AFMB collection in HAL: here

2012

2012
The Structure of Human DNase I Bound to Magnesium and Phosphate Ions Points to a Catalytic Mechanism Common to Members of the DNase I-like Superfamily

Goetz Parsiegla, Christophe Noguere, Lydia Santell, Robert Lazarus, Yves Bourne

Biochemistry 51:10250-10258 (2012)10.1021/bi300873f

2012
Antiviral chlorinated daphnane diterpenoid orthoesters from the bark and wood of Trigonostemon cherrieri.

Pierre-Marie Allard, Pieter Leyssen, Marie-Thérèse Martin, Mélanie Bourjot, Vincent Dumontet, Cécilia Eydoux, Jean-Claude Guillemot, Bruno Canard, Cyril Poullain, Françoise Guéritte, Marc Litaudon

Phytochemistry 84:160-8 (2012)10.1016/j.phytochem.2012.07.023

2012
The Structural Basis of Force Generation by the Mitotic Motor Kinesin-5

Adeline Goulet, William M Behnke-Parks, Charles V Sindelar, Jennifer Major, Steven S Rosenfeld, Carolyn A Moores

Journal of Biological Chemistry 287:44654-44666 (2012)10.1074/jbc.m112.404228

2012
Crystal structure of the VgrG1 actin cross-linking domain of the Vibrio cholerae type VI secretion system.

Eric Durand, Estelle Derrez, Gilles Audoly, Silvia Spinelli, Miguel Ortiz-Lombardia, Didier Raoult, E. Cascales, Christian Cambillau

Journal of Biological Chemistry 287:38190-9 (2012)10.1074/jbc.M112.390153

2012
Chemical constituents of Anacolosa pervilleana and their antiviral activities.

Mélanie Bourjot, Pieter Leyssen, Cécilia Eydoux, Jean-Claude Guillemot, Bruno Canard, Philippe Rasoanaivo, Françoise Guéritte, Marc Litaudon

Fitoterapia 83:1076-1080 (2012)10.1016/j.fitote.2012.05.004

2012
Structure of the phage TP901-1 1.8 MDa baseplate suggests an alternative host adhesion mechanism

D. Veesler, S. Spinelli, J. Mahony, J. Lichiere, S. Blangy, G. Bricogne, P. Legrand, M. Ortiz-Lombardia, V. Campanacci, D. van Sinderen, C. Cambillau

Proceedings of the National Academy of Sciences of the United States of America 109:8954-8958 (2012)10.1073/pnas.1200966109

2012
Exploitation of β -glycosyl azides for the preparation of α -glycosynthases

Beatrice Cobucci-Ponzano, Carmela Zorzetti, Andrea Strazzulli, Emiliano Bedini, Maria Michela Corsaro, Gerlind Sulzenbacher, Mos È Rossi, Marco Moracci

Biocatalysis and Biotransformation (2012)10.3109/10242422.2012.679814

2012
Flacourtosides A-F, Phenolic Glycosides Isolated from Flacourtia ramontchi.

Mélanie Bourjot, Pieter Leyssen, Cécilia Eydoux, Jean-Claude Guillemot, Bruno Canard, Philippe Rasoanaivo, Françoise Guéritte, Marc Litaudon

Journal of Natural Products 75:752-8 (2012)10.1021/np300059n

2012
Structural Insights into Antibody Sequestering and Neutralizing of Na+ Channel α-Type Modulator from Old World Scorpion Venom.

Igor P Fabrichny, Grégoire Mondielli, Sandrine Conrod, Marie-France Martin-Eauclaire, Yves Bourne, Pascale Marchot

Journal of Biological Chemistry 287:14136-48 (2012)10.1074/jbc.M111.315382

2012
Plasticity in Structural and Functional Interactions between the Phosphoprotein and Nucleoprotein of Measles Virus

Yaoling Shu, Johnny Habchi, Stéphanie Costanzo, Andre Padilla, Joanna Brunel, Denis Gerlier, Michael Oglesbee, Sonia Longhi

Journal of Biological Chemistry 287:11951-11967 (2012)10.1074/jbc.M111.333088

2012
Structural characterization and oligomerization of the TssL protein, a component shared by bacterial type VI and type IVb secretion systems.

Eric Durand, Abdelrahim Zoued, Silvia Spinelli, Paul J H Watson, Marie-Stéphanie Aschtgen, Laure Journet, Christian Cambillau, E. Cascales

Journal of Biological Chemistry 287:14157-68 (2012)10.1074/jbc.M111.338731

2012
On the path to uncover the bacterial type II secretion system.

Badreddine Douzi, Alain Filloux, Romé Voulhoux

Philos. Trans. R. Soc. Lond., B, Biol. Sci. 367:1059-72 (2012)10.1098/rstb.2011.0204

2012
Structural biology of type VI secretion systems.

E. Cascales, Christian Cambillau

Philos. Trans. R. Soc. Lond., B, Biol. Sci. 367:1102-11 (2012)10.1098/rstb.2011.0209

2012
Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants.

Maria Cecilia Arias, Etienne G J Danchin, Pedro Coutinho, Bernard Henrissat, Steven Ball

Mobile Genetic Elements 2:81-87 (2012)10.4161/mge.20375

2012
Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)

Henrik Aspeborg, Pedro M Coutinho, Yang Wang, Harry Brumer, Bernard Henrissat

BMC Evolutionary Biology 12:186 (2012)10.1186/1471-2148-12-186

2012
Single pH buffer refolding screen for protein from inclusion bodies

Bruno Coutard, Etienne Danchin, Rachid Oubelaid, Bruno Canard, Christophe Bignon

Protein Expression and Purification 82:352-359 (2012)10.1016/j.pep.2012.01.014

2012
Crystal Structure of ATVORF273, a New Fold for a Thermo- and Acido-Stable Protein from the Acidianus Two-Tailed Virus

Catarina Felisberto-Rodrigues, Stéphanie Blangy, Adeline Goulet, Gisle Vestergaard, Christian Cambillau, Roger Garrett, Miguel Ortiz-Lombardía

PLoS ONE 7:e45847 (2012)10.1371/journal.pone.0045847

2012
The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry

Pierre J. G. M. de Wit, Ate van Der Burgt, Bilal Okmen, Ioannis Stergiopoulos, Kamel A. Abd-Elsalam, Andrea L. Aerts, Ali H. Bahkali, Henriek G. Beenen, Pranav Chettri, Murray P. Cox, Erwin Datema, Ronald P. de Vries, Braham Dhillon, Austen R. Ganley, Scott A. Griffiths, Yanan Guo, Richard C. Hamelin, Bernard Henrissat, M. Shahjahan Kabir, Mansoor Karimi Jashni, Gert Kema, Sylvia Klaubauf, Alla Lapidus, Anthony Levasseur, Erika Lindquist, Rahim Mehrabi, Robin A. Ohm, Timothy J. Owen, Asaf Salamov, Arne Schwelm, Elio Schijlen, Hui Sun, Harrold A. van den Burg, Roeland C. H. J. van Ham, Shuguang Zhang, Stephen B. Goodwin, Igor V. Grigoriev, Jerome Collemare, Rosie E. Bradshaw

PLoS Genetics 8:np (2012)10.1371/journal.pgen.1003088

2012
Genome sequence of the model medicinal mushroom Ganoderma lucidum

Shilin Chen, Jiang Xu, Chang Liu, Yingjie Zhu, David R Nelson, Shiguo Zhou, Chunfang Li, Lizhi Wang, Xu Guo, Yongzhen Sun, Hongmei Luo, Ying Li, Jingyuan Song, Bernard Henrissat, Anthony Levasseur, Jun Qian, Jianqin Li, Xiang Luo, Linchun Shi, Liu He, Li Xiang, Xiaolan Xu, Yunyun Niu, Qiushi Li, Mira V Han, Haixia Yan, Jin Zhang, Haimei Chen, Aiping Lv, Zhen Wang, Mingzhu Liu, David C Schwartz, Chao Sun

Nature Communications 3:1-9 (2012)10.1038/ncomms1923

2012
Transcription et réplication des Mononegavirales : une machine moléculaire originale

David Blocquel, Jean-Marie Bourhis, Jean Francois J. F. Eleouet, Denis Gerlier, Johnny Habchi, Marc Jamin, Sonia Longhi, Filip Yabukarski

Virologie 16:225-257 (2012)10.1684/vir.2012.0458

2012
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

Emmanuelle Morin, Annegret Kohler, Adam R. Baker, Marie Foulongne-Oriol, Julien Lombard, Laszlo G. Nagy, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Annick Brun-Jacob, Andrea L. Aerts, Andrew M. Bailey, Christophe Billette, Pedro M Coutinho, Greg Deakin, Harshavardhan Doddapaneni, Dimitrios Floudas, Jane Grimwood, Kristiina Hildén, Ursula Kües, Kurt M. Labutti, Alla Lapidus, Erika A. Lindquist, Susan M. Lucas, Claude Murat-Furminieux, Robert W. Riley, Asaf A. Salamov, Jeremy Schmutz, Venkataramanan Subramanian, Han A. B. Wösten, Jianping Xu, Daniel C. Eastwood, Gary D. Foster, Anton S. M. Sonnenberg, Dan Cullen, Ronald P. de Vries, Taina Lundell, David S. Hibbett, Bernard Henrissat, Kerry S. Burton, Richard W. Kerrigan, Michael P. Challen, Igor V. Grigoriev, Francis Martin

Proceedings of the National Academy of Sciences of the United States of America 109:17501-17506 (2012)10.1073/pnas.1206847109

2012
Peptidoglycan: a post-genomic analysis.

Caroline Cayrou, Bernard Henrissat, Philippe Gouret, Pierre Pontarotti, Michel Drancourt

BMC Microbiology 12:294 (2012)10.1186/1471-2180-12-294

2012
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

Richard J O'Connell, Michael R Thon, Stéphane Hacquard, Stefan G Amyotte, Jochem Kleeman, Maria F Torres, Ulrike Damm, Ester A Buiate, Lynn Epstein, Noam Alkan, Janine Altmüller, Lucia Alvarado-Balderrama, Christopher A. Bauser, Christian Becker, Bruce W. Birren, Zehua Chen, Jaeyoung Choi, Jo Aann Crouch, Jonathan P. Duvick, Mark A. Farman, Pamela Gan, David Heiman, Bernard Henrissat, Richard J Howard, Mehdi Kabbage, Christian Koch, Barbara Kracher, Yasuyuki Kubo, Audrey D Law, Marc-Henri Lebrun, Yong-Hwan Lee, Itay Miyara, Neil Moore, Ulla Neumann, Karl Nordström, Daniel G Panaccione, Ralph Panstruga, Michael Place, Robert H Proctor, Dov Prusky, Gabriel Rech, Richard Reinhardt, Jeffrey A Rollings, Steve Rounsley, Christopher L Schardl, David C Schwartz, Narmada Shenoy, Ken Shirasu, Usha R Sikhakolli, Kurt Stüber, Serenella A Sukno, James A Sweigard, Yoshitaka Takano, Hiroyuki Takahara, Frances Trail, Charlotte H van Der Does, Lars M Voll, Isa Will, Sarah Young, Qiandong Zeng, Jingze Zhang, Shiguo Zhou, Martin B Dickman, Paul Schulze-Lefert, Emiel Ver Loren van Themaat, Li-Jun Ma, Lisa J Vaillancourt

Nature Genetics 44:1060-1065 (2012)10.1038/ng.2372

2012
The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes

Dimitrios Floudas, Manfred Binder, Robert Riley, Kerrie Barry, Robert A. Blanchette, Bernard Henrissat, Angel T. Martínez, Robert Otillar, Joseph W. Spatafora, Jagjit S. Yadav, Andrea Aerts, Isabelle Benoit, Alex Boyd, Alexis Carlson, Alex Copeland, Pedro M Coutinho, Ronald P. de Vries, Patricia Ferreira, Keisha Findley, Brian Foster, Jill Gaskell, Dylan Glotzer, Pawel Górecki, Joseph Heitman, Cedar Hesse, Chiaki Hori, Kiyohiko Igarashi, Joel A. Jurgens, Nathan Kallen, Phil Kersten, Annegret Kohler, Ursula Kües, T. K. Arun Kumar, Alan Kuo, Kurt Labutti, Luis F. Larrondo, Erika Lindquist, Albee Ling, Vincent Lombard, Susan Lucas, Taina Lundell, Rachael Martin, David J. Mclaughlin, Ingo Morgenstern, Emmanuelle Morin, Claude Murat-Furminieux, Laszlo G. Nagy, Matt Nolan, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Antonis Rokas, Francisco J. Ruiz-Dueñas, Grzegorz Sabat, Asaf Salamov, Masahiro Samejima, Jeremy Schmutz, Jason C. Slot, Franz St. John, Jan Stenlid, Hui Sun, Sheng Sun, Khajamohiddin Syed, Adrian Tsang, Ad Wiebenga, Darcy Young, Antonio Pisabarro, Daniel C. Eastwood, Francis Martin, Dan Cullen, Igor V. Grigoriev, David S. Hibbett

Science 336:1715-1719 (2012)10.1126/science.1221748

2012
Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.

Ake Olson, Andrea Aerts, Fred Asiegbu, Lassaâd Belbahri, Ourdia Bouzid, Anders Broberg, Björn Canbäck, Pedro M Coutinho, Dan Cullen, Kerstin Dalman, Giuliana Deflorio, Linda T A van Diepen, Christophe Dunand, Sébastien Duplessis, Mikael Durling, Paul Gonthier, Jane Grimwood, Carl Gunnar Fossdal, David Hansson, Bernard Henrissat, Ari Hietala, Kajsa Himmelstrand, Dirk Hoffmeister, Nils Högberg, Timothy y James, Magnus Karlsson, Annegret Kohler, Ursula Kues, Yong-Hwan Lee, Yao-Cheng Lin, Mårten Lind, Erika Lindquist, Vincent Lombard, Susan Lucas, Karl Lundén, Emmanuelle Morin, Claude Murat, Jongsun Park, Tommaso Raffaello, Pierre Rouzé, Asaf Salamov, Jeremy Schmutz, Halvor Solheim, Jerry Ståhlberg, Heriberto Vélëz, Ronald P de Vries, Ad Wiebenga, Steve Woodward, Igor Yakovlev, Matteo Garbelotto, Francis Martin, Igor V. Grigoriev, Jan Stenlid

New Phytologist 194:1001-1013 (2012)10.1111/j.1469-8137.2012.04128.x

2012
Functional analysis of family GH36 α-galactosidases from Ruminococcus gnavus E1: insights into the metabolism of a plant oligosaccharide by a human gut symbiont

M. Cervera-Tison, L. E. Tailford, C. Fuell, L. Bruel, G. Sulzenbacher, Bernard Henrissat, Jean-Guy Berrin, M. Fons, T. Giardina, N. Juge

Applied and Environmental Microbiology 78:7720-7732 (2012)10.1128/AEM.01350-12

2012
Exploring the natural fungal biodiversity of tropical and temperate forests toward improvement of biomass conversion

Jean-Guy Berrin, David Navarro, Marie Couturier, Caroline Olive-Lauge, Sacha Grisel, Mireille Haon, Sabine Taussac, Christian Lechat, Régis Courtecuisse, Anne Favel, Pedro M Coutinho, Laurence Lesage-Meessen

Applied and Environmental Microbiology 78:6483-6490 (2012)10.1128/AEM.01651-12

2012
SAMHD1 restricts the replication of human immunodeficiency virus type 1 by depleting the intracellular pool of deoxynucleoside triphosphates

H. Lahouassa, W. Daddacha, H. Hofmann, D. Ayinde, E. C. Logue, L. Dragin, N. Bloch, C. Maudet, M. Bertrand, T. Gramberg, G. Pancino, S. Priet, B. Canard, Nadine Laguette, M. Benkirane, C. Transy, Nr Landau, B. Kim, F. Margottin-Goguet

Nature Immunology 13:223-8. doi: 10.1038/ni.2236 (2012)10.1038/ni.2236

2012
Compaction and binding properties of the intrinsically disordered C-terminal domain of Henipavirus nucleoprotein as unveiled by deletion studies

David Blocquel, Johnny Habchi, Antoine Gruet, Stéphanie Blangy, Sonia Longhi

Molecular BioSystems 8:392-410 (2012)10.1039/c1mb05401e

2012
Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis

Marie M. Couturier, David D. Navarro, Caroline Olive-Lauge Olive, Didier D. Chevret, Mireille M. Haon, Anne A. Favel, Laurence L. Lesage-Meessen, Bernard Henrissat, Pedro M Coutinho, Jean-Guy J.-G. Berrin

BMC Genomics 13:1-14 (2012)10.1186/1471-2164-13-57

2012
Synthesis of 5' cap-0 and cap-1 RNAs using solid-phase chemistry coupled with enzymatic methylation by human (guanine-N 7)-methyl transferase

Yann Thillier, Etienne Decroly, François Morvan, Bruno Canard, Jean-Jacques Vasseur, Françoise Debart

RNA 18:856-868 (2012)10.1261/rna.030932.111

2012
Molecular Basis for Nucleotide Conservation at the Ends of the Dengue Virus Genome

Barbara Selisko, Supanee Potisopon, Rym Agred, Stephane Priet, Isabelle Varlet, Yann Thillier, Corinne Sallamand, Françoise Debart, Jean-Jacques Vasseur, Bruno Canard

PLoS Pathogens 8:e1002912 (2012)10.1371/journal.ppat.1002912