis Martin, Ian C Anderson, Annegret Kohler
Molecular Biology and Evolution 40:msad045 (2023)10.1093/molbev/msad045
Interplay of RNA 2′-O-methylations with viral replication
Alice Decombe, Priscila El Kazzi, Etienne Decroly
Current Opinion in Virology 59:101302 (2023)10.1016/j.coviro.2023.101302
Report from the 28th Meeting on Toxinology, “Toxins: What’s up, Doc?”, Organized by the French Society of Toxinology on 28–29 November 2022
P. Marchot, Évelyne Benoit, Ziad Fajloun, Sylvie Diochot
Toxins 15:126 (2023)10.3390/toxins15020126
Guidelines for the Simulations of Nitroxide X-Band cw EPR Spectra from Site-Directed Spin Labeling Experiments Using SimLabel
Emilien Etienne, Annalisa Pierro, Ketty C Tamburrini, Alessio Bonucci, Elisabetta Mileo, Marlène Martinho, Valérie Belle
Molecules 28:1348 (2023)10.3390/molecules28031348
Biochemistry of the Respiratory Syncytial Virus L Protein Embedding RNA Polymerase and Capping Activities
Priscila Sutto-Ortiz, Jean-François Eléouët, François Ferron, Etienne Decroly
Viruses 15:341 (2023)10.3390/v15020341
Liaisons dangereuses: Intrinsic Disorder in Cellular Proteins Recruited to Viral Infection-Related Biocondensates
Greta Bianchi, Stefania Brocca, Sonia Longhi, Vladimir N Uversky
International Journal of Molecular Sciences 24:2151 (2023)10.3390/ijms24032151
Design and synthesis of naturally-inspired SARS-CoV-2 inhibitors
Haitham Hassan, Jeanne Chiavaralli, Afnan Hassan, Loay Bedda, Tim Krischuns, Kuang-Yu Chen, Alice Shi Ming Li, Adrien Delpal, Etienne Decroly, Masoud Vedadi, Nadia Naffakh, Fabrice Agou, Sergio Mallart, Reem Arafa, Paola Arimondo
RSC Medicinal Chemistry 14:507-519 (2023)10.1039/D2MD00149G
A subfamily classification to choreograph the diverse activities within glycoside hydrolase family 31
Thimali Arumapperuma, Jinling Li, Bastian Hornung, Niccolay Madiedo Soler, Ethan Goddard-Borger, Nicolas Terrapon, Spencer Williams
Journal of Biological Chemistry 299:103038 (2023)10.1016/j.jbc.2023.103038
AT-752 targets multiple sites and activities on the Dengue virus replication enzyme NS5
Mikael Feracci, Cécilia Eydoux, Véronique Fattorini, Lea Lo Bello, Pierre Gauffre, Barbara Selisko, Priscila Sutto-Ortiz, Ashleigh Shannon, Hongjie Xia, Pei-Yong Shi, Mathieu Noel, Françoise Debart, Jean-Jacques Vasseur, Steve Good, Kai Lin, Adel Moussa, Jean-Pierre Sommadossi, Aurélie Chazot, Karine Alvarez, Jean-Claude Guillemot, Etienne Decroly, François Ferron, Bruno Canard
Antiviral Research 212:105574 (2023)10.1016/j.antiviral.2023.105574
An HMM approach expands the landscape of sesquiterpene cyclases across the kingdom Fungi
Hayat Hage, Julie Couillaud, Asaf Salamov, Margot Loussouarn-Yvon, Fabien Durbesson, Elena Ormeño, Sacha Grisel, Katia Duquesne, Renaud Vincentelli, Igor Grigoriev, Gilles Iacazio, Marie-Noëlle Rosso
Microbial Genomics 9:000990 (2023)10.1099/mgen.0.000990
Macro1 domain residue F156: A hallmark of SARS-CoV-2 de-MARylation specificity
Oney Ortega Granda, Karine Alvarez, Maria J Mate-Perez, Bruno Canard, François Ferron, Nadia Rabah
Virology 587:109845 (2023)10.1016/j.virol.2023.109845
Activity and Crystal Structure of the Adherent-Invasive Escherichia coli Tle3/Tli3 T6SS Effector/Immunity Complex Determined Using an AlphaFold2 Predicted Model
Thi Thu Hang Le, Christine Kellenberger, Marie Boyer, Pierre Santucci, Nicolas Flaugnatti, Eric Cascales, Alain Roussel, Stéphane Canaan, Laure Journet, Christian Cambillau
International Journal of Molecular Sciences 24:1740 (2023)10.3390/ijms24021740
Per Aspera ad Chaos: Vladimir Uversky’s Odyssey through the Strange World of Intrinsically Disordered Proteins
Prakash Kulkarni, Stefania Brocca, A. Keith Dunker, Sonia Longhi
Biomolecules 13:1015 (2023)10.3390/biom13061015
Amino Acid Polymorphisms on the Brazilian Strain of Yellow Fever Virus Methyltransferase Are Related to the Host’s Immune Evasion Mediated by Type I Interferon
Nathália Dias Furtado, Iasmim Silva de Mello, Andre Schutzer de Godoy, Gabriela Dias Noske, Glaucius Oliva, Bruno Canard, Etienne Decroly, Myrna Bonaldo
Viruses 15:191 (2023)10.3390/v15010191
Conidium Specific Polysaccharides in Aspergillus fumigatus
Zhonghua Liu, Isabel Valsecchi, Rémy A Le Meur, Catherine Simenel, J. Iñaki Guijarro, Catherine Comte, Laetitia Muszkieta, Isabelle Mouyna, Bernard Henrissat, Vishukumar Aimanianda, Jean-Paul Latgé, Thierry Fontaine
Journal of Fungi 9:155 (2023)10.3390/jof9020155
Minimum information guidelines for experiments structurally characterizing intrinsically disordered protein regions
Bálint Mészáros, András Hatos, Nicolas Palopoli, Federica Quaglia, Edoardo Salladini, Kim van Roey, Haribabu Arthanari, Zsuzsanna Dosztányi, Isabella C Felli, Patrick D Fischer, Jeffrey C Hoch, Cy M Jeffries, Sonia Longhi, Emiliano Maiani, Sandra Orchard, Rita Pancsa, Elena Papaleo, Roberta Pierattelli, Damiano Piovesan, Iva Pritisanac, Luiggi Tenorio, Thibault Viennet, Peter Tompa, Wim Vranken, Silvio C E Tosatto, Norman E Davey
Nature Methods (2023)10.1038/s41592-023-01915-x
Structure-guided optimization of adenosine mimetics as selective and potent inhibitors of coronavirus nsp14 N7-methyltransferases
Marcel Hausdorff, Adrien Delpal, Sarah Barelier, Laura Nicollet, Bruno Canard, Franck Touret, Agathe Colmant, Bruno Coutard, Jean-Jacques Vasseur, Etienne Decroly, Françoise Debart
European Journal of Medicinal Chemistry (2023)10.1016/j.ejmech.2023.115474
Fluorescence polarisation activity-based protein profiling for the identification of deoxynojirimycin-type inhibitors selective for lysosomal retaining alpha- and beta-glucosidases
Daniël van der Gracht, Rhianna J Rowland, Véronique Roig-Zamboni, Maria J Ferraz, Max Louwerse, Paul P Geurink, Johannes M F G Aerts, Gerlind Sulzenbacher, Gideon J Davies, Herman S Overkleeft, Marta Artola
Chemical Science 14:9136-9144 (2023)10.1039/d3sc01021j
