Publications
AFMB collection in HAL: here
2018
Proteomic Dissection of the Cellulolytic Machineries Used by Soil-Dwelling Bacteroidetes
Marcel Taillefer, Magnus Arntzen, Bernard Henrissat, Phillip Pope, Johan Larsbrink
mSystems 3 (2018)10.1128/mSystems.00240-18
An ancient family of lytic polysaccharide monooxygenases with roles in arthropod development and biomass digestion
Federico Sabbadin, Glyn Hemsworth, Luisa Ciano, Bernard Henrissat, Paul P. Dupree, Theodora T. Tryfona, Rita Marques, Sean Sweeney, Katrin Besser, Luisa Elias, Giovanna Pesante, Yi Li, Adam Dowle, Rachel Bates, Leonardo Gomez, Rachael Simister, Gideon Davies, Paul Walton, Neil D.B. Bruce, Simon Mcqueen-Mason
Nature Communications 9:756 (2018)10.1038/s41467-018-03142-x
Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri
Tammi C. Vesth, Jane L. Nybo, Sebastian Theobald, Jens C. Frisvad, Thomas O. Larsen, Kristian F. Nielsen, Jakob B. Hoof, Julian Brandl, Asaf Salamov, Robert Riley, John M. Gladden, Pallavi Phatale, Morten Nielsen, Ellen Lyhne, Martin E. Kogle, Kimchi Strasser, Erin Mcdonnell, Kerrie Barry, Alicia Clum, Cindy Chen, Kurt Labutti, Sajeet Haridas, Matt Nolan, Laura Sandor, Alan Kuo, Anna Lipzen, Matthieu Hainaut, Elodie Drula, Adrian Tsang, Jon K. Magnuson, Bernard Henrissat, Ad Wiebenga, Blake A. Simmons, Miia R. Mäkelä, Ronald P. de Vries, Igor V. Grigoriev, Uffe H. Mortensen, Scott E. Baker, Mikael R. Handersen
Nature Genetics 50:1688-1695 (2018)10.1038/s41588-018-0246-1
Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Xiaoyu Liang, Jason Whitham, Evert Holwerda, Xiongjun Shao, Liang Tian, Yu-Wei Wu, Vincent Lombard, Bernard Henrissat, Dawn Klingeman, Zamin Yang, Mircea Podar, Tom Richard, James Elkins, Steven S Brown, Lee Lynd
Biotechnology for Biofuels 11:243 (2018)10.1186/s13068-018-1238-1
Ancient acquisition of “alginate utilization loci” by human gut microbiota
Sophie Mathieu, Mélanie Touvrey-Loiodice, Laurent Poulet, Sophie Drouillard, Renaud Vincentelli, Bernard Henrissat, Gudmund Skjåk-Bræk, William Helbert
Scientific Reports 8:8075 (2018)10.1038/s41598-018-26104-1
Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids
Ugo Cenci, Shannon Sibbald, Bruce Curtis, Ryoma Kamikawa, Laura Eme, Daniel Moog, Bernard Henrissat, Eric Marechal, Malika Chabi, Christophe Djemiel, Andrew Roger, Eunsoo Kim, John Archibald
BMC Biology 16:137 (2018)10.1186/s12915-018-0593-5
Widespread anti-CRISPR proteins in virulent bacteriophages inhibit a range of Cas9 proteins
Alexander Hynes, Geneviève Rousseau, Daniel Agudelo, Adeline Goulet, Béatrice Amigues, Jeremy Loehr, Dennis Romero, Christophe Fremaux, Philippe Horvath, Yannick Doyon, Christian Cambillau, Sylvain S. Moineau
Nature Communications 9:2919 (2018)10.1038/s41467-018-05092-w
Genome Sequencing and analyses of Two Marine Fungi from the North Sea Unraveled a Plethora of Novel Biosynthetic Gene Clusters
Abhishek Kumar, Jens Laurids Sørensen, Frederik Teilfeldt Hansen, Mikko Arvas, Muhammad Fahad Syed, Lara Hassan, J Philipp Benz, Eric Record, Bernard Henrissat, Stefanie Pöggeler, Frank Kempken, J. Philipp Benz
Scientific Reports 8:10187 (2018)10.1038/s41598-018-28473-z
Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi
Dániel Knapp, Julianna Németh, Kerrie Barry, Matt Hainaut, Bernard Henrissat, Jenifer Johnson, Alan Kuo, Joanne Hui Ping Lim, Anna Lipzen, Matt Nolan, Robin Ohm, László Tamás, Igor Grigoriev, Joseph Spatafora, Laszlo Nagy, Gabor G Kovacs, Matthieu Hainaut
Scientific Reports 8:6321 (2018)10.1038/s41598-018-24686-4
Structure of the type VI secretion system TssK–TssF–TssG baseplate subcomplex revealed by cryo-electron microscopy
Young-Jun Park, Kaitlyn Lacourse, Christian Cambillau, Frank Dimaio, Joseph D. Mougous, David Veesler
Nature Communications 9:5385 (2018)10.1038/s41467-018-07796-5
De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads
David W Eccles, Jodie Chandler, Mali Camberis, Bernard Henrissat, Sergey Koren, Graham Le Gros, Jonathan J. Ewbank
BMC Biology 16:6 (2018)10.1186/s12915-017-0473-4
The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet
Alexey Grum-Grzhimaylo, Daniel Falkoski, Joost van den Heuvel, Claudio Valero-Jiménez, Byoungnam Min, In-Geol Choi, Anna Lipzen, Chris Daum, Duur Aanen, Adrian Tsang, Bernard Henrissat, Elena Bilanenko, Ronald de Vries, Jan van Kan, Igor Grigoriev, Alfons Debets
Molecular Ecology 27:4808-4819 (2018)10.1111/mec.14912
Rewiring of RSK-PDZ Interactome by Linear Motif Phosphorylation.
Gergő Gógl, Beáta Biri-Kovács, Fabien Durbesson, Pau Jane, Yves Nominé, Camille Kostmann, Viktória Bilics, Márton Simon, Attila Reményi, Renaud Vincentelli, Gilles Travé, László Nyitray
Journal of Molecular Biology 17:1234-1249 (2018)10.1016/j.jmb.2019.01.038
Functional carbohydrate binding modules identified in evolved dits from siphophages infecting various Gram-positive bacteria
Stephen Hayes, Renaud Vincentelli, Jennifer Mahony, Arjen Nauta, Laurie Ramond, Gabriele Lugli, Marco Ventura, Douwe van Sinderen, Christian Cambillau
Molecular Microbiology 110:777-795 (2018)10.1111/mmi.14124
Leveraging single-cell genomics to expand the fungal tree of life
Steven Ahrendt, C Alisha Quandt, Doina Ciobanu, Alicia Clum, Asaf Salamov, Bill Andreopoulos, Jan-Fang Cheng, Tanja Woyke, Adrian Pelin, Bernard Henrissat, Nicole Reynolds, Gerald Benny, Matthew Smith, Timothy James, Igor Grigoriev
Nature Microbiology 3:1417-1428 (2018)10.1038/s41564-018-0261-0
A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)
Sean Ma, Yolanda Chen, Martin Ma, Joshua Benoit, Anita Bhandari, Julia Bowsher, Kristian Brevik, Kaat Cappelle, Mei-Ju Li, Anna Childers, Christopher Li, Olivier Christiaens, Justin Ma, Elise Didion, Elena Elpidina, Patamarerk Engsontia, Markus Ma, Inmaculada García-Robles, Richard Gibbs, Chandan Goswami, Alessandro Grapputo, Kristina Gruden, Marcin Ma, Bernard Ma, Emily Jennings, Jeffery Jones, Megha Kalsi, Sher Afzal Khan, Abhishek Kumar, Fei Li, Vincent Ma, Xingzhou Ma, Alex Martynov, Nicholas Miller, Robert Mitchell, Monica Muñoz-Torres, Anna Muszewska, Brenda Oppert, Subba Reddy Palli, Kristen Panfilio, Yannick Pauchet, Lindsey Perkin, Marko Petek, Monica Poelchau, Eric Record, Joseph Rinehart, Hugh Robertson, Andrew Rosendale, Victor Ruiz-Arroyo, Guy Smagghe, Zsofia Szendrei, Gregg W.C Thomas, Alex Torson, Iris Vargas Jentzsch, Matthew Weirauch, Ashley Yates, George Yocum, June-Sun Yoon, Stephen Richards, Sean Schoville, Martin Andersson, Mei-Ju Chen, Christopher Childers, Justin Clements, Markus Friedrich, Marcin Grynberg, Bernard Henrissat, Vincent Lombard, Alexander Ma, Lindsey Li, Marko Ma, Robert Robertson, Gregg W.C. Thomas, Matthew Ma, Richard Richards
Scientific Reports 8:1931 (2018)10.1038/s41598-018-20154-1
Analysis of carbohydrate-active enzymes in Thermogemmatispora sp. strain T81 reveals carbohydrate degradation ability
Atilio Tomazini, Sadhana Lal, Riffat Munir, Matthew Stott, Bernard Henrissat, Igor Polikarpov, Richard Sparling, David Levin
Canadian Journal of Microbiology 64:992-1003 (2018)10.1139/cjm-2018-0336
Identification of Dual Receptor Binding Protein Systems in Lactococcal 936 Group Phages
Stephen Hayes, Yoan Duhoo, Horst H. Neve, James Murphy, Jean-Paul Noben, Charles M. A. P. Franz, Christian Cambillau, Jennifer Mahony, Arjen Nauta, Douwe van Sinderen
Viruses 10:668 (2018)10.3390/v10120668
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
Yoann Seeleuthner, Samuel Mondy, Vincent Lombard, Quentin Carradec, Eric Pelletier, Marc Wessner, Jade Leconte, Jean-François Mangot, Julie Poulain, Karine Labadie, Ramiro Logares, Shinichi Sunagawa, Véronique de Berardinis, Marcel Salanoubat, Céline Dimier, Stefanie Kandels-Lewis, Marc Picheral, Sarah Searson, Stéphane Pesant, Nicole Poulton, Ramunas Stepanauskas, Peer Bork, Chris Bowler, Pascal Hingamp, Matthew B. Sullivan, Daniele Iudicone, Ramon Massana, Jean-Marc Aury, Bernard Henrissat, Eric Karsenti, Olivier Jaillon, Mike Sieracki, Colomban de Vargas, Patrick Wincker, Silvia G. Acinas, Emmanuel Boss, Michael Follows, Gabriel Gorsky, Nigel Grimsley, Lee Karp-Boss, Uros Krzic, Fabrice Not, Jeroen Raes, Emmanuel G. Reynaud, Christian Sardet, Sabrina Speich, Lars Stemmann, Jean Weissenbach, Didier Velayoudon
Nature Communications 9:310 (2018)10.1038/s41467-017-02235-3
Functional metagenomics identifies an exosialidase with an inverting catalytic mechanism that defines a new glycoside hydrolase family (GH156)
Léa Chuzel, Mehul Ganatra, Erdmann Rapp, Bernard Henrissat, Christopher Taron
Journal of Biological Chemistry 293:18138-18150 (2018)10.1074/jbc.RA118.003302
Ebola virus L protein harbors a new enzymatic activity involved in the internal methylation of RNAs
Baptiste Martin, Coralie Valle, Bruno Coutard, Bruno Canard, Françoise Debart, Etienne Decroly
Médecine/Sciences 34:919-921 (2018)10.1051/medsci/2018230
A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation
Alan Cartmell, Li Muñoz-Muñoz, Jonathon Briggs, Didier Ndeh, Elisabeth Lowe, Arnaud Basle, Nicolas Terrapon, Katherine Stott, Tiaan Heunis, Joe Gray, Li Yu, Paul P. Dupree, Pearl Fernandes, Sayali Shah, Spencer Williams, Aurore Labourel, Matthias Trost, Bernard Henrissat, Harry Gilbert, Jose Munoz-Munoz
Nature Microbiology 3:1314-1326 (2018)10.1038/s41564-018-0258-8
Biochemical and Structural Characterization of TesA, a Major Thioesterase Required for Outer-Envelope Lipid Biosynthesis in Mycobacterium tuberculosis
Phuong Chi Nguyen, van Son Nguyen, Benjamin Martin, Patrick Fourquet, Luc Camoin, Chistopher Spilling, Jean-François Cavalier, Christian Cambillau, Stéphane Canaan
Journal of Molecular Biology 430:5129-5136 (2018)10.1016/j.jmb.2018.09.017
Conformational response to charge clustering in synthetic intrinsically disordered proteins
Giulia Tedeschi, Edoardo Salladini, Carlo Santambrogio, Rita Grandori, Sonia Longhi, Stefania Brocca
Biochimica et Biophysica Acta (BBA) - General Subjects 1862:2204-2214 (2018)10.1016/j.bbagen.2018.07.011
The European Virus Archive goes global: A growing resource for research
J.L Romette, C. M. Prat, E. A. Gould, X. de Lamballerie, R. Charrel, B. Coutard, A. R. Fooks, M. Bardsley, M. Carroll, C. Drosten, J. F Drexler, S. Günther, B. Klempa, D. Pinschewer, T. Klimkait, T. Avsic-Zupanc, M. R. Capobianchi, A. Dicaro, G. Ippolito, A. Nitsche, M. Koopmans, C. Reusken, A. Gorbalenya, H. Raoul, H. Bourhy, T. Mettenleiter, S. Reiche, C. Batten, C. Sabeta, J. T. Paweska, M. Eropkin, V. Zverev, Z. Hu, S. Mac Cullough, A. Mirazimi, F. Pradel, P. Lieutaud
Antiviral Research 158:127-134 (2018)10.1016/j.antiviral.2018.07.017
Rapid Divergence of Genome Architectures Following the Origin of an Ectomycorrhizal Symbiosis in the Genus Amanita
Jaqueline Hess, Inger Skrede, Maryam Chaib de Mares, Matthieu Hainaut, Bernard Henrissat, Anne Pringle
Molecular Biology and Evolution 35:2786-2804 (2018)10.1093/molbev/msy179
Metagenomic Assembly and Prokaryotic Metagenome-Assembled Genome Sequences from the Northern Gulf of Mexico “Dead Zone”
J Cameron Thrash, Brett Baker, Kiley Seitz, Ben Temperton, Lauren Gillies Campbell, Nancy Rabalais, Bernard Henrissat, Olivia Mason, David Baltrus
Microbiology Resource Announcements 7:1-3 (2018)10.1128/MRA.01033-18
The methyltransferase domain of the Sudan ebolavirus L protein specifically targets internal adenosines of RNA substrates, in addition to the cap structure
Baptiste Martin, Bruno Coutard, Théo Guez, Guido Paesen, Bruno Canard, Françoise Debart, Jean-Jacques Vasseur, Jonathan Grimes, Etienne Decroly
Nucleic Acids Research 46:7902-7912 (2018)10.1093/nar/gky637
Folding Mechanism of the SH3 Domain from Grb2
Francesca Troilo, Daniela Bonetti, Carlo Camilloni, Angelo Toto, Sonia Longhi, Maurizio Brunori, Stefano Gianni
Journal of Physical Chemistry B 122:11166-11173 (2018)10.1021/acs.jpcb.8b06320
A gated relaxation oscillator mediated by FrzX controls morphogenetic movements in Myxococcus xanthus
Mathilde Guzzo, Seán Murray, Eugenie Martineau, Sebastien Lhospice, Gregory Baronian, Laetitia My, Yong Zhang, Leon Espinosa, Renaud Vincentelli, Benjamin Bratton, Joshua Shaevitz, Virginie Molle, Martin Howard, Tam Mignot
Nature Microbiology 3:948-959 (2018)10.1038/s41564-018-0203-x
Innate immunity evasion mechanisms of filoviruses
Baptiste Martin, Etienne Decroly
Med Sci (Paris) 34:671-677 (2018)10.1051/medsci/20183408013
Broad Genomic Sampling Reveals a Smut Pathogenic Ancestry of the Fungal Clade Ustilaginomycotina
Teeratas Kijpornyongpan, Stephen Mondo, Kerrie Barry, Laura Sandor, Juna Lee, Anna Lipzen, Jasmyn Pangilinan, Kurt Labutti, Matthieu Hainaut, Bernard Henrissat, Igor Grigoriev, Joseph Spatafora, M Catherine Aime, Fabia Ursula Battistuzzi
Molecular Biology and Evolution 35:1840-1854 (2018)10.1093/molbev/msy072
Production of α-1,3-L-arabinofuranosidase active on substituted xylan does not improve compost degradation by Agaricus bisporus
Aurin Vos, Edita Jurak, Peter de Gijsel, Robin Ohm, Bernard Henrissat, Luis Lugones, Mirjam Kabel, Han Wösten
PLoS ONE 13:e0201090 (2018)10.1371/journal.pone.0201090
The gp27-like Hub of VgrG Serves as Adaptor to Promote Hcp Tube Assembly
Melvin G Renault, Jordi Zamarreño Beas, Badreddine Douzi, Maïalène Chabalier, Abdelrahim Zoued, Yannick R Brunet, Christian Cambillau, Laure Journet, E. Cascales
Journal of Molecular Biology 430:3143-3156 (2018)10.1016/j.jmb.2018.07.018
Genetic and enzymatic characterization of 3-O-sulfotransferase SNPs associated with Plasmodium falciparum parasitaemia
Ngoc Thy Nguyen, Romain R Vivès, Magali Iché-Torres, Vincent Delauzun, Els Saesen, Veronique Roig-Zamboni, Hugues Lortat-Jacob, Pascal Rihet, Yves Bourne
Glycobiology 28:534-541 (2018)10.1093/glycob/cwy038
A Vaccine Platform against Arenaviruses Based on a Recombinant Hyperattenuated Mopeia Virus Expressing Heterologous Glycoproteins
Xavier Carnec, Mathieu Mateo, Audrey Page, Stéphanie Reynard, Jimmy Hortion, Caroline Picard, Elsie Yekwa, Laura Barrot, Stéphane Barron, Audrey Vallve, Hervé Raoul, Caroline Carbonnelle, Francois Ferron, Sylvain Baize
Journal of Virology 92:e02230-17 (2018)10.1128/JVI.02230-17
Expression, Biochemistry, and Stabilization with Camel Antibodies of Membrane Proteins: Case Study of the Mouse 5-HT3 Receptor.
Ghérici Hassaine, Cédric Deluz, Luigino Grasso, Romain Wyss, Ruud Hovius, Henning Stahlberg, Takashi Li, Aline Desmyter, Christophe J Moreau, Lucie Peclinovska, Sonja Minniberger, Lamia Mebarki, Xiao-Dan Li, Horst Vogel, Hugues Nury
Methods in Molecular Biology 139-168 (2018)10.1007/978-1-4939-7151-0_8
Talaromyces borbonicus , sp. nov., a novel fungus from biodegraded Arundo donax with potential abilities in lignocellulose conversion
Simona Varriale, Jos Houbraken, Zoraide Granchi, Olimpia Pepe, Gabriella Cerullo, Valeria Ventorino, Thomas Chin-A-Woeng, Martin Meijer, Robert Riley, Igor Grigoriev, Bernard Henrissat, Ronald de Vries, Vincenza Faraco
Mycologia 110:316-324 (2018)10.1080/00275514.2018.1456835
A Decade of Streptococcus thermophilus Phage Evolution in an Irish Dairy Plant
Katherine Lavelle, James Murphy, Brian Fitzgerald, Gabriele Lugli, Aldert Zomer, Horst H. Neve, Marco Ventura, Charles M. A. P. Franz, Christian Cambillau, Douwe van Sinderen, Jennifer Mahony
Applied and Environmental Microbiology 84 (2018)10.1128/AEM.02855-17
Characterization of epitope specificities of reference antibodies used for the quantification of the birch pollen allergen Bet v 1
S. Brier, M. Le Mignon, K. Jain, C. Lebrun, F. Peurois, C. Kellenberger, V. Bordas-Le Floch, L. Mascarell, E. Nony, P. Moingeon
Allergy 73:1032-1040 (2018)10.1111/all.13364
Glycosyltransferase genes that cause monogenic congenital disorders of glycosylation are distinct from glycosyltransferase genes associated with complex diseases
Hiren Joshi, Lars Hansen, Yoshiki Narimatsu, Hudson Freeze, Bernard Henrissat, Eric Bennett, Hans Wandall, Henrik Clausen, Katrine Schjoldager
Glycobiology 28:284-294 (2018)10.1093/glycob/cwy015
Exploration of nucleoprotein α-MoRE and XD interactions of Nipah and Hendra viruses
Xu Xu, Wenting Chu, Xiakun Chu, Liufang Xu, Sonia Longhi, Jin Wang, Xu Shang
Journal of Molecular Modeling 24:113 (2018)10.1007/s00894-018-3643-6
Hijacking DNA methyltransferase transition state analogues to produce chemical scaffolds for PRMT inhibitors
Ludovic Halby, Nils Marechal, Dany Pechalrieu, Vincent Cura, Don-Marc Franchini, Céline Faux, Frédéric Alby, Nathalie Troffer-Charlier, Srikanth Kudithipudi, Albert Jeltsch, Wahiba Aouadi, Etienne Decroly, Jean-Claude Guillemot, Patrick Page, Clotilde Ferroud, Luc Bonnefond, Dominique Guianvarc'H, Jean Cavarelli, Paola Arimondo
Philosophical Transactions of the Royal Society B: Biological Sciences 373:20170072 (2018)10.1098/rstb.2017.0072
Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
Irina Druzhinina, Komal Chenthamara, Jian Zhang, Lea Atanasova, Dongqing Yang, Youzhi Miao, Mohammad Rahimi, Marica Grujic, Feng Cai, Shadi Pourmehdi, Kamariah Abu Salim, Carina Pretzer, Alexey Kopchinskiy, Bernard Henrissat, Alan Kuo, Hope Hundley, Mei Wang, Andrea A. Aerts, Asaf Salamov, Anna Lipzen, Kurt Labutti, Kerrie Barry, Igor Grigoriev, Qirong Shen, Christian Kubicek
PLoS Genetics 14:e1007322 (2018)10.1371/journal.pgen.1007322
Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga
Miia Mäkelä, Mao Peng, Zoraide Granchi, Thomas Chin-A-Woeng, Rosa Hegi, Sake van Pelt, Steven Ahrendt, Robert Riley, Matthieu Hainaut, Bernard Henrissat, Igor Grigoriev, Ronald de Vries, Kristiina Hildén
Genome Announcements 6:1414-1431 (2018)10.1128/genomeA.01414-17
How Robust Is the Mechanism of Folding-Upon-Binding for an Intrinsically Disordered Protein?
Daniela Bonetti, Francesca Troilo, Maurizio Brunori, Sonia Longhi, Stefano Gianni
Biophysical Journal 114:1889-1894 (2018)10.1016/j.bpj.2018.03.017
Towards a complete structural deciphering of Type VI secretion system
van Son Nguyen, Badreddine Douzi, Eric Durand, Alain Roussel, E. Cascales, Christian Cambillau
Current Opinion in Structural Biology 49:77-84 (2018)10.1016/j.sbi.2018.01.007
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
Rekha Seshadri, Sinead Leahy, Graeme Attwood, Koon Hoong Teh, Suzanne Lambie, Adrian Cookson, Emiley Eloe-Fadrosh, Georgios Pavlopoulos, Michalis Hadjithomas, Neha Varghese, David Páez-Espino, Rechelle Perry, Gemma Henderson, Christopher J. Creevey, Nicolas Terrapon, Pascal Lapébie, Elodie Drula, Vincent Lombard, Edward M. Rubin, Nikos Kyrpides, Bernard Henrissat, Tanja Woyke, Natalia Ivanova, William Kelly, Nikola Palevich, Peter Janssen, Ron Ronimus, Samantha Noel, Priya Soni, Kerri Reilly, Todd Atherly, Cherie Ziemer, Andre-Denis Wright, Suzanne Ishaq, Michael Cotta, Stephanie Thompson, Katie Crosley, Nest Mckain, R John Wallace, Harry Flint, Jennifer Martin, Robert Forster, Robert Gruninger, Tim Mcallister, Rosalind Gilbert, Diane Ouwerkerk, Athol Klieve, Rafat Al Jassim, Stuart Denman, Chris Mcsweeney, Carly Rosewarne, Satoshi Koike, Yasuo Kobayashi, Makoto Mitsumori, Takumi Shinkai, Silvio Cravero, María Cerón Cucchi, Chris Creevey
Nature Biotechnology 36:359-367 (2018)10.1038/nbt.4110
Crystal structures of Lymphocytic choriomeningitis virus endonuclease domain complexed with diketo-acid ligands
Magali Saez-Ayala, Elsie Laban Yekwa, Mauro Carcelli, Bruno Canard, Karine Alvarez, Francois Ferron
International Union of Crystallography journal 5:223-235 (2018)10.1107/S2052252518001021
Identification of Euglena gracilis β-1,3-glucan phosphorylase and establishment of a new glycoside hydrolase (GH) family GH149
Sakonwan Kuhaudomlarp, Nicola Patron, Bernard Henrissat, Martin Rejzek, Gerhard Saalbach, Robert W. Field
Journal of Biological Chemistry 293:2865-2876 (2018)10.1074/jbc.RA117.000936
Crystal structures ofLymphocytic choriomeningitis virusendonuclease domain complexed with diketo-acid ligands
Magali Saez-Ayala, Elsie Yekwa, Mauro Carcelli, Bruno Canard, Karine Alvarez, Francois Ferron
International Union of Crystallography journal 5:223-235 (2018)10.1107/s2052252518001021
Type IX secretion system PorM and gliding machinery GldM form extended arches spanning the periplasmic space
Philippe Leone, Jennifer Roche, Maxence S Vincent, Quang Hieu Tran, Aline Desmyter, E. Cascales, Christine Kellenberger, Christian Cambillau, Alain Roussel
Nature Communications 9 (2018)10.1038/s41467-017-02784-7
The ectomycorrhizal basidiomycete Laccaria bicolor releases a secreted β-1,4 endoglucanase that plays a key role in symbiosis development
Feng Zhang, George Anasontzis, Aurore Labourel, Charlotte Champion, Mireille Haon, Minna Kemppainen, Carine Commun, Alejandro Pardo, Claire Veneault-Fourrey, Annegret Kohler, Marie-Noelle Rosso, Bernard Henrissat, Jean-Guy Berrin, Francis Martin
New Phytologist 220:1309-1321 (2018)10.1111/nph.15113
Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides
Ana R Luis, Jonathon Briggs, Xiaoyang Zhang, Benjamin Farnell, Didier Ndeh, Aurore Labourel, Arnaud Basle, Alan Cartmell, Nicolas Terrapon, Katherine Stott, Elisabeth Lowe, Richard Mclean, Kaitlyn Shearer, Julia Schuckel, Immacolata Venditto, Marie-Christine Ralet, Bernard Henrissat, Eric Martens, Steven Mosimann, D Wade Abbott, Harry Gilbert, D. Wade Abbott
Nature Microbiology 3:210-219 (2018)10.1038/s41564-017-0079-1
Structural and Functional Basis of the Fidelity of Nucleotide Selection by Flavivirus RNA-Dependent RNA Polymerases
Barbara Selisko, Nicolas Papageorgiou, Francois Ferron, Bruno Canard
Viruses 10:59 (2018)10.3390/v10020059
Filovirus proteins for antiviral drug discovery: Structure/function of proteins involved in assembly and budding
Baptiste Martin, Olivier Reynard, Viktor Volchkov, Etienne Decroly
Antiviral Research 150:183-192 (2018)10.1016/j.antiviral.2017.12.022
Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists
Elena Martino, Emmanuelle Morin, Gwen-Aëlle Grelet, Alan Kuo, Annegret Kohler, Stefania Daghino, Kerrie Barry, Nicolas Cichocki, Alicia Clum, Rhyan Dockter, Matthieu Hainaut, Rita Kuo, Kurt Labutti, Björn Lindahl, Erika Lindquist, Anna Lipzen, Hassine-Radhouane Khouja, Jon Magnuson, Claude Murat, Robin Ohm, Steven Singer, Joseph Spatafora, Mei Wang, Claire Veneault-Fourrey, Bernard Henrissat, Igor Grigoriev, Francis Martin, Silvia Perotto
New Phytologist 217:1213-1229 (2018)10.1111/nph.14974
Structure–Function Analysis of the C-Terminal Domain of the Type VI Secretion TssB Tail Sheath Subunit
Badreddine Douzi, Laureen Logger, Silvia Spinelli, Stephanie Blangy, Christian Cambillau, E. Cascales
Journal of Molecular Biology 430:297-309 (2018)10.1016/j.jmb.2017.11.015
Lytic xylan oxidases from wood-decay fungi unlock biomass degradation
Marie Couturier, Simon Ladeveze, Gerlind Sulzenbacher, Luisa Ciano, Mathieu Fanuel, Céline Moreau, Ana Villares, Bernard Cathala, Florence Chaspoul, Kristian Frandsen, Aurore Labourel, Isabelle Gimbert Herpoël-Gimbert, Sacha Grisel, Mireille Haon, Nicolas Lenfant, Hélène Rogniaux, David Ropartz, Gideon Davies, Marie-Noelle Rosso, Paul Walton, Bernard Henrissat, Jean-Guy Berrin
Nature Chemical Biology 14:306-310 (2018)10.1038/nchembio.2558
Exploiting the S4–S5 Specificity of Human Neutrophil Proteinase 3 to Improve the Potency of Peptidyl Di(chlorophenyl)-phosphonate Ester Inhibitors: A Kinetic and Molecular Modeling Analysis
Carla Guarino, Natalia Gruba, Renata Grzywa, Edyta Dyguda-Kazimierowicz, Yveline Hamon, Monika Łȩgowska, Marcin Skoreński, Sandrine Dallet-Choisy, Adam Marchand-Adam, Christine Kellenberger, Dieter Jenne, Marcin Sieńczyk, Adam Lesner, Francis Gauthier, Brice Korkmaz
Journal of Medicinal Chemistry 61:1858-1870 (2018)10.1021/acs.jmedchem.7b01416
Synthesis and substrate properties towards HIV-1 reverse transcriptase of new diphosphate analogues of 9-[(2-phosphonomethoxy)ethyl]adenine
Wolfgang Hg Laux, Stephane Priet, Karine Alvarez, Suzanne Peyrottes, Christian Perigaud
Antiviral Chemistry and Chemotherapy 26:204020661875763 (2018)10.1177/2040206618757636
Structural and molecular basis of mismatch correction and ribavirin excision from coronavirus RNA
Francois Ferron, Lorenzo Subissi, Ana Theresa Silveira de Morais, Nhung Thi Tuyet Le, Marion Sevajol, Laure Gluais, Etienne Decroly, Clemens Vonrhein, Gérard Bricogne, Bruno Canard, Isabelle Imbert
Proceedings of the National Academy of Sciences of the United States of America 115:E162-E171 (2018)10.1073/pnas.1718806115
PULDB: the expanded database of Polysaccharide Utilization Loci
Nicolas Terrapon, Vincent Lombard, Elodie Drula, Pascal Lapébie, Saad Al-Masaudi, Harry Gilbert, Bernard Henrissat
Nucleic Acids Research 46:D677-D683 (2018)10.1093/nar/gkx1022
Hot Spots for Protein Partnerships at the Surface of Cholinesterases and Related α/β Hydrolase Fold Proteins or Domains—A Structural Perspective
Yves Bourne, Pascale Marchot
Molecules 23 (2018)10.3390/molecules23010035
Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass
Shingo Miyauchi, Anaïs Rancon, Elodie Drula, Hayat Hage, Delphine Chaduli, Anne Favel, Sacha Grisel, Bernard Henrissat, Isabelle Herpoel-Gimbert, Francisco J. Ruiz-Duenas, Didier Chevret, Matthieu Hainaut, Junyan Lin, Mei Wang, Jasmyn Pangilinan, Anna Lipzen, Laurence Lesage-Meessen, David Navarro, Robert Riley, Igor V. Grigoriev, Simeng Zhou, Sana Raouche, Marie-Noelle Rosso
Biotechnology for Biofuels 11:np (2018)10.1186/s13068-018-1198-5
Structural Dynamics and Catalytic Properties of a Multimodular Xanthanase
Olga V. Moroz, Pernille F. Jensen, Sean P. Mcdonald, Nicholas Mcgregor, Elena Blagova, Gerard Comamala, Dorotea R. Seura, Lars Anderson, Santhosh M. Vasu, Vasudeva P. Rao, Lars Giger, Trine Hoist Sorensen, Rune Nygaard Monrad, Allan Svendsen, Jens Nielsen, Bernard Henrissat, Gideon Davies, Harry Brumer, Kasper D. Rand, Keith S. Wilson
ACS Catalysis 8:6021-6034 (2018)10.1021/acscatal.8b00666
Comparative analysis of basidiomycete transcriptomes reveals a core set of expressed genes encoding plant biomass degrading enzymes
Mao Peng, Maria Victoria Aguilar-Pontes, Matthieu Hainaut, Bernard Henrissat, Kristiina Hildén, Miia R. Makela, Ronald P. de Vries
Fungal Genetics and Biology 112:40-46 (2018)10.1016/j.fgb.2017.08.001
InSiDDe: A Server for Designing Artificial Disordered Proteins
Antoine Schramm, Philippe Lieutaud, Stefano Gianni, Sonia Longhi, Christophe Bignon
International Journal of Molecular Sciences 19:e91 (2018)10.3390/ijms19010091
The human gut microbe Bacteroides thetaiotaomicron encodes the founding member of a novel glycosaminoglycan-degrading polysaccharide lyase family PL29
Didier Ndeh, Jose Munoz Munoz, Alan Cartmell, David Bulmer, Corinne Wills, Bernard Henrissat, Joseph Gray
Journal of Biological Chemistry 293:17906-17916 (2018)10.1074/jbc.RA118.004510
Exploring intrinsically disordered proteins in Chlamydomonas reinhardtii
Yizhi Zhang, Hélène Launay, Antoine Schramm, Régine Lebrun, Brigitte Gontero
Scientific Reports 8:6805 (2018)10.1038/s41598-018-24772-7
Novel carbohydrate binding modules in the surface anchored α-amylase of Eubacterium rectale provide a molecular rationale for the range of starches used by this organism in the human gut
Darrell Cockburn, Carolyn Suh, Krizia Perez Medina, Rebecca Duvall, Zdzislaw Wawrzak, Bernard Henrissat, Nicole Koropatkin
Molecular Microbiology 107:249-264 (2018)10.1111/mmi.13881
High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis
Eric C H Chen, Emmanuelle Morin, Denis Beaudet, Jessica Noel, Gokalp Yildirir, Steve Ndikumana, Philippe Charron, Camille St-Onge, John Giorgi, Manuela Krüger, Timea Marton, Jeanne Ropars, Igor V. Grigoriev, Matthieu Hainaut, Bernard Henrissat, Christophe Roux, Francis Martin, Nicolas Corradi
New Phytologist 220:1161-1171 (2018)10.1111/nph.14989
Glycosylate and move! The glycosyltransferase Maf is involved in bacterial flagella formation
Gerlind Sulzenbacher, Veronique Roig-Zamboni, Régine Lebrun, Yann Guérardel, Dorothée Murat, Pascal Mansuelle, Nao Yamakawa, Xin-Xin Qian, Renaud Vincentelli, Yves Bourne, Long-Fei Wu, François Alberto
Environmental Microbiology 20:228-240 (2018)10.1111/1462-2920.13975
Haiku: New paradigm for the reverse genetics of emerging RNA viruses
Therese Atieh, Miriam Diala El Ayoubi, Fabien Aubry, Stephane Priet, Xavier De Lamballerie, Antoine Nougairede
PLoS ONE 13 (2018)10.1371/journal.pone.0193069
Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes
Wade Abbott, Orly Alber, Ed Bayer, Jean-Guy Berrin, Alisdair Boraston, Harry Brumer, Ryszard Brzezinski, Anthony Clarke, Beatrice Cobucci-Ponzano, Darrell Cockburn, Pedro Coutinho, Mirjam Czjzek, Bareket Dassa, Gideon John Davies, Vincent Eijsink, Jens Eklof, Alfons Felice, Elizabeth Ficko-Blean, Geoff Pincher, Thierry Fontaine, Zui Fujimoto, Kiyotaka Fujita, Shinya Fushinobu, Harry Gilbert, Tracey Gloster, Ethan Goddard-Borger, Ian Greig, Jan-Hendrik Hehemann, Glyn Hemsworth, Bernard Henrissat, Masafumi Hidaka, Ramon Hurtado-Guerrero, Kiyohiko Igarashi, Takuya Ishida, Stefan Janecek, Seino Jongkees, Nathalie Juge, Satoshi Kaneko, Takane Katayama, Motomitsu Kitaoka, Naotake Konno, Daniel Kracher, Anna Kulminskaya, Alicia Lammerts van Bueren, Sine Larsen, Junho Lee, Markus Linder, Leila Loleggio, Roland Ludwig, Ana Luis, Mirko Maksimainen, Brian Mark, Richard Mclean, Gurvan Michel, Cédric Montanier, Marco Moracci, Haruhide Mori, Hiroyuki Nakai, Wim Nerinckx, Takayuki Ohnuma, Richard Pickersgill, Kathleen Piens, Tirso Pons, Etienne Rebuffet, Peter Reilly, Magali Remaud Simeon, Brian Rempel, Kyle Robinson, David Rose, Juha Rouvinen, Wataru Saburi, Yuichi Sakamoto, Mats Sandgren, Fathima Shaikh, Yuval Shoham, Franz St John, Jerry Stahlberg, Michael Suits, Gerlind Sulzenbacher, Tomomi Sumida, Ryuichiro Suzuki, Birte Svensson, Toki Taira, Ed Taylor, Takashi Tonozuka, Breeanna Urbanowicz, Gustav Vaaje-Kolstad, Wim van den Ende, Annabelle Varrot, Maxime Versluys, Florence Vincent, David Vocadlo, Warren Wakarchuk, Tom Wennekes, Rohan Williams, Spencer Williams, David Wilson, Stephen Withers, Katsuro Yaoi, Vivian Yip, Ran Zhang
Glycobiology 28:3-8 (2018)10.1093/glycob/cwx089
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle
Claude Murat, Thibaut Payen, Benjamin Noël, Alan Kuo, Emmanuelle Morin, Juan Chen, Annegret Kohler, Krisztina Krizsán, Raffaella Balestrini, Corinne da Silva, Barbara Montanini, Matthieu Hainaut, Elisabetta Levati, Kerrie Barry, Beatrice Belfiori, Nicolas Cichocki, Alicia Clum, Rhyan Dockter, Laure Fauchery, Julie Guy, Mirco Iotti, François F. Le Tacon, Erika Lindquist, Anna Lipzen, Fabienne Malagnac, Antonietta Mello, Virginie Molinier, Shingo Miyauchi, Julie Poulain, Claudia Riccioni, Andrea Rubini, Yaron Sitrit, Richard Splivallo, Stefanie S. Traeger, Mei Wang, Daniel Wipf, Alessandra Zambonelli, Francesco Paolocci, Minou Nowrousian, Simone Ottonello, Petr Baldrian, Joseph Spatafora, Bernard Henrissat, Laszlo Nagy, Jean-Marc Aury, Patrick Wincker, Igor Grigoriev, Paola Bonfante, Francis Martin
Nature Ecology & Evolution 2:1956-1965 (2018)10.1038/s41559-018-0710-4
How Robust Is the Mechanism of Folding-Upon-Binding for an Intrinsically Disordered Protein?
Daniela Bonetti, Francesca Troilo, Maurizio Brunori, Sonia Longhi, Stefano Gianni
Biophysical Journal 114:1889-1894 (2018)10.1016/j.bpj.2018.03.017
How to Control HTLV-1-Associated Diseases: Preventing de Novo Cellular Infection Using Antiviral Therapy
Amandine Pasquier, Sandrine Alais, Loic Roux, Marie-Isabelle Thoulouze, Karine Alvarez, Chloé Journo, Hélène Dutartre, Renaud Mahieux
Frontiers in Microbiology 9:278 (2018)10.3389/fmicb.2018.00278
ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets
Matija Brozovic, Christelle Dantec, Justine Dardaillon, Delphine Dauga, Emmanuel Faure, Mathieu Gineste, Alexandra Louis, Magali Naville, Kazuhiro R. Nitta, Jacques Piette, Wendy Reeves, Celine Scornavacca, Paul Simion, Renaud Vincentelli, Maëlle Bellec, Sameh Ben Aicha, Marie Fagotto, Marion Gueroult-Bellone, Maximilian Haeussler, Edwin Jacox, Elijah K. Lowe, Mickaël Mendez, Alexis Roberge, Alberto Stolfi, Rui Yokomori, C. Titus Brown, Christian Cambillau, Lionel Christiaen, Frédéric Delsuc, Emmanuel J.P. Douzery, Rémi Dumollard, Takehiro Kusakabe, Kenta Nakai, Hiroki Nishida, Yutaka Satou, Billie Swalla, Michael Veeman, Jean-Nicolas Volff, Patrick Lemaire
Nucleic Acids Research 46:D718-D725 (2018)10.1093/nar/gkx1108
