Pedro M Coutinho
Professor
Research group: Glycogenomics
Publications
2022
A sufficient condition to design unknown input observers for nonlinear systems with arbitrary relative degree
Pedro Coutinho, Iury Bessa, Wen‐bo Xie, Tran Anh-Tu Nguyen, Reinaldo Martínez Palhares
International Journal of Robust and Nonlinear Control 32:8331-8348 (2022)10.1002/rnc.6273
2021
Lignin from oil palm empty fruit bunches: Characterization, biological activities and application in green synthesis of silver nanoparticles
Luis Alberto Zevallos Torres, Adenise Lorenci Wociciechowski, Valcineide Oliveira de Andrade Tanobe, Arion Zandoná Filho, Rilton Alves de Freitas, Miguel Daniel Noseda, Erico Saito Szameitat, Craig Faulds, Pedro Coutinho, Emanuel Bertrand, Carlos Ricardo Soccol
International Journal of Biological Macromolecules (2021)10.1016/j.ijbiomac.2020.11.104
2020
Constrained Output-Feedback Control for Discrete-Time Fuzzy Systems With Local Nonlinear Models Subject to State and Input Constraints
Tran Anh-Tu Nguyen, Pedro Coutinho, Thierry-Marie Guerra, Reinaldo Martinez Palhares, Jun-Tao Pan
IEEE Transactions on Cybernetics 51:4673-4684 (2020)10.1109/TCYB.2020.3009128
2019
Intrinsic dynamic behavior of enzyme:substrate complexes govern the catalytic action of β-galactosidases across clan GH-A
Rajender Kumar, Bernard Henrissat, Pedro Coutinho
Scientific Reports 9:10346 (2019)10.1038/s41598-019-46589-8
Tracking of enzymatic biomass deconstruction by fungal secretomes highlights markers of lignocellulose recalcitrance
Gabriel Paës, David Navarro, Yves Benoit, Senta Blanquet, Brigitte Chabbert, Bernard Chaussepied, Pedro Coutinho, Sylvie Durand, Igor Grigoriev, Marie-Noelle Rosso, Laurent Heux, Charlène Launay, Mireille Haon, Antoine Margeot, Yoshiharu Nishiyama, Sana Raouche, Marie-Noëlle Rosso, Estelle Bonnin, Jean-Guy Berrin
Biotechnology for Biofuels 12 (2019)10.1186/s13068-019-1417-8
2018
Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes
Wade Abbott, Orly Alber, Ed Bayer, Jean-Guy Berrin, Alisdair Boraston, Harry Brumer, Ryszard Brzezinski, Anthony Clarke, Beatrice Cobucci-Ponzano, Darrell Cockburn, Pedro Coutinho, Mirjam Czjzek, Bareket Dassa, Gideon John Davies, Vincent Eijsink, Jens Eklof, Alfons Felice, Elizabeth Ficko-Blean, Geoff Pincher, Thierry Fontaine, Zui Fujimoto, Kiyotaka Fujita, Shinya Fushinobu, Harry Gilbert, Tracey Gloster, Ethan Goddard-Borger, Ian Greig, Jan-Hendrik Hehemann, Glyn Hemsworth, Bernard Henrissat, Masafumi Hidaka, Ramon Hurtado-Guerrero, Kiyohiko Igarashi, Takuya Ishida, Stefan Janecek, Seino Jongkees, Nathalie Juge, Satoshi Kaneko, Takane Katayama, Motomitsu Kitaoka, Naotake Konno, Daniel Kracher, Anna Kulminskaya, Alicia Lammerts van Bueren, Sine Larsen, Junho Lee, Markus Linder, Leila Loleggio, Roland Ludwig, Ana Luis, Mirko Maksimainen, Brian Mark, Richard Mclean, Gurvan Michel, Cédric Montanier, Marco Moracci, Haruhide Mori, Hiroyuki Nakai, Wim Nerinckx, Takayuki Ohnuma, Richard Pickersgill, Kathleen Piens, Tirso Pons, Etienne Rebuffet, Peter Reilly, Magali Remaud Simeon, Brian Rempel, Kyle Robinson, David Rose, Juha Rouvinen, Wataru Saburi, Yuichi Sakamoto, Mats Sandgren, Fathima Shaikh, Yuval Shoham, Franz St John, Jerry Stahlberg, Michael Suits, Gerlind Sulzenbacher, Tomomi Sumida, Ryuichiro Suzuki, Birte Svensson, Toki Taira, Ed Taylor, Takashi Tonozuka, Breeanna Urbanowicz, Gustav Vaaje-Kolstad, Wim van den Ende, Annabelle Varrot, Maxime Versluys, Florence Vincent, David Vocadlo, Warren Wakarchuk, Tom Wennekes, Rohan Williams, Spencer Williams, David Wilson, Stephen Withers, Katsuro Yaoi, Vivian Yip, Ran Zhang
Glycobiology 28:3-8 (2018)10.1093/glycob/cwx089
2014
A Novel Unsaturated β-Glucuronyl Hydrolase Involved in Ulvan Degradation Unveils the Versatility of Stereochemistry Requirements in Family GH105
Pi Nyvall Collen, Alexandra Jeudy, Jean-Francois Sassi, Agnès Groisillier, Mirjam Czjzek, Pedro Coutinho, William Helbert
Journal of Biological Chemistry 289:6199-6211 (2014)10.1074/jbc.M113.537480
The carbohydrate-active enzymes database (CAZy) in 2013
Bernard Henrissat, Vincent Lombard, Elodie Drula, Pedro Coutinho, Hemalatha Golaconda Ramulu
Nucleic Acids Research 42:D490-D495 (2014)10.1093/nar/gkt1178
Rumen cellulosomics: divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains
Bareket Dassa, Ilya Borovok, Vered Ruimy-Israeli, Raphael Lamed, Harry J Flint, Sylvia H Duncan, Bernard Henrissat, Pedro Coutinho, Mark Morrison, Pascale Mosoni, Carl J Yeoman, Bryan A White, Edward A Bayer
PLoS ONE 9:e99221 (2014)10.1371/journal.pone.0099221
Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment
Claire Veneault-Fourrey, Carine Commun, Annegret Kohler, Emmanuelle Morin, Raffaella Balestrini, Jonathan Michael Plett, Etienne Danchin, Pedro Coutinho, Ad Wiebenga, Ronald P de Vries, Bernard Henrissat, Francis Martin
Fungal Genetics and Biology 72:168-181 (2014)10.1016/j.fgb.2014.08.007
2012
Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants.
Maria Cecilia Arias, Etienne G J Danchin, Pedro Coutinho, Bernard Henrissat, Steven Ball
Mobile Genetic Elements 2:81-87 (2012)10.4161/mge.20375
2011
Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.
Christian Kubicek, Alfredo Herrera-Estrella, Verena Seidl-Seiboth, Diego Martinez, Irina Druzhinina, Michael Thon, Susanne Zeilinger, Sergio Casas-Flores, Benjamin Horwitz, Prasun Mukherjee, Mala Mukherjee, László Kredics, Luis Alcaraz, Andrea A. Aerts, Zsuzsanna Antal, Lea Atanasova, Mayte Cervantes-Badillo, Jean Challacombe, Olga Chertkov, Kevin Mccluskey, Fanny Coulpier, Nandan Deshpande, Hans von Döhren, Daniel Ebbole, Edgardo Esquivel-Naranjo, Erzsébet Fekete, Michel Flipphi, Fabian Glaser, Elida Gómez-Rodríguez, Sabine Gruber, Cliff Han, Bernard Henrissat, Rosa Hermosa, Miguel Hernández-Oñate, Levente Karaffa, Idit Kosti, Stéphane Le Crom, Erika Lindquist, Susan Lucas, Mette Lübeck, Peter Lübeck, Antoine Margeot, Benjamin Metz, Monica Misra, Helena Nevalainen, Markus Omann, Nicolle Packer, Giancarlo Perrone, Edith Uresti-Rivera, Asaf Salamov, Monika Schmoll, Bernhard Seiboth, Harris Shapiro, Serenella Sukno, Juan Antonio Tamayo-Ramos, Doris Tisch, Aric Wiest, Heather Wilkinson, Michael Zhang, Pedro Coutinho, Charles Kenerley, Scott Baker, Igor Grigoriev
Genome Biology 12:R40 (2011)10.1186/gb-2011-12-4-r40
2010
Genome sequence of the model mushroom Schizophyllum commune
Robin Ohm, Jan de Jong, Luis Lugones, Andrea Aerts, Erika Kothe, Jason Stajich, Ronald de Vries, Eric Record, Anthony Levasseur, Scott Baker, Kirk Bartholomew, Pedro Coutinho, Susann Erdmann, Thomas Fowler, Allen Gathman, Vincent Lombard, Bernard Henrissat, Nicole Knabe, Ursula Kües, Walt Lilly, Erika Lindquist, Susan Lucas, Jon Magnuson, François Piumi, Marjatta Raudaskoski, Asaf Salamov, Jeremy Schmutz, Francis Schwarze, Patricia Vankuyk, J Stephen Horton, Igor Grigoriev, Han Wösten
Nature Biotechnology 28:957-963 (2010)10.1038/nbt.1643
2009
The 2008 update of the Aspergillus nidulans genome annotation: a community effort.
Jennifer Russo Wortman, Jane Mabey Gilsenan, Vinita Joardar, Jennifer Deegan, John Clutterbuck, Mikael R Andersen, David Archer, Mojca Bencina, Gerhard Braus, Pedro Coutinho, Hans von Döhren, John Doonan, Arnold J M Driessen, Pawel Durek, Eduardo Espeso, Erzsébet Fekete, Michel Flipphi, Carlos Garcia Estrada, Steven Geysens, Gustavo Goldman, Piet W J de Groot, Kim Hansen, Steven D Harris, Thorsten Heinekamp, Kerstin Helmstaedt, Bernard Henrissat, Gerald Hofmann, Tim Homan, Tetsuya Horio, Hiroyuki Horiuchi, Steve James, Meriel Jones, Levente Karaffa, Zsolt Karányi, Masashi Kato, Nancy Keller, Diane E Kelly, Jan a K W Kiel, Jung-Mi Kim, Ida J van Der Klei, Frans M Klis, Andriy Kovalchuk, Nada Krasevec, Christian P Kubicek, Bo Liu, Andrew Maccabe, Vera Meyer, Pete Mirabito, Márton Miskei, Magdalena Mos, Jonathan Mullins, David R Nelson, Jens Nielsen, Berl R Oakley, Stephen A Osmani, Tiina Pakula, Andrzej Paszewski, Ian T. Paulsen, Sebastian Pilsyk, István Pócsi, Peter J Punt, Arthur F J Ram, Qinghu Ren, Xavier Robellet, Geoff Robson, Bernhard Seiboth, Piet van Solingen, Thomas Specht, Jibin Sun, Naimeh Taheri-Talesh, Norio Takeshita, Dave Ussery, Patricia A Vankuyk, Hans Visser, Peter J I van de Vondervoort, Ronald P de Vries, Jonathan Walton, Xin Xiang, Yi Xiong, an Ping Zeng, Bernd W Brandt, Michael J Cornell, Cees a M J J van den Hondel, Jacob Visser, Stephen G Oliver, Geoffrey Turner
Fungal Genetics and Biology 46 Suppl 1:S2-13 (2009)10.1016/j.fgb.2008.12.003
2008
Complete Genome Sequence of the Complex Carbohydrate-Degrading Marine Bacterium, Saccharophagus degradans Strain 2-40T
Ronald Weiner, Larry Taylor, Bernard Henrissat, Loren Hauser, Miriam Land, Pedro Coutinho, Corinne Rancurel, Elizabeth Saunders, Atkinson Longmire, Haitao Zhang, Edward Bayer, Harry Gilbert, Frank Larimer, Igor Zhulin, Nathan Ekborg, Raphael Lamed, Paul Richardson, Ilya Borovok, Steven Hutcheson
PLoS Genetics 4:e1000087 (2008)10.1371/journal.pgen.1000087
The genome sequence of the model ascomycete fungus Podospora anserina.
Eric Espagne, Olivier Lespinet, Fabienne Malagnac, Corinne da Silva, Olivier Jaillon, Betina Porcel, Arnaud Couloux, Jean-Marc Aury, Béatrice Ségurens, Julie Poulain, Véronique Anthouard, Sandrine Grossetete, Hamid Khalili, Evelyne Coppin, Michelle Déquard-Chablat, Marguerite Picard, Véronique Contamine, Sylvie Arnaise, Anne Bourdais, Véronique Berteaux-Lecellier, Daniel Gautheret, Ronald de Vries, Evy Battaglia, Pedro Coutinho, Etienne G. J. Danchin, Bernard Henrissat, Riyad Khoury, Annie Sainsard-Chanet, Antoine Boivin, Bérangère Pinan-Lucarré, Carole Sellem, Robert Debuchy, Patrick Wincker, Jean Weissenbach, Philippe Silar
Genome Biology 9:R77 (2008)10.1186/gb-2008-9-5-r77
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)
Diego Martínez, Randy Berka, Bernard Henrissat, Markku Saloheimo, Mikko Arvas, Scott Bakker, Jarod Chapman, Olga Chertkov, Pedro Coutinho, Dan Cullen, Etienne Danchin, Igor Grigoriev, Paul Harris, Melissa Jackson, Christian Kubicek, Cliff Han, Isaac Ho, Luis Larrondo, Alfredo Lopez de Leon, Jon Magnuson, Sandy Merino, Monica Misra, Beth Nelson, Nicholas Putman, Barbara Robbertse, Asaf Salamov, Monika Schmoll, Astrid Terry, Nina Thayer, Ann Westerholm-Parvinen, Conrad Schoch, Jian Yao, Ravi Barabote, Mary Anne Nelson, Chris Detter, David Bruce, Cheryl Kuske, Gary Xie, Paul Richardson, Daniel Rokhsar, Susan Lucas, Edward Rubin, Nigel Dunn-Coleman, Michael Ward, Thomas Brettin
Nature Biotechnology 26:553-560 (2008)10.1038/nbt1403
The genome sequence of the model ascomycete fungus Podospora anserina
Eric Espagne, Olivier Lespinet, Fabienne Malagnac, Corinne da Silva, Olivier Jaillon, Betina Porcel, Arnaud Couloux, Jean-Marc Aury, Béatrice Ségurens, Julie Poulain, Véronique Anthouard, Sandrine Grossetete, Hamid Khalili, Evelyne Coppin, Michelle Déquard-Chablat, Marguerite Picard, Véronique Contamine, Sylvie Arnaise, Anne Bourdais, Véronique Berteaux-Lecellier, Daniel Gautheret, Ronald de Vries, Evy Battaglia, Pedro Coutinho, Etienne Gj Danchin, Bernard Henrissat, Riyad El Khoury, Annie Sainsard-Chanet, Antoine Boivin, Bérangère Pinan-Lucarré, Carole Sellem, Robert Debuchy, Patrick Wincker, Jean Weissenbach, Philippe Silar
Genome Biology 9:R77 (2008)10.1186/gb-2008-9-5-r77
2007
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
Herman Pel, Johannes de Winde, David Archer, Paul Dyer, Gerald Hofmann, Peter Schaap, Geoffrey Turner, Ronald de Vries, Richard Albang, Kaj Albermann, Mikael Andersen, Jannick Bendtsen, Jacques Benen, Marco van den Berg, Stefaan Breestraat, Mark Caddick, Roland Contreras, Michael Cornell, Pedro Coutinho, Etienne Danchin, Alfons Debets, Peter Dekker, Piet van Dijck, Alard van Dijk, Lubbert Dijkhuizen, Arnold Driessen, Christophe D'Enfert, Steven Geysens, Coenie Goosen, Gert Groot, Piet de Groot, Thomas Guillemette, Bernard Henrissat, Marga Herweijer, Johannes van den Hombergh, Cees van den Hondel, Rene van Der Heijden, Rachel van Der Kaaij, Frans Klis, Harrie Kools, Christian Kubicek, Patricia van Kuyk, Jürgen Lauber, Xin Lu, Marc van den Maarel, Rogier Meulenberg, Hildegard Menke, Martin Mortimer, Jens Nielsen, Stephen Oliver, Maurien Olsthoorn, Karoly Pal, Noël van Peij, Arthur Ram, Ursula Rinas, Johannes Roubos, Cees Sagt, Monika Schmoll, Jibin Sun, David Ussery, János Varga, Wouter Vervecken, Peter van de Vondervoort, Holger Wedler, Han Wösten, An-Ping Zeng, Albert van Ooyen, Jaap Visser, Hein Stam
Nature Biotechnology 25:221-231 (2007)10.1038/nbt1282
2006
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
Gerald A. Tuskan, Stephen Difazio, Stefan Jansson, Jörg Bohlmann, Igor Grigoriev, Uffe Hellsten, Nicholas Putnam, Steven Ralph, Stephane Rombauts, Asaf Salamov, Jacquie Schein, Lieven Sterck, Andrea Aerts, Rishikesh Bhalerao, Rupali Bhalerao, Damien Blaudez, Wout Boerjan, Annick Brun-Jacob, Amy Brunner, Victor Busov, Malcolm Campbell, John Carlson, Michel M. Chalot, Jarod Chapman, Gwo-Liang Chen, D. Cooper, Pedro Coutinho, Jérémy Couturier, Sarah Covert, Quentin Cronk, R. Cunningham, John Davis, S. Degroeve, Annabelle Dejardin, Claude Depamphilis, John Detter, Bill Dirks, Inna Dubchak, Sébastien Duplessis, Jürgen Ehlting, Brian Ellis, Karla Gendler, David Goodstein, Michael Gribskov, Jane Grimwood, Andrew Groover, Lee Gunter, Britta Hamberger, Berthold Heinze, Ykä Helariutta, Bernard Henrissat, Dawn Holligan, Robert Holt, Wayne Huang, Nurul Islam-Faridi, Steven Jones, Matthew Jones-Rhoades, Richard Jorgensen, Chandrashekha Joshi, Jaakko Kangasjärvi, Jan Karlsson, Colin Kelleher, Robert Kirkpatrick, Matias Kirst, Annegret Kohler, Udaya Kalluri, Frank Larimer, Jim Leebens-Mack, Jean-Charles Leplé, Philip Locascio, Yunian Lou, Susan Lucas, Francis Martin, Barbara Montanini, Carolyn Napoli, David R Nelson, C. Dana Nelson, Kaisa Nieminen, Ove Nilsson, Veronica Pereda, Gary Peter, Ryan Philippe, Gilles G. Pilate, Alexandre Poliakov, Jane Razumovskaya, Paul Richardson, Cécile Rinaldi, Kermit Ritland, Pierre Rouzé, Dmitriy Ryaboy, Jeremy Schmutz, J. Schrader, Bo Segerman, Heesun Shin, Asim Siddiqui, Fredrik Sterky, Astrid Terry, Chung-Jui Tsai, Edward Uberbacher, Per Unneberg, Jorma Vahala, Kerr Wall, Susan Wessler, Guojun Yang, Tongming Yin, Carl Douglas, Marco Marra, Goran Sandberg, Yves van de Peer, Daniel S. Rokhsar
Science 313:1596-1604 (2006)10.1126/science.1128691
2005
Evolutionary and mechanistic relationships between glycosidases acting on ??- and ??-bonds
Mark Stam, Eric Blanc, Pedro Coutinho, Bernard Henrissat
Carbohydrate Research 340:2728-34 (2005)10.1016/j.carres.2005.09.018
Carbohydrate-Active Enzymes Involved in the Secondary Cell Wall Biogenesis in Hybrid Aspen
Henrik Aspeborg, Jarmo Schrader, Pedro Coutinho, Mark Stam, Åsa Kallas, Soraya Djerbi, Peter Nilsson, Stuart Denman, Bahram Amini, Fredrik Sterky, Emma Master, Göran Sandberg, Ewa Mellerowicz, Björn Sundberg, Bernard Henrissat, Tuula Teeri
Plant Physiology 137:983-97 (2005)10.1104/pp.104.055087
