Publications
AFMB collection in HAL: here
2015
Gut microbiota richness promotes its stability upon increased dietary fibre intake in healthy adults
Julien Tap, Jean-Pierre Furet, Martine Bensaada, Catherine Philippe, Hubert Roth, Sylvie Rabot, Omar Lakhdari, Vincent Lombard, Bernard Henrissat, Gerard Corthier, Eric Fontaine, Joel Dore, Marion Leclerc
Environmental Microbiology 17:4954-4964 (2015)10.1111/1462-2920.13006
Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus
Marie Couturier, David Navarro, Didier Chevret, Bernard Henrissat, François Piumi, Francisco J. Ruiz-Duenas, Angel T. Martinez, Igor V. Grigoriev, Robert Riley, Anna Lipzen, Jean-Guy Berrin, Emma R. Master, Marie-Noelle Rosso
Biotechnology for Biofuels 8 (2015)10.1186/s13068-015-0407-8
Identification of the nucleophile catalytic residue of GH51 alpha-L-arabinofuranosidase from Pleurotus ostreatus
Antonella Amore, Alfonso Iadonisi, Florence Vincent, Vincenza Faraco
AMB Express 5 (2015)10.1186/s13568-015-0164-x
Synthesis and structural characterization of monomeric and dimeric peptide nucleic acids prepared by using microwave-promoted multicomponent reactions
Reuben Ovadia, Aurelien Lebrun, Ivan Barvik, Jean-Jacques Vasseur, Carine Baraguey, Karine Alvarez
Organic & Biomolecular Chemistry 13:11052-11071 (2015)10.1039/c5ob01604e
Arenavirus Glycan Shield Promotes Neutralizing Antibody Evasion and Protracted Infection
Rami Sommerstein, Lukas Flatz, Melissa M. Remy, Pauline Malinge, Giovanni Magistrelli, Nicolas Fischer, Mehmet Sahin, Andreas Bergthaler, Sebastien Igonet, Jan Ter Meulen, Dorothee Rigo, Paolo Meda, Nadia Rabah, Bruno Coutard, Thomas A. Bowden, Paul-Henri Lambert, Claire-Anne Siegrist, Daniel D. Pinschewer
PLoS Pathogens 11 (2015)10.1371/journal.ppat.1005276
Linking rapid erosion of the Mekong River delta to human activities
Edward J. Anthony, Guillaume Brunier, Manon Besset, Marc Goichot, Philippe Dussouillez, Van Lap Nguyen
Scientific Reports 5 (2015)10.1038/srep14745
Tissue-Specific Regulation of Drosophila NF-x03BA;B Pathway Activation by Peptidoglycan Recognition Protein SC
D. Costechareyre, F. Capo, A. Fabre, D. Chaduli, C. Kellenberger, A. Roussel, B. Charroux, J. Royet
Journal of Innate Immunity 8:67-80 (2015)10.1159/000437368
The Type VI Secretion TssEFGK-VgrG Phage-Like Baseplate Is Recruited to the TssJLM Membrane Complex via Multiple Contacts and Serves As Assembly Platform for Tail Tube/Sheath Polymerization
Yannick R Brunet, Abdelrahim Zoued, Frédéric Boyer, Badreddine Douzi, E. Cascales
PLoS Genetics 11:e1005545 (2015)10.1371/journal.pgen.1005545
De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulis Strain LF580 Unravels Life-Style Traits and Anticancerous Scopularide Biosynthetic Gene Cluster
Abhishek Kumar, Bernard Henrissat, Mikko Arvas, Muhammad Fahad Syed, Nils Thieme, J. Philipp Benz, Jens Laurids Sorensen, Eric Record, Stefanie Poeggeler, Frank Kempken
PLoS ONE 10 (2015)10.1371/journal.pone.0140398
Bacteriophage module reshuffling results in adaptive host range as exemplified by the baseplate model of listerial phage A118
Christian Cambillau
Virology 484:86-92 (2015)10.1016/j.virol.2015.05.015
Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides
Meng Wu, Nathan P. Mcnulty, Dmitry A. Rodionov, Matvei S. Khoroshkin, Nicholas W. Griffin, Jiye Cheng, Phil Latreille, Randall A. Kerstetter, Nicolas Terrapon, Bernard Henrissat, Andrei L. Osterman, Jeffrey I. Gordon
Science 350 (2015)10.1126/science.aac5992
RNA 1 and RNA 2 Genomic Segments of Chronic Bee Paralysis Virus Are Infectious and Induce Chronic Bee Paralysis Disease
Ibrahim Youssef, Frank Schurr, Adeline Goulet, Nicolas Cougoule, Magali Ribiere-Chabert, Herve Darbon, Richard Thiery, Eric Dubois
Journal of Immunology Research 2015:423493 (8 pages) (2015)10.1155/2015/423493
NMR study of non-structural proteins-part II: H-1, C-13, N-15 backbone and side-chain resonance assignment of macro domain from Venezuelan equine encephalitis virus (VEEV)
Garyfallia I. Makrynitsa, Dioni Ntonti, Konstantinos D. Marousis, Aikaterini C. Tsika, Julie Lichiere, Nicolas Papageorgiou, Bruno Coutard, Detlef Bentrop, Georgios A. Spyroulias
Biomolecular NMR Assignments 9:247-251 (2015)10.1007/s12104-014-9584-9
Recombinant protein production facility for fungal biomass-degrading enzymes using the yeast Pichia pastoris
Mireille Haon, Sacha Grisel, David Navarro, Antoine Gruet, Jean-Guy Berrin, Christophe Bignon
Frontiers in Microbiology 6 (2015)10.3389/fmicb.2015.01002
A Metagenomic Investigation of the Duodenal Microbiota Reveals Links with Obesity
Emmanouil Angelakis, F. Armougom, Frédéric Carrière, Dipankar Bachar, René Laugier, Jean-Christophe J.-C. Lagier, Catherine Robert, Caroline Michelle, Bernard Henrissat, Didier Raoult
PLoS ONE 10 (2015)10.1371/journal.pone.0137784
Unique Organization of Extracellular Amylases into Amylosomes in the Resistant Starch-Utilizing Human Colonic Firmicutes Bacterium Ruminococcus bromii
Xiaolei Ze, Yonit Ben David, Jenny A. Laverde-Gomez, Bareket Dassa, Paul O. Sheridan, Sylvia H. Duncan, Petra Louis, Bernard Henrissat, Nathalie Juge, Nicole M. Koropatkin, Edward A. Bayer, Harry J. Flint
mBio 6 (2015)10.1128/mBio.01058-15
Functional guild classification predicts the enzymatic role of fungi in litter and soil biogeochemistry
Jennifer M. Talbot, Francis Martin, Annegret Kohler, Bernard Henrissat, Kabir G. Peay
Soil Biology and Biochemistry 88:441-456 (2015)10.1016/j.soilbio.2015.05.006
Structural disorder within paramyxoviral nucleoproteins
Sonia Longhi
FEBS Letters 589:2649-2659 (2015)10.1016/j.febslet.2015.05.055
Quantifying domain-ligand affinities and specificities by high-throughput holdup assay
Renaud Vincentelli, Katja Luck, Juline Poirson, Jolanta Polanowska, Julie Abdat, Marilyne Blémont, Jeremy Turchetto, François Iv, Kevin Ricquier, Marie-Laure Straub, Anne Forster, Patricia Cassonnet, Jean-Paul Borg, Yves Jacob, Murielle Masson, Yves Nominé, Jérôme Reboul, Nicolas Wolff, Sebastian Charbonnier, Gilles Travé
Nature Methods 12:787-793 (2015)10.1038/nmeth.3438
Insights into the Hendra virus N-TAIL-XD complex: Evidence for a parallel organization of the helical MoRE at the XD surface stabilized by a combination of hydrophobic and polar interactions
Jenny Erales, Matilde Beltrandi, Jennifer Roche, Maria Mate, Sonia Longhi
Biochimica et Biophysica Acta Proteins and Proteomics 1854:1038-1053 (2015)10.1016/j.bbapap.2015.04.031
mRNA Capping by Venezuelan Equine Encephalitis Virus nsP1: Functional Characterization and Implications for Antiviral Research
Changqing Li, Jaime Guillen, Nadia Rabah, Alexandre Blanjoie, Francoise Debart, Jean-Jacques Vasseur, Bruno Canard, Etienne Decroly, Bruno Coutard
Journal of Virology 89:8292-8303 (2015)10.1128/JVI.00599-15
Quantifying domain-ligand affinities and specificities by high-throughput holdup assay
Renaud Vincentelli, Katja Luck, Juline Poirson, Jolanta Polanowska, Julie Abdat, Marilyne Blémont, Jeremy Turchetto, François Iv, Kevin Ricquier, Marie-Laure Straub, Anne Forster, Patricia Cassonnet, Jean-Paul Borg, Yves Jacob, Murielle Masson, Yves Nominé, Jérome Reboul, Nicolas Wolff, Sebastian Charbonnier, Gilles Travé
Nature Methods 12:787-793 (2015)10.1038/nmeth.3438
Biogenesis and structure of a Type VI secretion membrane core complex
Eric Durand, van Son Nguyen, Abdelrahim Zoued, Laureen Logger, Gerard Pehau-Arnaudet, Marie-Stéphanie Aschtgen, Silvia Spinelli, Aline Desmyter, Benjamin Bardiaux, Annick Dujeancourt, Alain Roussel, Christian Cambillau, E. Cascales, Rémi Fronzes
Nature 523:555-560 (2015)10.1038/nature14667
Structure and Assembly of TP901-1 Virion Unveiled by Mutagenesis
Stephen R. Stockdale, Barry Collins, Silvia Spinelli, François P. Douillard, Jennifer Mahony, Christian Cambillau, Douwe van Sinderen
PLoS ONE 1-22 (2015)10.1371/journal.pone.0131676
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat
Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Isberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O'Donovan, Kim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier, Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, Ake Vastermark, Gerrit Vriend
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2015:1-5 (2015)10.1093/database/bav063
Mechanisms of partner recognition by intrinsically disordered proteins
M. Dosnon, A. Gruet, D. Blocquel, J. Erales, A. Morrone, D. Bonetti, M. Fuxreiter, S. Gianni, C. Bignon, S. Longhi
European Biophysics Journal 44:S229 (2015)
Structural Disorder within Paramyxoviral Nucleoproteins and Phosphoproteins in Their Free and Bound Forms: From Predictions to Experimental Assessment
Johnny Habchi, Sonia Longhi
International Journal of Molecular Sciences 16:15688-15726 (2015)10.3390/ijms160715688
Development and evaluation of a sublingual tablet based on recombinant Bet v 1 in birch pollen-allergic patients
E. Nony, J. Bouley, M. Le Mignon, P. Lemoine, K. Jain, S. Horiot, L. Mascarell, M. Pallardy, R. Vincentelli, Philippe Leone, A. Roussel, T. Batard, K. Abiteboul, B. Robin, O. de Beaumont, M. Arvidsson, S. Rak, P. Moingeon
Allergy 70:795-804 (2015)10.1111/all.12622
Accelerating small compounds discovery targeting protein-protein interaction
S. Milhas, S. Betzi, P. Roche, M. Cholay, A. Restouin, M. -J. Basse, A. Heremans, R. Kashyap, J. -C. Lissitzky, A. Lugari, T. Roux, C. Eydoux, C. Derviaux, M. Badol, V. Hamon, M. -E. Gourdel, S. Combes, J. -M. Brunel, J. -C. Rain, P. Zimmermann, M. Aurrand-Lions, E. Trinquet, Y. Collette, J. -C. Guillemot, X. Morelli
FEBS Journal 282:134 (2015)
Camelid Ig V genes reveal significant human homology not seen in therapeutic target genes, providing for a powerful therapeutic antibody platform
Alex Klarenbeek, Khalil El Mazouari, Aline Desmyter, Christophe Blanchetot, Anna Hultberg, Natalie De Jonge, Rob C. Roovers, Christian Cambillau, Sylvia Spinelli, Jurgen Del-Favero, Theo Verrips, Hans J. De Haard, Ikbel Achour
mAbs 7:693-706 (2015)10.1080/19420862.2015.1046648
Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts
Guillaume Morel, Lieven Sterck, Dominique Swennen, Marina Marcet-Houben, Djamila Onesime, Anthony Levasseur, Noémie Jacques, Sandrine Mallet, Arnaud Couloux, Karine Labadie, Joelle Amselem, Jean-Marie Beckerich, Bernard Henrissat, Yves van de Peer, Patrick Wincker, Jean-Luc Souciet, Toni Gabaldón, Colin R. Tinsley, Serge Casaregola
Scientific Reports 5 (2015)10.1038/srep11571
Marine Macrocyclic Imines, Pinnatoxins A and G: Structural Determinants and Functional Properties to Distinguish Neuronal α7 from Muscle α12βγδ nAChRs.
Yves Bourne, Gerlind Sulzenbacher, Zoran Radić, Rómulo Aráoz, Morgane Reynaud, Evelyne Benoit, Armen Zakarian, Denis Servent, Jordi Molgó, Palmer Taylor, Pascale Marchot
Structure 23:1106-15 (2015)10.1016/j.str.2015.04.009
Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels
Elsa Petit, Maddalena V. Coppi, James C. Hayes, Andrew C. Tolonen, Thomas Warnick, William G. Latouf, Danielle Amisano, Amy Biddle, Supratim Mukherjee, Natalia Ivanova, Athanassios Lykidis, Miriam Land, Loren Hauser, Nikos Kyrpides, Bernard Henrissat, Joanne Lau, Danny J. Schnell, George M. Church, Susan B. Leschine, Jeffrey L. Blanchard
PLoS ONE (2015)10.1371/journal.pone.0118285
Glycan complexity dictates microbial resource allocation in the large intestine
Artur Rogowski, Jonathon A. Briggs, Jennifer C. Mortimer, Theodora Tryfona, Nicolas Terrapon, Elisabeth C. Lowe, Arnaud Basle, Carl Morland, Alison M. Day, Hongjun Zheng, Theresa E. Rogers, Paul Thompson, Alastair R. Hawkins, Madhav P. Yadav, Bernard Henrissat, Eric C. Martens, Paul Dupree, Harry J. Gilbert, David N. Bolam
Nature Communications 6 (2015)10.1038/ncomms8481
Camelid nanobodies: killing two birds with one stone
Aline Desmyter, Silvia Spinelli, Alain Roussel, Christian Cambillau
Current Opinion in Structural Biology 32:1-8 (2015)10.1016/j.sbi.2015.01.001
Key challenges for the creation and maintenance of specialist protein resources
Gemma L. Holliday, Amos Bairoch, Pantelis G. Bagos, Arnaud Chatonnet, David J. Craik, Robert D. Finn, Bernard Henrissat, David Landsman, Gerard Manning, Nozomi Nagano, Claire O'Donovan, Kim D. Pruitt, Neil D. Rawlings, Milton Saier, Ramanathan Sowdhamini, Michael Spedding, Narayanaswamy Srinivasan, Gert Vriend, Patricia C. Babbitt, Alex Bateman
Proteins - Structure, Function and Bioinformatics 83:1005-1013 (2015)10.1002/prot.24803
X-ray and Cryo-electron Microscopy Structures of Monalysin Pore-forming Toxin Reveal Multimerization of the Pro-form
Philippe Leone, Cecilia Bebeacua, Onya Opota, Christine Kellenberger, Bruno Klaholz, Igor Orlov, Christian Cambillau, Bruno Lemaitre, Alain Roussel
Journal of Biological Chemistry 290:13191-13201 (2015)10.1074/jbc.M115.646109
Structural basis for carbohydrate binding properties of a plant chitinase-like agglutinin with conserved catalytic machinery
Gerlind Sulzenbacher, Veronique Roig-Zamboni, Willy J. Peumans, Bernard Henrissat, Els J. M. Van Damme, Yves Bourne
Journal of Structural Biology 190:115-121 (2015)10.1016/j.jsb.2015.01.013
Enzymatic synthesis of acyclic nucleoside thiophosphonate diphosphates: Effect of the alpha-phosphorus configuration on HIV-1 RT activity
Stephane Priet, Loic Roux, Magali Saez-Ayala, Francois Ferron, Bruno Canard, Karine Alvarez
Antiviral Research 117:122-131 (2015)10.1016/j.antiviral.2015.03.003
The targeted recognition of Lactococcus lactis phages to their polysaccharide receptors
Orla Mccabe, Silvia Spinelli, Carine Farenc, Myriam Labbe, Denise Tremblay, Stephanie Blangy, Stefan Oscarson, Sylvain Moineau, Christian Cambillau
Molecular Microbiology 96:875-886 (2015)10.1111/mmi.12978
mRNA maturation in giant viruses: variation on a theme
Stéphane Priet, Audrey Lartigue, Françoise Debart, Jean-Michel Claverie, Chantal Abergel
Nucleic Acids Research 43:3776-3788 (2015)10.1093/nar/gkv224
NMR study of non-structural proteins-part I: H-1, C-13, N-15 backbone and side-chain resonance assignment of macro domain from Mayaro virus (MAYV)
Efstathios Melekis, Aikaterini C. Tsika, Julie Lichiere, Christos T. Chasapis, Irene Margiolaki, Nicolas Papageorgiou, Bruno Coutard, Detlef Bentrop, Georgios A. Spyroulias
Biomolecular NMR Assignments 9:191-195 (2015)10.1007/s12104-014-9572-0
Structural and biophysical analysis of sequence insertions in the Venezuelan Equine Encephalitis Virus macro domain
Jaime Guillen, Julie Lichiere, Nadia Rabah, Brett F. Beitzel, Bruno Canard, Bruno Coutard
Virus Research 201:94-100 (2015)10.1016/j.virusres.2015.02.018
Inhibition of Type VI Secretion by an Anti-TssM Llama Nanobody
van Son Nguyen, Laureen Logger, Silvia Spinelli, Aline Desmyter, Thi Thu Hang Le, Christine Kellenberger, Badreddine Douzi, Eric Durand, Alain Roussel, E. Cascales, Christian Cambillau
PLoS ONE 10:1-14 (2015)
Primer-Dependent and Primer-Independent Initiation of Double Stranded RNA Synthesis by Purified Arabidopsis RNA-Dependent RNA Polymerases RDR2 and RDR6
Anthony Devert, Nicolas Fabre, Maïna Floris, Bruno Canard, Christophe Robaglia, Patrice Crété
PLoS ONE 10 (2015)10.1371/journal.pone.0120100.s006
Automatic prediction of polysaccharide utilization loci in Bacteroidetes species
Nicolas Terrapon, Vincent Lombard, Harry J. Gilbert, Bernard Henrissat
Bioinformatics 31:647-655 (2015)10.1093/bioinformatics/btu716
The RNA Template Channel of the RNA-Dependent RNA Polymerase as a Target for Development of Antiviral Therapy of Multiple Genera within a Virus Family
Lonneke van Der Linden, Laia Vives-Adrián, Barbara Selisko, Cristina Ferrer-Orta, Xinran Liu, Kjerstin Lanke, Rachel Ulferts, Armando M. de Palma, Federica Tanchis, Nesya Goris, David Lefebvre, Kris de Clercq, Pieter Leyssen, Céline Lacroix, Gerhard Pürstinger, Bruno Coutard, Bruno Canard, David D. Boehr, Jamie J. Arnold, Craig E. Cameron, Nuria Verdaguer, Johan Neyts, Frank J. M van Kuppeveld
PLoS Pathogens 11 (2015)10.1371/journal.ppat.1004733.s010
Insights into the coiled-coil organization of the Hendra virus phosphoprotein from combined biochemical and SAXS studies
Matilde Beltrandi, David Blocquel, Jenny Erales, Pascale Barbier, Andrea Cavalli, Sonia Longhi
Virology 477:42-55 (2015)10.1016/j.virol.2014.12.029
Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen
Braham Dhillon, Nicolas Feau, Andrea L. Aerts, Stephanie Beauseigle, Louis Bernier, Alex Copeland, Adam Foster, Navdeep Gill, Bernard Henrissat, Padmini Herath, Kurt M. Labutti, Anthony Levasseur, Erika A. Lindquist, Eline Majoor, Robin A. Ohm, Jasmyn L. Pangilinan, Amadeus Pribowo, John N. Saddler, Monique L. Sakalidis, Ronald P. De Vries, Igor V. Grigoriev, Stephen B. Goodwin, Philippe Tanguay, Richard C. Hamelin
Proceedings of the National Academy of Sciences of the United States of America 112:3451-3456 (2015)10.1073/pnas.1424293112
Demonstration of a Folding after Binding Mechanism in the Recognition between the Measles Virus N-TAIL and X Domains
Marion Dosnon, Daniela Bonetti, Angela Morrone, Jenny Erales, Eva Di Silvio, Sonia Longhi, Stefano Gianni
ACS Chemical Biology 10:795-802 (2015)10.1021/cb5008579
Production, crystallization and X-ray diffraction analysis of a complex between a fragment of the TssM T6SS protein and a camelid nanobody
van Son Nguyen, Silvia Spinelli, Aline Desmyter, Thi Thu Hang Le, Christine Kellenberger, E. Cascales, Christian Cambillau, Alain Roussel
Acta crystallographica Section F : Structural biology communications [2014-...] 71:266-271 (2015)10.1107/S2053230X15000709
Molecular Basis for Structural Heterogeneity of an Intrinsically Disordered Protein Bound to a Partner by Combined ESI-IM-MS and Modeling
Annalisa d'Urzo, Albert Konijnenberg, Giulia Rossetti, Johnny Habchi, Jinyu Li, Paolo Carloni, Frank Sobott, Sonia Longhi, Rita Grandori
Journal of The American Society for Mass Spectrometry 26:472-481 (2015)10.1007/s13361-014-1048-z
Insights on the Evolution of Mycoparasitism from the Genome of Clonostachys rosea
Magnus Karlsson, Mikael Brandström Durling, Jaeyoung Choi, Chatchai Kosawang, Gerald Lackner, Georgios D. Tzelepis, Kristiina Nygren, Mukesh K. Dubey, Nathalie Kamou, Anthony Levasseur, Antonio Zapparata, Jinhui Wang, Daniel Buchvaldt Amby, Birgit Jensen, Sabrina Sarrocco, Emmanuel Panteris, Anastasia L. Lagopodi, Stefanie Pöggeler, Giovanni Vannacci, David B. Collinge, Dirk Hoffmeister, Bernard Henrissat, Yong-Hwan Lee, Dan Funck Jensen
Genome Biology and Evolution 7:465-480 (2015)10.1093/gbe/evu292
A glycogene mutation map for discovery of diseases of glycosylation
Lars Hansen, Allan Lind-Thomsen, Hiren J. Joshi, Nis Borbye Pedersen, Christian Theil Have, Yun Kong, Shengjun Wang, Thomas Sparso, Niels Grarup, Malene Bech Vester-Christensen, Katrine Schjoldager, Hudson H. Freeze, Torben Hansen, Oluf Pedersen, Bernard Henrissat, Ulla Mandel, Henrik Clausen, Hans H. Wandall, Eric P. Bennett
Glycobiology 25:211-224 (2015)10.1093/glycob/cwu104
A Flexible Extension of the Drosophila Ultrabithorax Homeodomain Defines a Novel Hox/PBC Interaction Mode
Nicolas Foos, Corinne Maurel-Zaffran, Maria Jesus Mate, Renaud Vincentelli, Matthieu Hainaut, Helene Berenger, Jacques Pradel, Andrew J. Saurin, Miguel Ortiz-Lombardia, Yacine Graba
Structure 23:270-279 (2015)10.1016/j.str.2014.12.011
Functional Annotation of the Ophiostoma novo-ulmi Genome: Insights into the Phytopathogenicity of the Fungal Agent of Dutch Elm Disease
André M. Comeau, Josée Dufour, Guillaume F. Bouvet, Volker Jacobi, Martha Nigg, Bernard Henrissat, Jérôme Laroche, Roger C. Levesque, Louis Bernier
Genome Biology and Evolution 7:410-430 (2015)10.1093/gbe/evu281
Structural and biochemical characterization of the -N-acetylglucosaminidase from Thermotoga maritima: Toward rationalization of mechanistic knowledge in the GH73 family
A. Lipski, M. Herve, V. Lombard, D. Nurizzo, D. Mengin-Lecreulx, Y. Bourne, Florence Vincent
Glycobiology 25:319-330 (2015)10.1093/glycob/cwu113
Characterisation of Structural Proteins from Chronic Bee Paralysis Virus (CBPV) Using Mass Spectrometry
Aurore Chevin, Bruno Coutard, Philippe Blanchard, Anne-Sophie Dabert-Gay, Magali Ribière-Chabert, Richard Thiéry
Viruses 7:3329-44 (2015)10.3390/v7062774
X-ray structure and activities of an essential Mononegavirales L-protein domain
Guido C. Paesen, Axelle Collet, Corinne Sallamand, Francoise Debart, Jean-Jacques Vasseur, Bruno Canard, Etienne Decroly, Jonathan M. Grimes
Nature Communications 6:8749 (2015)10.1038/ncomms9749
Assessing Binding Perturbation due to Artificial Vibrational Probe Groups in the Nucleoprotein-Phosphoprotein Complex of the Nipah Virus
Rebecca B. Wai, Shana R. Burstein, Sara K. Hess, Jenny Erales, Sonia Longhi, Casey H. Londergan
Biophysical Journal 108:389A (2015)
Developing a Protocol for Ensemble and Vibrational Probe-Containing Molecular Dynamics Simulations of the Nipah Ntail-XD Complex
Shana R. Burstein, Rebecca B. Wai, Sara K. Hess, Casey H. Londergan, Jenny Erales, Sonia Longhi
Biophysical Journal 108:227A (2015)
Dynamics of the Intrinsically Disordered C-Terminal Domain of the Nipah Virus Nucleoprotein and Interaction with the X Domain of the Phosphoprotein as Unveiled by NMR Spectroscopy
Lorenzo Baronti, Jenny Erales, Johnny Habchi, Isabella C. Felli, Roberta Pierattelli, Sonia Longhi
ChemBioChem 16:268-276 (2015)10.1002/cbic.201402534
Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis
Jeanne Dore, Marie Perraud, Cindy Dieryckx, Annegret Kohler, Emmanuelle Morin, Bernard Henrissat, Erika Lindquist, Sabine D. Zimmermann, Vincent Girard, Alan Kuo, Igor V Grigoriev, Francis Martin, Roland Marmeisse, Gilles Gay
New Phytologist 208:1169-1187 (2015)10.1111/nph.13546
Deciphering genome content and evolutionary relationships of isolates from the fungus Magnaporthe oryzae attacking different host plants
Helene Chiapello, Ludovic Mallet, Cyprien Guerin, Gabriela Aguileta, Joelle J. Amselem, Thomas Kroj, Enrique Ortega-Abboud, Marc-Henri Lebrun, Bernard Henrissat, Annie Gendrault, François Rodolphe, Didier Tharreau, Elisabeth Fournier
Genome Biology and Evolution 7:2896-2912 (2015)10.1093/gbe/evv187
Crystallization and preliminary X-ray analysis of the C-terminal fragment of PorM, a subunit of the Porphyromonas gingivalis type IX secretion system
Julien Stathopulos, Christian Cambillau, E. Cascales, Alain Roussel, Philippe Leone
Acta crystallographica Section F : Structural biology communications [2014-...] 71:71-74 (2015)10.1107/S2053230X1402559X
Structure and boosting activity of a starch-degrading lytic polysaccharide monooxygenase
Leila Lo Leggio, Thomas J. Simmons, Jens-Christian N. Poulsen, Kristian E. H. Frandsen, Glyn R. Hemsworth, Mary A. Stringer, Pernille Von Freiesleben, Morten Tovborg, Katja S. Johansen, Leonardo de Maria, Paul V. Harris, Chee-Leong Soong, Paul Dupree, Theodora Tryfona, Nicolas Lenfant, Bernard Henrissat, Gideon J. Davies, Paul H. Walton
Nature Communications 6:5961 (2015)10.1038/ncomms6961
The transcriptome of Euglena gracilis reveals unexpected metabolic capabilities for carbohydrate and natural product biochemistry
Ellis C. O'Neill, Martin Trick, Lionel Hill, Martin Rejzek, Renata G. Dusi, Chris J. Hamilton, Paul V. Zimba, Bernard Henrissat, Robert A. Field
Molecular BioSystems 11:2808-2820 (2015)10.1039/c5mb00319a
Closely related fungi employ diverse enzymatic strategies to degrade plant biomass
Isabelle Benoit, Helena Culleton, Miaomiao Zhou, Marcos Difalco, Guillermo Aguilar‑osorio, Evy Battaglia, Ourdia Bouzid, Carlo P J M Brouwer, Hala B O El‑bushari, Pedro M Coutinho, Birgit S Gruben, Kristiina S Hildén, Jos Houbraken, Luis Alexis Jiménez Barboza, Anthony Levasseur, Eline Majoor, Miia R Mäkelä, Hari‑mander Narang, Blanca Trejo‑aguilar, Joost van den Brink, Patricia A Vankuyk, Ad Wiebenga, Vincent Mckie, Barry Mccleary, Adrian Tsang, Bernard Henrissat, Ronald P de Vries
Biotechnology for Biofuels 8:1-14 (2015)10.1186/s13068-015-0285-0
Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus
Michael H Perlin, Joelle J. Amselem, Eric Fontanillas, Su San Toh, Zehua Chen, Jonathan Goldberg, Sébastien Duplessis, Bernard Henrissat, Sarah Young, Qiandong Zeng, Gabriela Aguileta, Elsa Petit, Helene Badouin, Jared Andrews, Dominique Razeeq, Toni Gabaldón, Hadi Quesneville, Tatiana Giraud, Michael E Hood, David J Schultz, Christina A Cuomo
BMC Genomics 16:np (2015)10.1186/s12864-015-1660-8
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
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Nature Genetics 47:410-U176 (2015)10.1038/ng.3223
Crystal structure of snake venom acetylcholinesterase in complex with inhibitory antibody fragment Fab410 bound at the peripheral site - Evidence for open and closed states of a back door channel
Yves Bourne, Ludovic Renault, Pascale Marchot
Journal of Biological Chemistry 290:1522-1535 (2015)10.1074/jbc.M114.603902
Structure–function characterization reveals new catalytic diversity in the galactose oxidase and glyoxal oxidase family
Delu (tyler) Yin, Saioa Urresti, Mickael Lafond, Esther M. Johnston, Fatemeh Derikvand, Luisa Ciano, Jean-Guy Berrin, Bernard Henrissat, Paul H. Walton, Gideon J. Davies, Harry Brumer
Nature Communications 6:10197 (2015)10.1038/ncomms10197
