Équipe : Glycogénomique

Publications

2022

2022
Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides

Lucelia Cabral, Gabriela Persinoti, Douglas Paixão, Marcele Martins, Mariana Morais, Mariana Chinaglia, Mariane Domingues, Mauricio Sforca, Renan Pirolla, Wesley Generoso, Clelton Santos, Lucas Maciel, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Mario Murakami

Nature Communications 13:629 (2022)10.1038/s41467-022-28310-y

2022
The Land–Sea Connection: Insights Into the Plant Lineage from a Green Algal Perspective

Charles Bachy, Fabian Wittmers, Jan Muschiol, Maria Hamilton, Bernard Henrissat, Alexandra Worden

Annual Review of Plant Biology 73 (2022)10.1146/annurev-arplant-071921-100530

2022
Functional exploration of the glycoside hydrolase family GH113

Marie Couturier, Mélanie Touvrey-Loiodice, Nicolas Terrapon, Elodie Drula, Laurine Buon, Christine Chirat, Bernard Henrissat, William Helbert

PLoS ONE 17:e0267509 (2022)10.1371/journal.pone.0267509

2022
Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota

Matthew Ostrowski, Sabina Leanti La Rosa, Benoit Kunath, Andrew Robertson, Gabriel Pereira, Live Hagen, Neha Varghese, Ling Qiu, Tianming Yao, Gabrielle Flint, James Li, Sean Mcdonald, Duna Buttner, Nicholas Pudlo, Matthew Schnizlein, Vincent Young, Harry Brumer, Thomas Schmidt, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Bruce Hamaker, Emiley Eloe-Fadrosh, Ashootosh Tripathi, Phillip Pope, Eric Martens

Nature Microbiology 7:556-569 (2022)10.1038/s41564-022-01093-0

2022
Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi

Brian Looney, Shingo Miyauchi, Emmanuelle Morin, Elodie Drula, Pierre Emmanuel Courty, Annegret Kohler, Alan Kuo, Kurt Labutti, Jasmyn Pangilinan, Anna Lipzen, Robert Riley, William Andreopoulos, Guifen He, Jenifer Johnson, Matt Nolan, Andrew Tritt, Kerrie Barry, Igor Grigoriev, László Nagy, David Hibbett, Bernard Henrissat, P. Brandon Matheny, Jesse Labbé, Francis Martin

New Phytologist 233:2294-2309 (2022)10.1111/nph.17892

2022
Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species

Yi-Fei Sun, Annie Lebreton, Jia-Hui Xing, Yu-Xuan Fang, Jing Si, Emmanuelle Morin, Shingo Miyauchi, Elodie Drula, Steven Ahrendt, Kelly Cobaugh, Anna Lipzen, Maxim Koriabine, Robert Riley, Annegret Kohler, Kerrie Barry, Bernard Henrissat, Igor Grigoriev, Francis Martin, Bao-Kai Cui

Journal of Fungi 8:311 (2022)10.3390/jof8030311

2022
Assembly and synthesis of the extracellular matrix in brown algae

Lisa Mazéas, Rina Yonamine, Tristan Barbeyron, Bernard Henrissat, Elodie Drula, Nicolas Terrapon, Chikako Nagasato, Cécile Hervé

Seminars in Cell and Developmental Biology (2022)10.1016/j.semcdb.2022.03.005

2022
The ectomycorrhizal basidiomycete Laccaria bicolor releases a GH28 polygalacturonase that plays a key role in symbiosis establishment

Jean-Guy Berrin, Feng Zhang, Aurore Labourel, Mireille Haon, Minna Kemppainen, Emilie da Silva Machado, Nicolas Brouilly, Claire Veneault-Fourrey, Annegret Kohler, Marie‐noëlle Rosso, Alejandro Pardo, Bernard Henrissat, Jean‐guy Berrin, Francis Martin

New Phytologist 233:2534-2547 (2022)10.1111/nph.17940

2022
Phenotypic and Genomic Diversification in Complex Carbohydrate-Degrading Human Gut Bacteria

Nicholas Pudlo, Karthik Urs, Ryan Crawford, Ali Pirani, Todd Atherly, Roberto Jimenez, Nicolas Terrapon, Bernard Henrissat, Daniel Peterson, Cherie Ziemer, Evan Snitkin, Eric Martens

mSystems 7:e0094721 (2022)10.1128/msystems.00947-21

2022
The carbohydrate-active enzyme database: functions and literature

Elodie Drula, Marie-Line Garron, Suzan Dogan, Vincent Lombard, Bernard Henrissat, Nicolas Terrapon

Nucleic Acids Research 50:D571-D577 (2022)10.1093/nar/gkab1045

2021

2021
Discovery of fungal oligosaccharide-oxidising flavo-enzymes with previously unknown substrates, redox-activity profiles and interplay with LPMOs

Majid Haddad Momeni, Folmer Fredslund, Bastien Bissaro, Olanrewaju Raji, Thu Vuong, Sebastian Meier, Tine Sofie Nielsen, Vincent Lombard, Bruno Guigliarelli, Frédéric Biaso, Mireille Haon, Sacha Grisel, Bernard Henrissat, Ditte Hededam Welner, Emma Master, Jean-Guy Berrin, Maher Abou Hachem

Nature Communications 12 (2021)10.1038/s41467-021-22372-0

2021
Genetic determinants of endophytism in the Arabidopsis root mycobiome

Fantin Mesny, Shingo Miyauchi, Thorsten Thiergart, Brigitte Pickel, Lea Atanasova, Magnus Karlsson, Bruno Hüttel, Kerrie Barry, Sajeet Haridas, Cindy Chen, Diane Bauer, William Andreopoulos, Jasmyn Pangilinan, Kurt Labutti, Robert Riley, Anna Lipzen, Alicia Clum, Elodie Drula, Bernard Henrissat, Annegret Kohler, Igor Grigoriev, Francis Martin, Stéphane Hacquard

Nature Communications 12:7227 (2021)10.1038/s41467-021-27479-y

2021
Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates

Jennifer Brown, Candice Swift, Stephen Mondo, Susanna Seppala, Asaf Salamov, Vasanth Singan, Bernard Henrissat, Elodie Drula, John Henske, Samantha Lee, Kurt Labutti, Guifen He, Mi Yan, Kerrie Barry, Igor Grigoriev, Michelle O'Malley

Biotechnology for Biofuels 14:234 (2021)10.1186/s13068-021-02083-w

2021
Clinical evidence of the role of Methanobrevibacter smithii in severe acute malnutrition

Aminata Camara, Salimata Konate, Maryam Tidjani Alou, Aly Kodio, Amadou Hamidou Togo, Sebastien Cortaredona, Bernard Henrissat, Mahamadou Ali Thera, Ogobara Doumbo, Didier Raoult, Matthieu Million

Scientific Reports 11 (2021)10.1038/s41598-021-84641-8

2021
Display of the human mucinome with defined O-glycans by gene engineered cells

Rebecca Nason, Christian Büll, Andriana Konstantinidi, Lingbo Sun, Zilu Ye, Adnan Halim, Wenjuan Du, Daniel Sørensen, Fabien Durbesson, Sanae Furukawa, Ulla Mandel, Hiren Joshi, Leo Alexander Dworkin, Lars Hansen, Leonor David, Tina Iverson, Barbara Bensing, Paul Sullam, Ajit Varki, Erik De Vries, Cornelis de Haan, Renaud Vincentelli, Bernard Henrissat, Sergey Vakhrushev, Henrik Clausen, Yoshiki Narimatsu

Nature Communications 12:4070 (2021)10.1038/s41467-021-24366-4

2021
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes

Mario Franco, Jennifer Wisecaver, a Elizabeth Arnold, Yu-Ming Ju, Jason Slot, Steven Ahrendt, Lillian Moore, Katharine Eastman, Kelsey Scott, Zachary Konkel, Stephen Mondo, Alan Kuo, Richard Hayes, Sajeet Haridas, Bill Andreopoulos, Robert Riley, Kurt Labutti, Jasmyn Pangilinan, Anna Lipzen, Mojgan Amirebrahimi, Juying Yan, Catherine Adam, Keykhosrow Keymanesh, Vivian Ng, Katherine Louie, Trent Northen, Elodie Drula, Bernard Henrissat, Huei-Mei Hsieh, Ken Youens-Clark, François Lutzoni, Jolanta Miadlikowska, Daniel Eastwood, Richard Hamelin, Igor Grigoriev, Jana U'Ren, A. Elizabeth Arnold, Yu‐ming Ju, Huei‐mei Hsieh, Ken Youens‐clark, Jana U’ren

New Phytologist (2021)10.1111/nph.17873

2021
Identification of copper-containing oxidoreductases in the secretomes of three Colletotrichum species with a focus on copper radical oxidases for the biocatalytic production of fatty aldehydes

Jean-Guy Berrin, David Ribeaucourt, Safwan Saker, David Navarro, Bastien Bissaro, Elodie Drula, Lydie Oliveira Correia, Mireille Haon, Sacha Grisel, Nicolas Lapalu, Bernard Henrissat, Richard O’connell, Fanny Lambert, Mickaël Lafond

Applied and Environmental Microbiology (2021)10.1128/AEM.01526-21

2021
Larvae of longhorned beetles (Coleoptera; Cerambycidae) have evolved a diverse and phylogenetically conserved array of plant cell wall degrading enzymes

Na Ra Shin, Seunggwan Shin, Yu Okamura, Roy Kirsch, Vincent Lombard, Petr Svacha, Olivier Denux, Sylvie Augustin, Bernard Henrissat, Duane Mckenna, Yannick Pauchet

Systematic Entomology 46:784-797 (2021)10.1111/syen.12488

2021
Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus

Rachel Koch, Gyeong Mee Yoon, Uma Aryal, Kathleen Lail, Mojgan Amirebrahimi, Kurt Labutti, Anna Lipzen, Robert Riley, Kerrie Barry, Bernard Henrissat, Igor Grigoriev, Joshua Herr, M Catherine Aime, M. Catherine Aime

Current Biology - CB 31:3905-3914.e6 (2021)10.1016/j.cub.2021.06.033

2021
Secreted pectin monooxygenases drive plant infection by pathogenic oomycetes

Bernard Henrissat, Federico Sabbadin, Saioa Urresti, Anna Avrova, Lydia Welsh, Peter Lindley, Michael Csukai, Julie Squires, Paul Walton, Gideon Davies, Neil Bruce, Stephen Whisson, Simon Mcqueen-Mason

Science 373:774-779 (2021)10.1126/science.abj1342

2021
C -type cytochrome-initiated reduction of bacterial lytic polysaccharide monooxygenases

Jessie Branch, Badri Rajagopal, Alessandro Paradisi, Nick Yates, Peter Lindley, Jake Smith, Kristian Hollingsworth, W Bruce Turnbull, Bernard Henrissat, Alison Parkin, Alan Berry, Glyn Hemsworth, W. Bruce Turnbull

Biochemical Journal 478:2927-2944 (2021)10.1042/BCJ20210376

2021
Evaluating microbiome-directed fibre snacks in gnotobiotic mice and humans

Omar Delannoy-Bruno, Chandani Desai, Arjun Raman, Robert Chen, Matthew Hibberd, Jiye Cheng, Nathan Han, Juan Castillo, Garret Couture, Carlito Lebrilla, Ruteja Barve, Vincent Lombard, Bernard Henrissat, Semen Leyn, Dmitry Rodionov, Andrei Osterman, David Hayashi, Alexandra Meynier, Sophie Vinoy, Kyleigh Kirbach, Tara Wilmot, Andrew Heath, Samuel Klein, Michael Barratt, Jeffrey Gordon

Nature 595:91-95 (2021)10.1038/s41586-021-03671-4

2021
Gut microbiome contributions to altered metabolism in a pig model of undernutrition

Hao-Wei Chang, Nathan Mcnulty, Matthew Hibberd, David O'Donnell, Jiye Cheng, Vincent Lombard, Bernard Henrissat, Olga Ilkayeva, Michael Muehlbauer, Christopher Newgard, Michael Barratt, Xi Lin, Jack Odle, Jeffrey Gordon, David O’donnell

Proceedings of the National Academy of Sciences of the United States of America 118:e2024446118 (2021)10.1073/pnas.2024446118

2021
Characterization of three bacterial glycoside hydrolase family 9 endoglucanases with different modular architectures isolated from a compost metagenome

Laure Aymé, Agnès Hébert, Bernard Henrissat, Vincent Lombard, Nathalie Franche, Stéphanie Perret, Etienne Jourdier, Senta Heiss-Blanquet

Biochimica et Biophysica Acta (BBA) - General Subjects 1865:129848 (2021)10.1016/j.bbagen.2021.129848

2021
Genome Features of Asaia sp. W12 Isolated from the Mosquito Anopheles stephensi Reveal Symbiotic Traits

Shicheng Chen, Ting Yu, Nicolas Terrapon, Bernard Henrissat, Edward Walker

Genes 12:752 (2021)10.3390/genes12050752

2021
Strain-level functional variation in the human gut microbiota based on bacterial binding to artificial food particles

Michael Patnode, Janaki Guruge, Juan Castillo, Garret Couture, Vincent Lombard, Nicolas Terrapon, Bernard Henrissat, Carlito Lebrilla, Jeffrey Gordon

Cell Host & Microbe 29:664-673.e5 (2021)10.1016/j.chom.2021.01.007

2021
Characterization of the β-glucuronidase Pn3Pase as the founding member of glycoside hydrolase family GH169

Paeton Wantuch, Satya Jella, Jeremy Duke, Jarrod Mousa, Bernard Henrissat, John Glushka, Fikri Avci

Glycobiology 31:266-274 (2021)10.1093/glycob/cwaa070

2021
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay

Hayat Hage, Shingo Miyauchi, Máté Virágh, Elodie Drula, Byoungnam Min, Delphine Chaduli, David Navarro, Anne Favel, Manon Norest, Laurence Lesage‐meessen, Balázs Bálint, Zsolt Merényi, Laura Eugenio, Emmanuelle Morin, Angel Martínez, Petr Baldrian, Martina Štursová, María Jesús Martínez, Cenek Novotny, Jon Magnuson, Joey Spatafora, Sundy Maurice, Jasmyn Pangilinan, Willian Andreopoulos, Kurt Labutti, Hope Hundley, Hyunsoo Na, Alan Kuo, Kerrie Barry, Anna Lipzen, Bernard Henrissat, Robert Riley, Steven Ahrendt, László Nagy, Igor Grigoriev, Francis Martin, Marie‐noëlle Rosso

Environmental Microbiology (2021)10.1111/1462-2920.15423

2021
Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber

Live Hagen, Charles Brooke, Claire Shaw, Angela Norbeck, Hailan Piao, Magnus Ø. Arntzen, Heather Olson, Alex Copeland, Nancy Isern, Anil Shukla, Simon Roux, Vincent Lombard, Bernard Henrissat, Michelle O’malley, Igor Grigoriev, Susannah Tringe, Roderick Mackie, Ljiljana Pasa-Tolic, Phillip Pope, Matthias Hess

ISME Journal 15:421-434 (2021)10.1038/s41396-020-00769-x

2021
Niche differentiation and evolution of the wood decay machinery in the invasive fungus Serpula lacrymans

Jaqueline Hess, Sudhagar Balasundaram, Renee Bakkemo, Elodie Drula, Bernard Henrissat, Nils Högberg, Daniel Eastwood, Inger Skrede

ISME Journal 15:592-604 (2021)10.1038/s41396-020-00799-5

2021
Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales

Gang Wu, Shingo Miyauchi, Emmanuelle Morin, Alan Kuo, Elodie Drula, Torda Varga, Annegret Kohler, Bang Feng, Yang Cao, Anna Lipzen, Christopher Daum, Hope Hundley, Jasmyn Pangilinan, Jenifer Johnson, Kerrie Barry, Kurt Labutti, Vivian Ng, Steven Ahrendt, Byoungnam Min, In‐geol Choi, Hongjae Park, Jonathan Plett, Jon Magnuson, Joseph Spatafora, László Nagy, Bernard Henrissat, Igor Grigoriev, Zhu‐liang Yang, Jianping Xu, Francis Martin

New Phytologist 10 (2021)10.1111/nph.17858

2021
Multimodularity of a GH10 Xylanase Found in the Termite Gut Metagenome

Haiyang Wu, Eleni Ioannou, Bernard Henrissat, Cédric Montanier, Sophie Bozonnet, Michael O'Donohue, Claire Dumon

Applied and Environmental Microbiology 87 (2021)10.1128/AEM.01714-20

2021
Functional diversity of three tandem C-terminal carbohydrate-binding modules of a β-mannanase

Marie Sofie Møller, Souad El Bouaballati, Bernard Henrissat, Birte Svensson

Journal of Biological Chemistry 296:100638 (2021)10.1016/j.jbc.2021.100638

2021
Identification of the molecular determinants driving the substrate specificity of fungal lytic polysaccharide monooxygenases (LPMOs)

Kristian E.H. Frandsen, Kristian Frandsen, Mireille Haon, Sacha Grisel, Bernard Henrissat, Leila Lo Leggio, Jean-Guy Berrin

Journal of Biological Chemistry 296:100086 (2021)10.1074/jbc.RA120.015545

2021
Identification of Copper-Containing Oxidoreductases in the Secretomes of Three Colletotrichum Species with a Focus on Copper Radical Oxidases for the Biocatalytic Production of Fatty Aldehydes

David Ribeaucourt, Safwan Saker, David Navarro, Bastien Bissaro, Elodie Drula, Lydie Oliveira Correia, Mireille Haon, Sacha Grisel, Nicolas Lapalu, Bernard Henrissat, Richard O’connell, Fanny Lambert, Mickaël Lafond, Jean-Guy Berrin

Applied and Environmental Microbiology 87:e01526-21 (2021)10.1128/AEM.01526-21

2020

2020
Galactosaminogalactan activates the inflammasome to provide host protection

Benoit Briard, Thierry Fontaine, Parimal Samir, David Place, Laetitia Muszkieta, R. Malireddi, Rajendra Karki, Shelbi Christgen, Perrine Bomme, Peter Vogel, Rémi Beau, Emilia Mellado, Oumaima Ibrahim-Granet, Bernard Henrissat, Ravi Kalathur, Cam Robinson, Jean-Paul Latgé, Thirumala-Devi Kanneganti

Nature 588:688-692 (2020)10.1038/s41586-020-2996-z

2020
Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions

Abbot Oghenekaro, Andriy Kovalchuk, Tommaso Raffaello, Susana Camarero, Markus Gressler, Bernard Henrissat, Juna Lee, Mengxia Liu, Angel Martínez, Otto Miettinen, Sirma Mihaltcheva, Jasmyn Pangilinan, Fei Ren, Robert Riley, Francisco Javier Ruiz-Dueñas, Ana Serrano, Michael Thon, Zilan Wen, Zhen Zeng, Kerrie Barry, Igor Grigoriev, Francis Martin, Fred Asiegbu

Scientific Reports 10 (2020)10.1038/s41598-020-62150-4

2020
Metabolism of multiple glycosaminoglycans by Bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus

Didier Ndeh, Arnaud Baslé, Henrik Strahl, Urszula Mcclurgg, Bernard Henrissat, Nicolas Terrapon, Alan Cartmell

Nature Communications 11 (2020)10.1038/s41467-020-14509-4

2020
Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut

Leszek Michalak, John Christian Gaby, Leidy Lagos, Sabina Leanti La Rosa, Torgeir Hvidsten, Catherine Tétard-Jones, William Willats, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Johannes Dröge, Magnus Øverlie Arntzen, Live Heldal Hagen, Margareth Øverland, Phillip Pope, Bjørge Westereng

Nature Communications 11 (2020)10.1038/s41467-020-19585-0

2020
Display of the Human Mucinome With Defined O-Glycans by Gene Engineered Cells

Nason Rebecca, Bull, Christian, Hiren J Joshi, Konstantinidi, Andriana, Renaud Vincentelli, Bernard Henrissat, Vakhrushev, Sergey, Henrik Clausen, Yoshiki Narimatsu

Glycobiology (2020)

2020
A comparative genomics study of 23 Aspergillus species from section Flavi

Inge Kjærbølling, Tammi Vesth, Jens Frisvad, Jane Nybo, Sebastian Theobald, Sara Kildgaard, Thomas Isbrandt Petersen, Alan Kuo, Atsushi Sato, Ellen Lyhne, Martin Kogle, Ad Wiebenga, Roland Kun, Ronnie Lubbers, Miia Mäkelä, Kerrie Barry, Mansi Chovatia, Alicia Clum, Chris Daum, Sajeet Haridas, Guifen He, Kurt Labutti, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Robert Riley, Asaf Salamov, Blake Simmons, Jon Magnuson, Bernard Henrissat, Uffe Mortensen, Thomas Larsen, Ronald de Vries, Igor Grigoriev, Masayuki Machida, Scott Baker, Mikael Andersen

Nature Communications 11 (2020)10.1038/s41467-019-14051-y

2020
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

Shingo Miyauchi, Enikő Kiss, Alan Kuo, Elodie Drula, Annegret Kohler, Marisol Sánchez-García, Emmanuelle Morin, Bill Andreopoulos, Kerrie Barry, Gregory Bonito, Marc Buée, Akiko Carver, Cindy Chen, Nicolas Cichocki, Alicia Clum, David Culley, Pedro Crous, Laure Fauchery, Mariangela Girlanda, Richard Hayes, Zsófia Kéri, Kurt Labutti, Anna Lipzen, Vincent Lombard, Jon Magnuson, François Maillard, Claude Murat, Matt Nolan, Robin Ohm, Jasmyn Pangilinan, Maíra de Freitas Pereira, Silvia Perotto, Martina Peter, Stephanie Pfister, Robert Riley, Yaron Sitrit, J. Benjamin Stielow, Gergely Szöllősi, Lucia Žifčáková, Martina Štursová, Joseph Spatafora, Leho Tedersoo, Lu-Min Vaario, Akiyoshi Yamada, Mi Yan, Pengfei Wang, Jianping Xu, Tom Bruns, Petr Baldrian, Rytas Vilgalys, Christophe Dunand, Bernard Henrissat, Igor Grigoriev, David Hibbett, László Nagy, Francis M. Martin

Nature Communications 11 (2020)10.1038/s41467-020-18795-w

2020
Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity

Francisco Ruiz-Dueñas, José Barrasa, Marisol Sánchez-García, Susana Camarero, Shingo Miyauchi, Ana Serrano, Dolores Linde, Rashid Babiker, Elodie Drula, Iván Ayuso-Fernández, Remedios Pacheco, Guillermo Padilla, Patricia Ferreira, Jorge Barriuso, Harald Kellner, Raúl Castanera, Manuel Alfaro, Lucía Ramirez, Antonio Pisabarro, Robert Riley, Alan Kuo, William Andreopoulos, Kurt Labutti, Jasmyn Pangilinan, Andrew Tritt, Anna Lipzen, Guifen He, Mi Yan, Vivian Ng, Igor Grigoriev, Daniel Cullen, Marie-Noëlle Rosso, Bernard Henrissat, David Hibbett, Angel Martínez

Molecular Biology and Evolution 38:1428-1446 (2020)10.1093/molbev/msaa301

2020
Characterization of the CAZy Repertoire from the Marine-Derived Fungus Stemphylium lucomagnoense in Relation to Saline Conditions

Wissal Ben Ali, David Navarro, Abhishek Kumar, Elodie Drula, Annick Turbé-Doan, Lydie Oliveira Correia, Stéphanie Baumberger, Emmanuel Bertrand, Craig Faulds, Bernard Henrissat, Giuliano Sciara, Tahar Mechichi, Eric Record

Marine drugs 18:1-21 (2020)10.3390/md18090461

2020
Utilization of Galectins by Pathogens for Infection

Diyoly Ayona, Pierre-Edouard Fournier, Bernard Henrissat, Benoit Desnues

Frontiers in Immunology 11 (2020)10.3389/fimmu.2020.01877

2020
A mutation map for human glycoside hydrolase genes

Lars Hansen, Diab Husein, Birthe Gericke, Torben Hansen, Oluf Pedersen, Mitali Tambe, Hudson Freeze, Hassan Naim, Bernard Henrissat, Hans Wandall, Henrik Clausen, Eric Bennett

Glycobiology 30:500-515 (2020)10.1093/glycob/cwaa010

2020
Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus

Shingo Miyauchi, Hayat Hage, Elodie Drula, Laurence Lesage-Meessen, Jean-Guy Berrin, David Navarro, Anne Favel, Delphine Chaduli, Sacha Grisel, Mireille Haon, François Piumi, Anthony Levasseur, Anne Lomascolo, Steven Ahrendt, Kerrie Barry, Kurt Labutti, Didier Chevret, Chris Daum, Jérôme Mariette, Christophe Klopp, Daniel Cullen, Ronald de Vries, Allen Gathman, Matthieu Hainaut, Bernard Henrissat, Kristiina Hildén, Ursula Kues, Walt Lilly, Anna Lipzen, Miia Mäkelä, Angel Martinez, Melanie Morel-Rouhier, Emmanuelle Morin, Jasmyn Pangilinan, Arthur Ram, Han Wösten, Francisco Ruiz-Dueñas, Robert Riley, Eric Record, Igor Grigoriev, Marie-Noelle Rosso

DNA Research (2020)10.1093/dnares/dsaa011

2020
101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens

S. Haridas, R. Albert, M. Binder, J. Bloem, K. Labutti, A. Salamov, B. Andreopoulos, S.E. Baker, K. Barry, G. Bills, B.H. Bluhm, C. Cannon, R. Castanera, D.E. Culley, C. Daum, D. Ezra, J.B. González, Bernard Henrissat, A. Kuo, C. Liang, A. Lipzen, F. Lutzoni, J. Magnuson, S.J. Mondo, M. Nolan, R.A. Ohm, J. Pangilinan, H.-J. Park, L. Ramírez, M. Alfaro, H. Sun, A. Tritt, Y. Yoshinaga, L.-H. Zwiers, B.G. Turgeon, S.B. Goodwin, J.W. Spatafora, P.W. Crous, I.V. Grigoriev

Studies in Mycology 96:141-153 (2020)10.1016/j.simyco.2020.01.003

2020
Infection cushions of Fusarium graminearum are fungal arsenals for wheat infection

Michael Mentges, Anika Glasenapp, Marike Boenisch, Sascha Malz, Bernard Henrissat, Rasmus J.N. Frandsen, Ulrich Guldener, Martin Münsterkötter, Jörg Bormann, Marc‐henri Lebrun, Wilhelm Schäfer, Ana Lilia Martinez‐rocha

Molecular Plant Pathology 21:1070-1087 (2020)10.1111/mpp.12960

2020
Discovery of a Fungal Copper Radical Oxidase with High Catalytic Efficiency toward 5-Hydroxymethylfurfural and Benzyl Alcohols for Bioprocessing

Yann Mathieu, Wendy Offen, Stephanie Forget, Luisa Ciano, Alexander Holm Viborg, Elena Blagova, Bernard Henrissat, Paul Walton, Gideon Davies, Harry Brumer

ACS Catalysis 10:3042-3058 (2020)10.1021/acscatal.9b04727

2020
Discovery of hyperstable carbohydrate‐active enzymes through metagenomics of extreme environments

Andrea Strazzulli, Beatrice Cobucci‐ponzano, Roberta Iacono, Rosa Giglio, Luisa Maurelli, Nicola Curci, Corinna Schiano‐di‐cola, Annalisa Santangelo, Patrizia Contursi, Vincent Lombard, Bernard Henrissat, Federico Lauro, Carlos M.G.A. Fontes, Marco Moracci

FEBS Journal 287:1116-1137 (2020)10.1111/febs.15080

2020
Analysis of the diversity of the glycoside hydrolase family 130 in mammal gut microbiomes reveals a novel mannoside-phosphorylase function

Ao Li, Elisabeth Laville, Laurence Tarquis, Vincent Lombard, David Ropartz, Nicolas Terrapon, Bernard Henrissat, David Guieysse, Jeremy Esque, Julien Durand, Diego Morgavi, Gabrielle Potocki-Veronese

Microbial Genomics 6:1-14 (2020)10.1099/mgen.0.000404

2020
A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

Junhua Li, Huanzi Zhong, Yuliaxis Ramayo-Caldas, Nicolas Terrapon, Vincent Lombard, Gabrielle Potocki-Veronese, Jordi Estellé, Milka Popova, Ziyi Yang, Hui Zhang, Fang Li, Shanmei Tang, Fangming Yang, Weineng Chen, Bing Chen, Jiyang Li, Jing Guo, Cécile Martin, Emmanuelle Maguin, Xun Xu, Huanming Yang, Jian Wang, Lise Madsen, Karsten Kristiansen, Bernard Henrissat, Stanislav Ehrlich, Diego Morgavi

GigaScience 9:1-15 (2020)10.1093/gigascience/giaa057

2020
Investigating host-microbiome interactions by droplet based microfluidics

Alexandra Tauzin, Mariana Pereira, Liisa van Vliet, Pierre-Yves Colin, Elisabeth Laville, Jeremy Esque, Sandrine Laguerre, Bernard Henrissat, Nicolas Terrapon, Vincent Lombard, Marion Leclerc, Joël Doré, Florian Hollfelder, Gabrielle Potocki-Veronese

Microbiome 8 (2020)10.1186/s40168-020-00911-z

2020
A fungal family of lytic polysaccharide monooxygenase-like copper proteins

Aurore Labourel, Kristian Frandsen, Feng Zhang, Nicolas Brouilly, Sacha Grisel, Mireille Haon, Luisa Ciano, David Ropartz, Mathieu Fanuel, Francis Martin, David Navarro, Marie-Noelle Rosso, Tobias Tandrup, Bastien Bissaro, Katja S. Johansen, Anastasia Zerva, Paul H. Walton, Bernard Henrissat, Leila Lo Leggio, Jean-Guy Berrin

Nature Chemical Biology 16:345-350 (2020)10.1038/s41589-019-0438-8

2020
At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions

Francesco Venice, Stefano Ghignone, Alessandra Salvioli Di Fossalunga, Joelle Amselem, Mara Novero, Xie Xianan, Kinga Sędzielewska Toro, Emmanuelle Morin, Anna Lipzen, Igor V. Grigoriev, Bernard Henrissat, Francis M. Martin, Paola Bonfante

Environmental Microbiology 22:122-141 (2020)10.1111/1462-2920.14827

2019

2019
Trichoderma reesei Dehydrogenase, a Pyrroloquinoline Quinone-Dependent Member of Auxiliary Activity Family 12 of the Carbohydrate-Active Enzymes Database: Functional and Structural Characterization

Annick Turbé-Doan, Eric Record, Vincent Lombard, Rajender Kumar, Anthony Levasseur, Bernard Henrissat, Marie-Line Garron

Applied and Environmental Microbiology 85:15 p. (2019)10.1128/AEM.00964-19

2019
Mycobacterium ulcerans mycolactones-fungi crosstalking

Nassim Hammoudi, Carole Cassagne, Nicholas Armstrong, Stéphane Ranque, Bernard Henrissat, Michel Drancourt, Amar Bouam

Scientific Reports 9 (2019)10.1038/s41598-019-39927-3

2019
The continuing expansion of CAZymes and their families

Marie-Line Garron, Bernard Henrissat

Current Opinion in Chemical Biology 53:82-87 (2019)10.1016/j.cbpa.2019.08.004

2019
A metagenomics investigation of carbohydrate-active enzymes along the goat and camel intestinal tract

Saad Al-Masaudi, Abdessamad El Kaoutari, Elodie Drula, Elrashdy Redwan, Vincent Lombard, Bernard Henrissat

International Microbiology 22:429-435 (2019)10.1007/s10123-019-00068-2

2019
Subfamily delineation of the evolutionarily diverse Glycoside Hydrolase Family 16 (GH16) provides a roadmap for functional glycogenomics

Alexander Holm Viborg, Nicolas Terrapon, Vincent Lombard, Gurvan Michel, Mirjam Czjzek, Bernard Henrissat, Harry Brumer

Journal of Biological Chemistry (2019)10.1074/jbc.RA119.010619

2019
Inverting family GH156 sialidases define an unusual catalytic motif for glycosidase action

Pedro Bule, Léa Chuzel, Elena Blagova, Liang Wu, Melissa Gray, Bernard Henrissat, Erdmann Rapp, Carolyn Bertozzi, Christopher Taron, Gideon Davies

Nature Communications 10 (2019)10.1038/s41467-019-12684-7

2019
Comparative genomic analyses reveal diverse virulence factors and antimicrobial resistance mechanisms in clinical Elizabethkingia meningoseptica strains

Jochen Blom, Nicolas Terrapon, Shicheng Chen, Marty Soehnlen, Jochen Id, Nicolas Terrapon, Bernard Henrissat, Edward Walker

PLoS ONE 14:e0222648 (2019)10.1371/journal.pone.0222648

2019
Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613

Hongjae Park, Byoungnam Min, Yeongseon Jang, Jungyeon Kim, Anna Lipzen, Aditi Sharma, Bill Andreopoulos, Jenifer Johnson, Robert Riley, Joseph Spatafora, Bernard Henrissat, Kyoung Heon Kim, Igor Grigoriev, Jae-Jin Kim, In-Geol Choi

Applied Microbiology and Biotechnology 103:8145-8155 (2019)10.1007/s00253-019-10089-6

2019
Updates to the Symbol Nomenclature for Glycans guidelines

Sriram Neelamegham, Kiyoko Aoki-Kinoshita, Evan Bolton, Martin Frank, Frederique Lisacek, Thomas Lütteke, Noel O'Boyle, Nicolle Packer, Pamela Stanley, Philip Toukach, Ajit Varki, Robert Woods, Noel O’boyle, Alan Darvill, Anne Dell, Bernard Henrissat, Carolyn Bertozzi, Gerald Hart, Hisashi Narimatsu, Hudson Freeze, Issaku Yamada, James Paulson, James Prestegard, Jamey Marth, J Vliegenthart, Marilynn Etzler, Markus Aebi, Minoru Kanehisa, Naoyuki Taniguchi, Nathan Edwards, Pauline Rudd, Peter Seeberger, Raja Mazumder, Rene Ranzinger, Richard Cummings, Ronald Schnaar, Serge Perez, Stuart Kornfeld, Taroh Kinoshita, William York, Yuriy Knirel

Glycobiology 29:620-624 (2019)10.1093/glycob/cwz045

2019
Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data

Vikash Kumar, Matthieu Hainaut, Nicolas Delhomme, Chanaka Mannapperuma, Peter Immerzeel, Nathaniel Street, Bernard Henrissat, Ewa Mellerowicz

ACS Infectious Diseases 5:1609-1623 (2019)10.1021/acsinfecdis.9b00179

2019
The Cellulosome Paradigm in An Extreme Alkaline Environment

Paripok Phitsuwan, Sarah Moraïs, Bareket Dassa, Bernard Henrissat, Edward Bayer

Microorganisms 7:347 (2019)10.3390/microorganisms7090347

2019
Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74

Grégory Arnal, Peter Stogios, Jathavan Asohan, Mohamed Attia, Tatiana Skarina, Alexander Holm Viborg, Bernard Henrissat, Alexei Savchenko, Harry Brumer

Journal of Biological Chemistry 294:13233-13247 (2019)10.1074/jbc.RA119.009861

2019
Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans

Michael Patnode, Zachary Beller, Nathan Han, Jiye Cheng, Samantha Peters, Nicolas Terrapon, Bernard Henrissat, Sophie Le Gall, Luc Saulnier, David Hayashi, Alexandra Meynier, Sophie Vinoy, Richard Giannone, Robert Hettich, Jeffrey Gordon

Cell 179:59-73.e13 (2019)10.1016/j.cell.2019.08.011

2019
Fungal ecological strategies reflected in gene transcription ‐ a case study of two litter decomposers

Florian Barbi, Annegret Kohler, Kerrie Barry, Preetisri Baskaran, Chris Daum, Laure Fauchery, Katarina Ihrmark, Alan Kuo, Kurt Labutti, Anna Lipzen, Emmanuelle Morin, Igor Grigoriev, Bernard Henrissat, Björn Lindahl, Francis Martin

Environmental Microbiology 22:1089-1103 (2019)10.1111/1462-2920.14873

2019
Effects of microbiota-directed foods in gnotobiotic animals and undernourished children

Jeanette Gehrig, Siddarth Venkatesh, Hao-Wei Chang, Matthew Hibberd, Vanderlene Kung, Jiye Cheng, Robert Chen, Sathish Subramanian, Carrie Cowardin, Martin Meier, David O'Donnell, Michael Talcott, Larry Spears, Clay Semenkovich, Bernard Henrissat, Richard Giannone, Robert Hettich, Olga Ilkayeva, Michael Muehlbauer, Christopher Newgard, Christopher Sawyer, Richard Head, Dmitry Rodionov, Aleksandr Arzamasov, Semen Leyn, Andrei Osterman, Iqbal Hossain, Munirul Islam, Nuzhat Choudhury, Shafiqul Sarker, Sayeeda Huq, Imteaz Mahmud, Ishita Mostafa, Mustafa Mahfuz, Michael Barratt, Tahmeed Ahmed, Jeffrey Gordon

Science 365 (2019)10.1126/science.aau4732

2019
Comparative genomics reveals unique wood‐decay strategies and fruiting body development in the Schizophyllaceae

Neha Sahu, Krisztina Krizsán, Balázs Bálint, Gabor Kovacs, Brigitta Kiss, Judit Cseklye, Elodie Drula, Bernard Henrissat, István Nagy, Mansi Chovatia, Catherine Adam, Kurt Labutti, Anna Lipzen, Robert Riley, Igor Grigoriev, Laszlo Nagy

New Phytologist 224:902-915 (2019)10.1111/nph.16032

2019
Genomic insights from Monoglobus pectinilyticus: a pectin-degrading specialist bacterium in the human colon

Caroline Kim, Genelle Healey, William Kelly, Mark Patchett, Zoe Jordens, Gerald Tannock, Ian Sims, Tracey Bell, Duncan Hedderley, Bernard Henrissat, Douglas Rosendale

ISME Journal 13:1437-1456 (2019)10.1038/s41396-019-0363-6

2019
Bacteroidetes use thousands of enzyme combinations to break down glycans

Pascal Lapébie, Vincent Lombard, Elodie Drula, Nicolas Terrapon, Bernard Henrissat

Nature Communications 10:1 (2019)10.1038/s41467-019-10068-5

2019
Unraveling the subtleties of β-(1→3)-glucan phosphorylase specificity in the GH94, GH149, and GH161 glycoside hydrolase families

Sakonwan Kuhaudomlarp, Giulia Pergolizzi, Nicola Patron, Bernard Henrissat, Robert Field

Journal of Biological Chemistry 294:6483-6493 (2019)10.1074/jbc.RA119.007712

2019
Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space

William Helbert, Laurent Poulet, Sophie Drouillard, Sophie Mathieu, Mélanie Loiodice, Marie Couturier, Vincent Lombard, Nicolas Terrapon, Jeremy Turchetto, Vincent Vincentelli, Bernard Henrissat

Proceedings of the National Academy of Sciences of the United States of America 116:6063-6068 (2019)10.1073/pnas.1815791116

2019
Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi

Krisztina Krizsán, Éva Almási, Zsolt Merényi, Neha Sahu, Máté Virágh, Tamás Kószó, Stephen Mondo, Brigitta Kiss, Balázs Bálint, Ursula Kües, Kerrie Barry, Judit Cseklye, Botond Hegedüs, Bernard Henrissat, Jenifer Johnson, Anna Lipzen, Robin Ohm, István Nagy, Jasmyn Pangilinan, Juying Yan, Yi Xiong, Igor Grigoriev, David Hibbett, László Nagy

Proceedings of the National Academy of Sciences of the United States of America 116:7409-7418 (2019)10.1073/pnas.1817822116

2019
AA16, a new Lytic Polysaccharide Monooxygenase family identified in fungal secretomes

Camille Filiatrault-Chastel, David Navarro, Mireille Haon, Sacha Grisel, Isabelle Herpoël-Gimbert, Didier Chevret, Mathieu Fanuel, Bernard Henrissat, Senta Heiss-Blanquet, Antoine Margeot, Jean-Guy Berrin

Biotechnology for Biofuels 12 (2019)10.1186/s13068-019-1394-y

2019
Evolution and comparative genomics of the most common Trichoderma species

Christian P. Kubicek, Andrei S. Steindorff, Komal Chenthamara, Gelsomina Manganiello, Bernard Henrissat, Jian Zhang, Feng Cai, Alexey G. Kopchinskiy, Eva M. Kubicek, Alan Kuo, Riccardo Baroncelli, Sabrina Sarrocco, Eliane Ferreira Noronha, Giovanni Vannacci, Qirong Shen, Igor V. Grigoriev, Irina S. Druzhinina

BMC Genomics 20 (2019)10.1186/s12864-019-5680-7

2019
Sucrose 6F-phosphate phosphorylase: a novel insight in the human gut microbiome

Alexandra Tauzin, Laetitia Bruel, Elisabeth Laville, Cendrine Nicoletti, David Navarro, Bernard Henrissat, Josette Perrier, Gabrielle Potocki-Veronese, Thierry Giardina, Mickael Lafond

Microbial Genomics np (2019)10.1099/mgen.0.000253

2019
Investigating Host Microbiota Relationships Through Functional Metagenomics

Elisabeth Laville, Josette Perrier, Nada Bejar, Marc Maresca, Jeremy Esque, Alexandra Tauzin, Emma Bouhajja, Marion Leclerc, Elodie Drula, Bernard Henrissat, Stephane Berdah, Eric Di Pasquale, Patrick Robe, Gabrielle Potocki-Veronese

Frontiers in Microbiology 10:12 p. (2019)10.3389/fmicb.2019.01286

2019
A subfamily roadmap for functional glycogenomics of the evolutionarily diverse Glycoside Hydrolase Family 16 (GH16)

Alexander Holm Viborg, Nicolas Terrapon, Vincent Lombard, Gurvan Michel, Mirjam Czjzek, Bernard Henrissat, Harry Brumer

Journal of Biological Chemistry 294:15973-15986 (2019)10.1074/jbc.RA119.010619

2019
Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data

Vikash Kumar, Matthieu Hainaut, Nicolas Delhomme, Chanaka Mannapperuma, Peter Immerzeel, Nathaniel R. Street, Bernard Henrissat, Ewa J. Mellerowicz

Plant Journal (2019)10.1111/tpj.14417

2019
From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus

Benoit Kunath, Francesco Delogu, Adrian Naas, Magnus Ø. Arntzen, Vincent Eijsink, Bernard Henrissat, Torgeir Hvidsten, Philippe B. Pope

ISME Journal 13:603-617 (2019)10.1038/s41396-018-0290-y

2019
Broad‐specificity GH131 β‐glucanases are a hallmark of Fungi and Oomycetes that colonise plants

Georgios Anasontzis, Marc-Henri Lebrun, Mireille Haon, Charlotte Champion, Annegret Kohler, Nicolas Lenfant, Francis Martin, Richard O'Connell, Robert Riley, Igor V. Grigoriev, Bernard Henrissat, Jean-Guy Berrin, Marie-Noelle Rosso

Environmental Microbiology np (2019)10.1111/1462-2920.14596

2019
Insights into an unusual auxiliary activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases

Kristian Frandsen, Morten Tovborg, Christian Jørgensen, Nikolaj Spodsberg, Marie-Noelle Rosso, Glyn R. Hemsworth, Elspeth F. Garman, Geoffrey W. Grime, Jens-Christian N. Poulsen, Tanveer S. Batth, Shingo Miyauchi, Anna Lipzen, Chris Daum, Igor V. Grigoriev, Katja S Johansen, Bernard Henrissat, Jean-Guy Berrin, Leila Lo Leggio

Journal of Biological Chemistry 294:17117-17130 (2019)10.1074/jbc.RA119.009223

2019
Multi-omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring

Hao Tan, Annegret Kohler, Renyun Miao, Tianhai Liu, Qiang Zhang, Bo Zhang, Lin Jiang, Yong Wang, Liyuan Xie, Jie Tang, Xiaolin Li, Lixu Liu, Igor V Grigoriev, Chris Daum, Kurt Labutti, Anna Lipzen, Alan Kuo, Emmanuelle Morin, Elodie Drula, Bernard Henrissat, Bo Wang, Zhongqian Huang, Bingcheng Gan, Weihong Peng, Francis Martin

Environmental Microbiology 21:3909-3926 (2019)10.1111/1462-2920.14741

2019
Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina

Emmanuelle Morin, Shingo Miyauchi, Hélène San Clemente, Eric C. H. Chen, Adrian Pelin, Ivan de la Providencia, Steve Ndikumana, Denis Beaudet, Matthieu Hainaut, Elodie Drula, Alan Kuo, Nianwu Tang, Sébastien Roy, Julie Viala, Bernard Henrissat, Igor V Grigoriev, Nicolas Corradi, Christophe Roux, Francis M. Martin

New Phytologist 222:1584-1598 (2019)10.1111/nph.15687

2018

2018
Proteomic Dissection of the Cellulolytic Machineries Used by Soil-Dwelling Bacteroidetes

Marcel Taillefer, Magnus Arntzen, Bernard Henrissat, Phillip Pope, Johan Larsbrink

mSystems 3 (2018)10.1128/mSystems.00240-18

2018
Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids

Ugo Cenci, Shannon Sibbald, Bruce Curtis, Ryoma Kamikawa, Laura Eme, Daniel Moog, Bernard Henrissat, Eric Marechal, Malika Chabi, Christophe Djemiel, Andrew Roger, Eunsoo Kim, John Archibald

BMC Biology 16:137 (2018)10.1186/s12915-018-0593-5

2018
Ancient acquisition of “alginate utilization loci” by human gut microbiota

Sophie Mathieu, Mélanie Touvrey-Loiodice, Laurent Poulet, Sophie Drouillard, Renaud Vincentelli, Bernard Henrissat, Gudmund Skjåk-Bræk, William Helbert

Scientific Reports 8:8075 (2018)10.1038/s41598-018-26104-1

2018
An ancient family of lytic polysaccharide monooxygenases with roles in arthropod development and biomass digestion

Federico Sabbadin, Glyn Hemsworth, Luisa Ciano, Bernard Henrissat, Paul Dupree, Theodora Tryfona, Rita Marques, Sean Sweeney, Katrin Besser, Luisa Elias, Giovanna Pesante, Yi Li, Adam Dowle, Rachel Bates, Leonardo Gomez, Rachael Simister, Gideon Davies, Paul Walton, Neil Bruce, Simon Mcqueen-Mason

Nature Communications 9:756 (2018)10.1038/s41467-018-03142-x

2018
Leveraging single-cell genomics to expand the fungal tree of life

Steven Ahrendt, C Alisha Quandt, Doina Ciobanu, Alicia Clum, Asaf Salamov, Bill Andreopoulos, Jan-Fang Cheng, Tanja Woyke, Adrian Pelin, Bernard Henrissat, Nicole Reynolds, Gerald Benny, Matthew Smith, Timothy James, Igor Grigoriev

Nature Microbiology 3:1417-1428 (2018)10.1038/s41564-018-0261-0

2018
Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi

Dániel Knapp, Julianna Németh, Kerrie Barry, Matt Hainaut, Bernard Henrissat, Jenifer Johnson, Alan Kuo, Joanne Hui Ping Lim, Anna Lipzen, Matt Nolan, Robin Ohm, László Tamás, Igor Grigoriev, Joseph Spatafora, Laszlo Nagy, Gabor Kovacs, Matthieu Hainaut

Scientific Reports 8:6321 (2018)10.1038/s41598-018-24686-4

2018
Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times

Xiaoyu Liang, Jason Whitham, Evert Holwerda, Xiongjun Shao, Liang Tian, Yu-Wei Wu, Vincent Lombard, Bernard Henrissat, Dawn Klingeman, Zamin Yang, Mircea Podar, Tom Richard, James Elkins, Steven Brown, Lee Lynd

Biotechnology for Biofuels 11:243 (2018)10.1186/s13068-018-1238-1

2018
Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri

Tammi C. Vesth, Jane Nybo, Sebastian Theobald, Jens Frisvad, Thomas Larsen, Kristian Nielsen, Jakob Hoof, Julian Brandl, Asaf Salamov, Robert Riley, John Gladden, Pallavi Phatale, Morten Nielsen, Ellen Lyhne, Martin Kogle, Kimchi Strasser, Erin Mcdonnell, Kerrie Barry, Alicia Clum, Cindy Chen, Kurt Labutti, Sajeet Haridas, Matt Nolan, Laura Sandor, Alan Kuo, Anna Lipzen, Matthieu Hainaut, Elodie Drula, Adrian Tsang, Jon Magnuson, Bernard Henrissat, Ad Wiebenga, Blake Simmons, Miia Mäkelä, Ronald de Vries, Igor Grigoriev, Uffe Mortensen, Scott Baker, Mikael Handersen

Nature Genetics 50:1688-1695 (2018)10.1038/s41588-018-0246-1

2018
De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads

David Eccles, Jodie Chandler, Mali Camberis, Bernard Henrissat, Sergey Koren, Graham Le Gros, Jonathan Ewbank

BMC Biology 16:6 (2018)10.1186/s12915-017-0473-4

2018
The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet

Alexey Grum-Grzhimaylo, Daniel Falkoski, Joost van den Heuvel, Claudio Valero-Jiménez, Byoungnam Min, In-Geol Choi, Anna Lipzen, Chris Daum, Duur Aanen, Adrian Tsang, Bernard Henrissat, Elena Bilanenko, Ronald de Vries, Jan van Kan, Igor Grigoriev, Alfons Debets

Molecular Ecology 27:4808-4819 (2018)10.1111/mec.14912

2018
Analysis of carbohydrate-active enzymes in Thermogemmatispora sp. strain T81 reveals carbohydrate degradation ability

Atilio Tomazini, Sadhana Lal, Riffat Munir, Matthew Stott, Bernard Henrissat, Igor Polikarpov, Richard Sparling, David Levin

Canadian Journal of Microbiology 64:992-1003 (2018)10.1139/cjm-2018-0336

2018
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

Yoann Seeleuthner, Samuel Mondy, Vincent Lombard, Quentin Carradec, Eric Pelletier, Marc Wessner, Jade Leconte, Jean-François Mangot, Julie Poulain, Karine Labadie, Ramiro Logares, Shinichi Sunagawa, Véronique de Berardinis, Marcel Salanoubat, Céline Dimier, Stefanie Kandels-Lewis, Marc Picheral, Sarah Searson, Stéphane Pesant, Nicole Poulton, Ramunas Stepanauskas, Peer Bork, Chris Bowler, Pascal Hingamp, Matthew Sullivan, Daniele Iudicone, Ramon Massana, Jean-Marc Aury, Bernard Henrissat, Eric Karsenti, Olivier Jaillon, Mike Sieracki, Colomban de Vargas, Patrick Wincker, Silvia G. Acinas, Emmanuel Boss, Michael Follows, Gabriel Gorsky, Nigel Grimsley, Lee Karp-Boss, Uros Krzic, Fabrice Not, Jeroen Raes, Emmanuel G. Reynaud, Christian Sardet, Sabrina Speich, Lars Stemmann, Jean Weissenbach, Didier Velayoudon

Nature Communications 9:310 (2018)10.1038/s41467-017-02235-3

2018
Genome Sequencing and analyses of Two Marine Fungi from the North Sea Unraveled a Plethora of Novel Biosynthetic Gene Clusters

Abhishek Kumar, Jens Laurids Sørensen, Frederik Teilfeldt Hansen, Mikko Arvas, Muhammad Fahad Syed, Lara Hassan, J Philipp Benz, Eric Record, Bernard Henrissat, Stefanie Pöggeler, Frank Kempken, J. Philipp Benz

Scientific Reports 8:10187 (2018)10.1038/s41598-018-28473-z

2018
A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)

Sean Ma, Yolanda Chen, Martin Ma, Joshua Benoit, Anita Bhandari, Julia Bowsher, Kristian Brevik, Kaat Cappelle, Mei-Ju Li, Anna Childers, Christopher Li, Olivier Christiaens, Justin Ma, Elise Didion, Elena Elpidina, Patamarerk Engsontia, Markus Ma, Inmaculada García-Robles, Richard Gibbs, Chandan Goswami, Alessandro Grapputo, Kristina Gruden, Marcin Ma, Bernard Ma, Emily Jennings, Jeffery Jones, Megha Kalsi, Sher Khan, Abhishek Kumar, Fei Li, Vincent Ma, Xingzhou Ma, Alex Martynov, Nicholas Miller, Robert Mitchell, Monica Muñoz-Torres, Anna Muszewska, Brenda Oppert, Subba Reddy Palli, Kristen Panfilio, Yannick Pauchet, Lindsey Perkin, Marko Petek, Monica Poelchau, Eric Record, Joseph Rinehart, Hugh Robertson, Andrew Rosendale, Victor Ruiz-Arroyo, Guy Smagghe, Zsofia Szendrei, Gregg Thomas, Alex Torson, Iris Vargas Jentzsch, Matthew Weirauch, Ashley Yates, George Yocum, June-Sun Yoon, Stephen Richards, Sean Schoville, Martin Andersson, Mei-Ju Chen, Christopher Childers, Justin Clements, Markus Friedrich, Marcin Grynberg, Bernard Henrissat, Vincent Lombard, Alexander Ma, Lindsey Li, Marko Ma, Robert Robertson, Gregg W.C. Thomas, Matthew Ma, Richard Richards

Scientific Reports 8:1931 (2018)10.1038/s41598-018-20154-1

2018
Functional metagenomics identifies an exosialidase with an inverting catalytic mechanism that defines a new glycoside hydrolase family (GH156)

Léa Chuzel, Mehul Ganatra, Erdmann Rapp, Bernard Henrissat, Christopher Taron

Journal of Biological Chemistry 293:18138-18150 (2018)10.1074/jbc.RA118.003302

2018
A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation

Alan Cartmell, Li Muñoz-Muñoz, Jonathon Briggs, Didier Ndeh, Elisabeth Lowe, Arnaud Basle, Nicolas Terrapon, Katherine Stott, Tiaan Heunis, Joe Gray, Li Yu, Paul Dupree, Pearl Fernandes, Sayali Shah, Spencer Williams, Aurore Labourel, Matthias Trost, Bernard Henrissat, Harry Gilbert, Jose Munoz-Munoz

Nature Microbiology 3:1314-1326 (2018)10.1038/s41564-018-0258-8

2018
Rapid Divergence of Genome Architectures Following the Origin of an Ectomycorrhizal Symbiosis in the Genus Amanita

Jaqueline Hess, Inger Skrede, Maryam Chaib de Mares, Matthieu Hainaut, Bernard Henrissat, Anne Pringle

Molecular Biology and Evolution 35:2786-2804 (2018)10.1093/molbev/msy179

2018
Metagenomic Assembly and Prokaryotic Metagenome-Assembled Genome Sequences from the Northern Gulf of Mexico “Dead Zone”

J Cameron Thrash, Brett Baker, Kiley Seitz, Ben Temperton, Lauren Gillies Campbell, Nancy Rabalais, Bernard Henrissat, Olivia Mason, David Baltrus

Microbiology Resource Announcements 7:1-3 (2018)10.1128/MRA.01033-18

2018
Broad Genomic Sampling Reveals a Smut Pathogenic Ancestry of the Fungal Clade Ustilaginomycotina

Teeratas Kijpornyongpan, Stephen Mondo, Kerrie Barry, Laura Sandor, Juna Lee, Anna Lipzen, Jasmyn Pangilinan, Kurt Labutti, Matthieu Hainaut, Bernard Henrissat, Igor Grigoriev, Joseph Spatafora, M Catherine Aime, Fabia Ursula Battistuzzi

Molecular Biology and Evolution 35:1840-1854 (2018)10.1093/molbev/msy072

2018
Production of α-1,3-L-arabinofuranosidase active on substituted xylan does not improve compost degradation by Agaricus bisporus

Aurin Vos, Edita Jurak, Peter de Gijsel, Robin Ohm, Bernard Henrissat, Luis Lugones, Mirjam Kabel, Han Wösten

PLoS ONE 13:e0201090 (2018)10.1371/journal.pone.0201090

2018
Talaromyces borbonicus , sp. nov., a novel fungus from biodegraded Arundo donax with potential abilities in lignocellulose conversion

Simona Varriale, Jos Houbraken, Zoraide Granchi, Olimpia Pepe, Gabriella Cerullo, Valeria Ventorino, Thomas Chin-A-Woeng, Martin Meijer, Robert Riley, Igor Grigoriev, Bernard Henrissat, Ronald de Vries, Vincenza Faraco

Mycologia 110:316-324 (2018)10.1080/00275514.2018.1456835

2018
Glycosyltransferase genes that cause monogenic congenital disorders of glycosylation are distinct from glycosyltransferase genes associated with complex diseases

Hiren Joshi, Lars Hansen, Yoshiki Narimatsu, Hudson Freeze, Bernard Henrissat, Eric Bennett, Hans Wandall, Henrik Clausen, Katrine Schjoldager

Glycobiology 28:284-294 (2018)10.1093/glycob/cwy015

2018
Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts

Irina Druzhinina, Komal Chenthamara, Jian Zhang, Lea Atanasova, Dongqing Yang, Youzhi Miao, Mohammad Rahimi, Marica Grujic, Feng Cai, Shadi Pourmehdi, Kamariah Abu Salim, Carina Pretzer, Alexey Kopchinskiy, Bernard Henrissat, Alan Kuo, Hope Hundley, Mei Wang, Andrea Aerts, Asaf Salamov, Anna Lipzen, Kurt Labutti, Kerrie Barry, Igor Grigoriev, Qirong Shen, Christian Kubicek

PLoS Genetics 14:e1007322 (2018)10.1371/journal.pgen.1007322

2018
Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga

Miia Mäkelä, Mao Peng, Zoraide Granchi, Thomas Chin-A-Woeng, Rosa Hegi, Sake van Pelt, Steven Ahrendt, Robert Riley, Matthieu Hainaut, Bernard Henrissat, Igor Grigoriev, Ronald de Vries, Kristiina Hildén

Genome Announcements 6:1414-1431 (2018)10.1128/genomeA.01414-17

2018
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection

Rekha Seshadri, Sinead Leahy, Graeme Attwood, Koon Hoong Teh, Suzanne Lambie, Adrian Cookson, Emiley Eloe-Fadrosh, Georgios Pavlopoulos, Michalis Hadjithomas, Neha Varghese, David Páez-Espino, Rechelle Perry, Gemma Henderson, Christopher Creevey, Nicolas Terrapon, Pascal Lapébie, Elodie Drula, Vincent Lombard, Edward Rubin, Nikos Kyrpides, Bernard Henrissat, Tanja Woyke, Natalia Ivanova, William Kelly, Nikola Palevich, Peter Janssen, Ron Ronimus, Samantha Noel, Priya Soni, Kerri Reilly, Todd Atherly, Cherie Ziemer, Andre-Denis Wright, Suzanne Ishaq, Michael Cotta, Stephanie Thompson, Katie Crosley, Nest Mckain, R John Wallace, Harry Flint, Jennifer Martin, Robert Forster, Robert Gruninger, Tim Mcallister, Rosalind Gilbert, Diane Ouwerkerk, Athol Klieve, Rafat Al Jassim, Stuart Denman, Chris Mcsweeney, Carly Rosewarne, Satoshi Koike, Yasuo Kobayashi, Makoto Mitsumori, Takumi Shinkai, Silvio Cravero, María Cerón Cucchi, Chris Creevey

Nature Biotechnology 36:359-367 (2018)10.1038/nbt.4110

2018
Identification of Euglena gracilis β-1,3-glucan phosphorylase and establishment of a new glycoside hydrolase (GH) family GH149

Sakonwan Kuhaudomlarp, Nicola Patron, Bernard Henrissat, Martin Rejzek, Gerhard Saalbach, Robert Field

Journal of Biological Chemistry 293:2865-2876 (2018)10.1074/jbc.RA117.000936

2018
The ectomycorrhizal basidiomycete Laccaria bicolor releases a secreted β-1,4 endoglucanase that plays a key role in symbiosis development

Feng Zhang, George Anasontzis, Aurore Labourel, Charlotte Champion, Mireille Haon, Minna Kemppainen, Carine Commun, Alejandro Pardo, Claire Veneault-Fourrey, Annegret Kohler, Marie-Noelle Rosso, Bernard Henrissat, Jean-Guy Berrin, Francis Martin

New Phytologist 220:1309-1321 (2018)10.1111/nph.15113

2018
Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists

Elena Martino, Emmanuelle Morin, Gwen-Aëlle Grelet, Alan Kuo, Annegret Kohler, Stefania Daghino, Kerrie Barry, Nicolas Cichocki, Alicia Clum, Rhyan Dockter, Matthieu Hainaut, Rita Kuo, Kurt Labutti, Björn Lindahl, Erika Lindquist, Anna Lipzen, Hassine-Radhouane Khouja, Jon Magnuson, Claude Murat, Robin Ohm, Steven Singer, Joseph Spatafora, Mei Wang, Claire Veneault-Fourrey, Bernard Henrissat, Igor Grigoriev, Francis Martin, Silvia Perotto

New Phytologist 217:1213-1229 (2018)10.1111/nph.14974

2018
Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides

Ana Luis, Jonathon Briggs, Xiaoyang Zhang, Benjamin Farnell, Didier Ndeh, Aurore Labourel, Arnaud Basle, Alan Cartmell, Nicolas Terrapon, Katherine Stott, Elisabeth Lowe, Richard Mclean, Kaitlyn Shearer, Julia Schuckel, Immacolata Venditto, Marie-Christine Ralet, Bernard Henrissat, Eric Martens, Steven Mosimann, D Wade Abbott, Harry Gilbert, D. Wade Abbott

Nature Microbiology 3:210-219 (2018)10.1038/s41564-017-0079-1

2018
Lytic xylan oxidases from wood-decay fungi unlock biomass degradation

Marie Couturier, Simon Ladeveze, Gerlind Sulzenbacher, Luisa Ciano, Mathieu Fanuel, Céline Moreau, Ana Villares, Bernard Cathala, Florence Chaspoul, Kristian Frandsen, Aurore Labourel, Isabelle Herpoël-Gimbert, Sacha Grisel, Mireille Haon, Nicolas Lenfant, Hélène Rogniaux, David Ropartz, Gideon Davies, Marie-Noelle Rosso, Paul Walton, Bernard Henrissat, Jean-Guy Berrin

Nature Chemical Biology 14:306-310 (2018)10.1038/nchembio.2558

2018
PULDB: the expanded database of Polysaccharide Utilization Loci

Nicolas Terrapon, Vincent Lombard, Elodie Drula, Pascal Lapébie, Saad Al-Masaudi, Harry Gilbert, Bernard Henrissat

Nucleic Acids Research 46:D677-D683 (2018)10.1093/nar/gkx1022

2018
Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes

Wade Abbott, Orly Alber, Ed Bayer, Jean-Guy Berrin, Alisdair Boraston, Harry Brumer, Ryszard Brzezinski, Anthony Clarke, Beatrice Cobucci-Ponzano, Darrell Cockburn, Pedro Coutinho, Mirjam Czjzek, Bareket Dassa, Gideon John Davies, Vincent Eijsink, Jens Eklof, Alfons Felice, Elizabeth Ficko-Blean, Geoff Pincher, Thierry Fontaine, Zui Fujimoto, Kiyotaka Fujita, Shinya Fushinobu, Harry Gilbert, Tracey Gloster, Ethan Goddard-Borger, Ian Greig, Jan-Hendrik Hehemann, Glyn Hemsworth, Bernard Henrissat, Masafumi Hidaka, Ramon Hurtado-Guerrero, Kiyohiko Igarashi, Takuya Ishida, Stefan Janecek, Seino Jongkees, Nathalie Juge, Satoshi Kaneko, Takane Katayama, Motomitsu Kitaoka, Naotake Konno, Daniel Kracher, Anna Kulminskaya, Alicia Lammerts van Bueren, Sine Larsen, Junho Lee, Markus Linder, Leila Loleggio, Roland Ludwig, Ana Luis, Mirko Maksimainen, Brian Mark, Richard Mclean, Gurvan Michel, Cédric Montanier, Marco Moracci, Haruhide Mori, Hiroyuki Nakai, Wim Nerinckx, Takayuki Ohnuma, Richard Pickersgill, Kathleen Piens, Tirso Pons, Etienne Rebuffet, Peter Reilly, Magali Remaud Simeon, Brian Rempel, Kyle Robinson, David Rose, Juha Rouvinen, Wataru Saburi, Yuichi Sakamoto, Mats Sandgren, Fathima Shaikh, Yuval Shoham, Franz St John, Jerry Stahlberg, Michael Suits, Gerlind Sulzenbacher, Tomomi Sumida, Ryuichiro Suzuki, Birte Svensson, Toki Taira, Ed Taylor, Takashi Tonozuka, Breeanna Urbanowicz, Gustav Vaaje-Kolstad, Wim van den Ende, Annabelle Varrot, Maxime Versluys, Florence Vincent, David Vocadlo, Warren Wakarchuk, Tom Wennekes, Rohan Williams, Spencer Williams, David Wilson, Stephen Withers, Katsuro Yaoi, Vivian Yip, Ran Zhang

Glycobiology 28:3-8 (2018)10.1093/glycob/cwx089

2018
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle

Claude Murat, Thibaut Payen, Benjamin Noël, Alan Kuo, Emmanuelle Morin, Juan Chen, Annegret Kohler, Krisztina Krizsán, Raffaella Balestrini, Corinne da Silva, Barbara Montanini, Matthieu Hainaut, Elisabetta Levati, Kerrie Barry, Beatrice Belfiori, Nicolas Cichocki, Alicia Clum, Rhyan Dockter, Laure Fauchery, Julie Guy, Mirco Iotti, François Le Tacon, Erika Lindquist, Anna Lipzen, Fabienne Malagnac, Antonietta Mello, Virginie Molinier, Shingo Miyauchi, Julie Poulain, Claudia Riccioni, Andrea Rubini, Yaron Sitrit, Richard Splivallo, Stefanie Traeger, Mei Wang, Daniel Wipf, Alessandra Zambonelli, Francesco Paolocci, Minou Nowrousian, Simone Ottonello, Petr Baldrian, Joseph Spatafora, Bernard Henrissat, Laszlo Nagy, Jean-Marc Aury, Patrick Wincker, Igor Grigoriev, Paola Bonfante, Francis Martin

Nature Ecology & Evolution 2:1956-1965 (2018)10.1038/s41559-018-0710-4

2018
Novel carbohydrate binding modules in the surface anchored α-amylase of Eubacterium rectale provide a molecular rationale for the range of starches used by this organism in the human gut

Darrell Cockburn, Carolyn Suh, Krizia Perez Medina, Rebecca Duvall, Zdzislaw Wawrzak, Bernard Henrissat, Nicole Koropatkin

Molecular Microbiology 107:249-264 (2018)10.1111/mmi.13881

2018
The human gut microbe Bacteroides thetaiotaomicron encodes the founding member of a novel glycosaminoglycan-degrading polysaccharide lyase family PL29

Didier Ndeh, Jose Munoz Munoz, Alan Cartmell, David Bulmer, Corinne Wills, Bernard Henrissat, Joseph Gray

Journal of Biological Chemistry 293:17906-17916 (2018)10.1074/jbc.RA118.004510

2018
Comparative analysis of basidiomycete transcriptomes reveals a core set of expressed genes encoding plant biomass degrading enzymes

Mao Peng, Maria Victoria Aguilar-Pontes, Matthieu Hainaut, Bernard Henrissat, Kristiina Hildén, Miia R. Makela, Ronald P. de Vries

Fungal Genetics and Biology 112:40-46 (2018)10.1016/j.fgb.2017.08.001

2018
Structural Dynamics and Catalytic Properties of a Multimodular Xanthanase

Olga V. Moroz, Pernille F. Jensen, Sean P. Mcdonald, Nicholas Mcgregor, Elena Blagova, Gerard Comamala, Dorotea R. Seura, Lars Anderson, Santhosh M. Vasu, Vasudeva P. Rao, Lars Giger, Trine Hoist Sorensen, Rune Nygaard Monrad, Allan Svendsen, Jens Nielsen, Bernard Henrissat, Gideon Davies, Harry Brumer, Kasper D. Rand, Keith S. Wilson

ACS Catalysis 8:6021-6034 (2018)10.1021/acscatal.8b00666

2018
Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass

Shingo Miyauchi, Anaïs Rancon, Elodie Drula, Hayat Hage, Delphine Chaduli, Anne Favel, Sacha Grisel, Bernard Henrissat, Isabelle Herpoel-Gimbert, Francisco J. Ruiz-Duenas, Didier Chevret, Matthieu Hainaut, Junyan Lin, Mei Wang, Jasmyn Pangilinan, Anna Lipzen, Laurence Lesage-Meessen, David Navarro, Robert Riley, Igor V. Grigoriev, Simeng Zhou, Sana Raouche, Marie-Noelle Rosso

Biotechnology for Biofuels 11:np (2018)10.1186/s13068-018-1198-5

2018
High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis

Eric C H Chen, Emmanuelle Morin, Denis Beaudet, Jessica Noel, Gokalp Yildirir, Steve Ndikumana, Philippe Charron, Camille St-Onge, John Giorgi, Manuela Krüger, Timea Marton, Jeanne Ropars, Igor V. Grigoriev, Matthieu Hainaut, Bernard Henrissat, Christophe Roux, Francis Martin, Nicolas Corradi

New Phytologist 220:1161-1171 (2018)10.1111/nph.14989

2017

2017
Structural and electronic determinants of lytic polysaccharide monooxygenase reactivity on polysaccharide substrates

T. Simmons, K.E.H Frandsen, L Ciano, T Tryfona, N Lenfant, J C Poulsen, L Wilson, T Tandrup, M Tovborg, K Schnorr, K. Johansen, Bernard Henrissat, P. Walton, L Lo Leggio, P. Dupree

Nature Communications 8:1064 (2017)10.1038/s41467-017-01247-3

2017
The yeast Geotrichum candidum encodes functional lytic polysaccharide monooxygenases

Simon Ladevèze, Mireille Haon, Ana Villares, Bernard Cathala, Sacha Grisel, Isabelle Herpoël-Gimbert, Bernard Henrissat, Jean-Guy Berrin

Biotechnology for Biofuels 10 (2017)10.1186/s13068-017-0903-0

2017
Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation

Olov Svartström, Johannes Alneberg, Nicolas Terrapon, Vincent Lombard, Ino de Bruijn, Jonas Malmsten, Ann-Marie Dalin, Emilie El Muller, Pranjul Shah, Paul Wilmes, Bernard Henrissat, Henrik Aspeborg, Anders Andersson

ISME Journal 11:2538-2551 (2017)10.1038/ismej.2017.108

2017
Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis

Eleni Gentekaki, Bruce Curtis, Courtney Stairs, Vladimír Klimeš, Marek Eliáš, Dayana Salas-Leiva, Emily Herman, Laura Eme, Maria Arias, Bernard Henrissat, Frederique Hilliou, Mary Klute, Hiroshi Suga, Shehre-Banoo Malik, Arthur Pightling, Martin Kolisko, Richard Rachubinski, Alexander Schlacht, Darren Soanes, Anastasios Tsaousis, John Archibald, Steven Ball, Joel Dacks, C Graham Clark, Mark van der Giezen, Andrew Roger

PLoS Biology 15:e2003769 (2017)10.1371/journal.pbio.2003769

2017
How a Glycoside Hydrolase Recognizes a Helical Polyglucan

Bernard Henrissat, Marie-Line Garron

Structure 25:1319-1321 (2017)10.1016/j.str.2017.08.004

2017
Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens

J. Uehling, A. Gryganskyi, K. Hameed, T. Tschaplinski, P.K. Misztal, S. Wu, A. Desirò, N. Vande Pol, Z. Du, A. Zienkiewicz, K. Zienkiewicz, E. Morin, E. Tisserant, R. Splivallo, M. Hainaut, Bernard Henrissat, R. Ohm, A. Kuo, J. Yan, A. Lipzen, M. Nolan, K. Labutti, K. Barry, A.H. Goldstein, J. Labbé, C. Schadt, G. Tuskan, I. Grigoriev, F. Martin, R. Vilgalys, G. Bonito

Environmental Microbiology 19:2964-2983 (2017)10.1111/1462-2920.13669

2017
Characterization of a mycobacterial cellulase and its impact on biofilm- and drug-induced cellulose production

Niël van Wyk, David Navarro, Mickaël Blaise, Jean-Guy Berrin, Bernard Henrissat, Michel Drancourt, Laurent Kremer

Glycobiology 27:392-399 (2017)10.1093/glycob/cwx014

2017
Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels

Weihua Wu, Ryan Davis, Mary Bao Tran-Gyamfi, Alan Kuo, Kurt Labutti, Sirma Mihaltcheva, Hope Hundley, Mansi Chovatia, Erika Lindquist, Kerrie Barry, Igor Grigoriev, Bernard Henrissat, John Gladden

Applied Microbiology and Biotechnology 101:2603-2618 (2017)10.1007/s00253-017-8091-1

2017
Discovery of genes coding for carbohydrate-active enzyme by metagenomic analysis of lignocellulosic biomasses

Salvatore Montella, Valeria Ventorino, Vincent Lombard, Bernard Henrissat, Olimpia Pepe, Vincenza Faraco

Scientific Reports 7:42623 (2017)10.1038/srep42623

2017
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

Ronald P. Vries, Robert Riley, Ad Wiebenga, Guillermo Aguilar-Osorio, Sotiris Amillis, Cristiane Akemi Uchima, Gregor Anderluh, Mojtaba Asadollahi, Marion Askin, Kerrie Barry, Evy Battaglia, Tiziano Benocci, Susanna A. Braus-Stromeyer, Camila Caldana, David Canovas, Gustavo C. Cerqueira, Fusheng Chen, Wanping Chen, Cindy Choi, Alicia Clum, Renato Augusto Santos, Andre Ricardo Lima Damasio, George Diallinas, Tamas Emri, Erzsébet Fekete, Michel Flipphi, Susanne Freyberg, Antonia Gallo, Christos Gournas, Rob Habgood, Matthieu Hainaut, Maria Laura Harispe, Bernard Henrissat, Kristiina S. Hilden, Ryan Hope, Abeer Hossain, Eugenia Karabika, Levente Karaffa, Zsolt Karanyi, Nada Krasevec, Alan Kuo, Harald Kusch, Kurt Labutti, Ellen L. Lagendijk, Alla Lapidus, Anthony Levasseur, Erika Lindquist, Anna Lipzen, Antonio F. Logrieco, Andrew Maccabe, Miia R. Makela, Iran Malavazi, Petter Melin, Vera Meyer, Natalia Mielnichuk, Marton Miskei, Akos P. Molnar, Giuseppina Mulé, Chew Yee Ngan, Margarita Orejas, Erzsebet Orosz, Jean Paul Ouedraogo, Karin M. Overkamp, Hee-Soo Park, Giancarlo Perrone, François Piumi, Peter J. Punt, Arthur F. J. Ram, Ana Ramón, Stefan Rauscher, Eric Record, Diego Mauricio Riaño-Pachón, Vincent Robert, Julian Roehrig, Roberto Ruller, Asaf Salamov, Nadhira S. Salih, Rob A. Samson, Erzsébet Sándor, Manuel Sanguinetti, Tabea Schutze, Kristina Sepcic, Ekaterina Shelest, Gavin Sherlock, Vicky Sophianopoulou, Fabiom. Squina, Hui Sun, Antonia Susca, Richard B. Todd, Adrian Tsang, Shiela E. Unkles, Nathalie Wiele, Diana Rossen-Uffink, Juliana Velasco Castro Oliveira, Tammi C. Vesth, Jaap Visser, Jae-Hyuk Yu, Miaomiao Zhou, Mikael R. Andersen, David B. Archer, Scott E. Baker, Isabelle Benoit, Axel A. Brakhage, Gerhard H. Braus, Reinhard Fischer, Jens C. Frisvad, Gustavo H. Goldman, Jos Houbraken, Berl Oakley, Istvan Pocsi, Claudio Scazzocchio, Bernhard Seiboth, Patricia A. Vankuyk, Jennifer Wortman, Paul S. Dyer, Igor V. Grigoriev

Genome Biology 18:np (2017)10.1186/s13059-017-1151-0

2017
Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters

Jean-Felix Dallery, Nicolas Lapalu, Antonios Zampounis, Sandrine Pigné, Isabelle Luyten, Joelle Amselem, Alexander H. J. Wittenberg, Shiguo Zhou, Marisa V. de Queiroz, Guillaume Robin, Annie Auger, Matthieu Hainaut, Bernard Henrissat, Ki-Tae Kim, Yong-Hwan Lee, Olivier Lespinet, David C. Schwartz, Michael R. Thon, Richard O'Connell

BMC Genomics 18:np (2017)10.1186/s12864-017-4083-x

2017
A metagenome-derived thermostable β-glucanase with an unusual module architecture which defines the new glycoside hydrolase family GH148

Angel Angelov, Vu Thuy Trang Pham, Maria Übelacker, Silja Brady, Benedikt Leis, Nicole Pill, Judith Brolle, Matthias Mechelke, Matthias Moerch, Bernard Henrissat, Wolfgang Liebl

Scientific Reports 7:17306 (2017)10.1038/s41598-017-16839-8

2017
Exploring the genomic diversity of black yeasts and relatives ( Chaetothyriales , Ascomycota )

M. Teixeira, L. Moreno, B. Stielow, A. Muszewska, M. Hainaut, L. Gonzaga, A. Abouelleil, S. Patané, M. Priest, R. Souza, S. Young, S. Ferreira, Q. Zeng, M.M.L. da Cunha, A. Gladki, B. Barker, A. Vicente, E.M. de Souza, S. Almeida, Bernard Henrissat, A. Vasconcelos, S. Deng, H. Voglmayr, A. Moussa, A. Gorbushina, M.S.S. Felipe, C.A. Cuomo, G. Sybren de Hoog

Studies in Mycology 86:1-28 (2017)10.1016/j.simyco.2017.01.001

2017
An evolutionarily distinct family of polysaccharide lyases removes rhamnose capping of complex arabinogalactan proteins

Jose Munoz-Munoz, Alan Cartmell, Nicolas Terrapon, Arnaud Basle, Bernard Henrissat, Harry J. Gilbert

Journal of Biological Chemistry 292:13271-13283 (2017)10.1074/jbc.M117.794578

2017
Unique organization and unprecedented diversity of the Bacteroides (Pseudobacteroides) cellulosolvens cellulosome system

Olga Zhivin, Bareket Dassa, Sarah Moraïs, Sagar Utturkar, Steven Brown, Bernard Henrissat, Raphael Lamed, Edward Bayer

Biotechnology for Biofuels 10:211 (2017)10.1186/s13068-017-0898-6

2017
A parts list for fungal cellulosomes revealed by comparative genomics

Charles H. Haitjema, Sean P. Gilmore, John K. Henske, Kevin V. Solomon, Randall de Groot, Alan Kuo, Stephen J. Mondo, Asaf A. Salamov, Kurt Labutti, Zhiying Zhao, Jennifer Chiniquy, Kerrie Barry, Heather M. Brewer, Samuel O. Purvine, Aaron T. Wright, Matthieu Hainaut, Brigitte Boxma, Theo van Alen, Johannes H. P. Hackstein, Bernard Henrissat, Scott E. Baker, Igor V. Grigoriev, Michelle A. O'Malley

Nature Microbiology 2:17087 (2017)10.1038/nmicrobiol.2017.87

2017
Unusual active site location and catalytic apparatus in a glycoside hydrolase family

Jose Munoz-Munoz, Alan Cartmell, Nicolas Terrapon, Bernard Henrissat, Harry J. Gilbert

Proceedings of the National Academy of Sciences of the United States of America 114:4936-4941 (2017)10.1073/pnas.1701130114

2017
Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome

Lizi Bensoussan, Sarah Moraïs, Bareket Dassa, Nir Friedman, Bernard Henrissat, Vincent Lombard, Edward Bayer, Itzhak Mizrahi

Environmental Microbiology 19:185-197 (2017)10.1111/1462-2920.13561

2017
A bioinformatics analysis of 3400 lytic polysaccharide oxidases from family AA9

Nicolas Lenfant, Matthieu Hainaut, Nicolas Terrapon, Elodie Drula, Vincent Lombard, Bernard Henrissat

Carbohydrate Research 448:166-174 (2017)10.1016/j.carres.2017.04.012

2017
A Metagenomics Investigation of Carbohydrate-Active Enzymes along the Gastrointestinal Tract of Saudi Sheep

Saad Al-Masaudi, Abdessamad El Kaoutari, Elodie Drula, Hussein Al-Mehdar, Elrashdy M. Redwan, Vincent Lombard, Bernard Henrissat

Frontiers in Microbiology 8:np (2017)10.3389/fmicb.2017.00666

2017
Feed in summer, rest in winter: microbial carbon utilization in forest topsoil

Lucia Zifcakova, Tomas Vetrovsky, Vincent Lombard, Bernard Henrissat, Adina Howe, Petr Baldrian

Microbiome 5:np (2017)10.1186/s40168-017-0340-0

2017
Pan-Cellulosomics of Mesophilic Clostridia: Variations on a Theme

Bareket Dassa, Ilya Borovok, Vincent Lombard, Bernard Henrissat, Raphael Lamed, Edward Bayer, Sarah Moraïs

Microorganisms 5:74 (2017)10.3390/microorganisms5040074

2017
Metabolic roles of uncultivated bacterioplankton lineages in the northern gulf of Mexico "Dead Zone

J. Cameron Thrash, Kiley W. Seitz, Brett J. Baker, Ben Temperton, Lauren E. Gillies, Nancy N. Rabalais, Bernard Henrissat, Olivia U. Mason, Bernard Henrissat

mBio 8 (2017)10.1128/mBio.01017-17

2017
Archaea: Essential inhabitants of the human digestive microbiota

Vanessa Demonfort Nkamga, Bernard Henrissat, Michel Drancourt

Human Microbiome Journal 3:1-8 (2017)10.1016/j.humic.2016.11.005

2017
How members of the human gut microbiota overcome the sulfation problem posed by glycosaminoglycans

Alan Cartmell, Elisabeth Lowe, Arnaud Basle, Susan Firbank, Didier Ndeh, Heath Murray, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Jeremy Turnbull, Mirjam Czjzek, Harry Gilbert, David Bolam

Proceedings of the National Academy of Sciences of the United States of America 114:7037-7042 (2017)10.1073/pnas.1704367114

2017
Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2

Ahmad Ali-Ahmad, Marie-Line Garron, Véronique Zamboni, Nicolas Lenfant, Didier Nurizzo, Bernard Henrissat, Jean-Guy Berrin, Yves Bourne, Florence Vincent

Journal of Structural Biology 197:227-235 (2017)10.1016/j.jsb.2016.11.004

2017
A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic

Orlane Patrascu, Fabienne Beguet-Crespel, Ludovica Marinelli, Emmanuelle Le Chatelier, Anne-Laure Abraham, Marion Leclerc, Christophe Klopp, Nicolas Terrapon, Bernard Henrissat, Hervé Blottiere, Joël Dore, Christel Maillet

Scientific Reports 7:np (2017)10.1038/srep40248

2017
The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi

Mao Peng, Adiphol Dilokpirnol, Miia R. Makela, Kristiina Hilden, Sander Bervoets, Robert Riley, Igor V. Grigoriev, Matthieu Hainaut, Bernard Henrissat, Ronald P. de Vries, Zoraide Granchi

Journal of Biotechnology 246:1-3 (2017)10.1016/j.jbiotec.2017.02.012

2017
Comparative Metagenomics of Cellulose- and Poplar Hydrolysate-Degrading Microcosms from Gut Microflora of the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus) after Long-Term Enrichment

Mabel Wong, Weijun Wang, Marie Couturier, Fakhria Razeq, Vincent Lombard, Pascal Lapébie, Elizabeth Edwards, Nicolas Terrapon, Bernard Henrissat, Emma Master

Frontiers in Microbiology 8:2504 (2017)10.3389/fmicb.2017.02504

2017
Complex pectin metabolism by gut bacteria reveals novel catalytic functions

Didier Ndeh, Artur Rogowski, Alan Cartmell, Ana S. Luis, Arnaud Basle, Joseph Gray, Immacolata Venditto, Jonathon Briggs, Xiaoyang Zhang, Aurore Labourel, Nicolas Terrapon, Fanny Buffetto, Sergey Nepogodiev, Yao Xiao, Robert A. Field, Yanping Zhu, Malcolm A. O'Neill, Breeanna R. Urbanowicz, William S. York, Gideon J. Davies, D. Wade Abbott, Marie-Christine Ralet-Renard, Eric C. Martens, Bernard Henrissat, Harry J. Gilbert

Nature 544:65-+ (2017)10.1038/nature21725

2017
Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12

Jill Gaskell, Phil Kersten, Luis Larrondo, Paulo Canessa, Diego Martínez, David Hibbett, Monika Schmoll, Christian Kubicek, Angel Martinez, Jagjit Yadav, Emma Master, Jon Karl Magnuson, Debbie Yaver, Randy Berka, Kathleen Lail, Cindy Chen, Kurt Labutti, Matt Nolan, Anna Lipzen, Andrea Aerts, Robert Riley, Kerrie Barry, Bernard Henrissat, Robert Blanchette, Igor Grigoriev, Dan Cullen

Genomics Data 14:21-23 (2017)10.1016/j.gdata.2017.08.003

2016

2016
CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems

Anne Abot, Grégory Arnal, Lucas Auer, Adèle Lazuka, Delphine Labourdette, Sophie Lamarre, Lidwine Trouilh, Elisabeth Laville, Vincent Lombard, Gabrielle Potocki-Veronese, Bernard Henrissat, Michael O’donohue, Guillermina Hernandez-Raquet, Claire Dumon, Véronique Le Berre

BMC Genomics 17:1-12 (2016)10.1186/s12864-016-2988-4

2016
Metagenomics unveils the attributes of the alginolytic guilds of sediments from four distant cold coastal environments

Marina N. Matos, Mariana Lozada, Luciano E. Anselmino, Matias A. Musumeci, Bernard Henrissat, Janet K. Jansson, Walter P. Mac Cormack, Jolynn Carroll, Sara Sjoling, Leif Lundgren, Hebe M. Dionisi

Environmental Microbiology 18:4471-4484 (2016)10.1111/1462-2920.13433

2016
The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria.

Boyang Ji, Sheng-Da Zhang, Wei-Jia Zhang, Zoe Rouy, François Alberto, Claire-Lise Santini, Sophie Mangenot, Séverine Gagnot, Nadège Philippe, Nathalie Pradel, Lichen Zhang, Sébastien Tempel, Ying Li, Claudine Médigue, Bernard Henrissat, Pedro Coutinho, Valérie Barbe, Emmanuel Talla, Long-Fei Wu

Environmental Microbiology doi: 10.1111/1462-2920.13637 (2016)10.1111/1462-2920.13637

2016
CAZyme content of Pochonia chlamydosporia reflects that chitin and chitosan modification are involved in nematode parasitism

Almudena Aranda-Martinez, Nicolas Lenfant, Nuria Escudero, Ernesto A. Zavala-Gonzalez, Bernard Henrissat, Luis V. Lopez-Llorca

Environmental Microbiology 18:4200-4215 (2016)10.1111/1462-2920.13544

2016
A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility

Mahesh S. Desai, Anna M. Seekatz, Nicole M. Koropatkin, Nobuhiko Kamada, Christina A. Hickey, Mathis Wolter, Nicholas A. Pudlo, Sho Kitamoto, Nicolas Terrapon, Arnaud Muller, Vincent B. Young, Bernard Henrissat, Paul Wilmes, Thaddeus S. Stappenbeck, Gabriel Nunez, Eric C. Martens

Cell 167:1339+ (2016)10.1016/j.cell.2016.10.043

2016
Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2

S. Haridas, R. Albert, M. Binder, J. Bloem, Kurt Labutti, A. Salamov, B. Andreopoulos, S.E. Baker, Kerrie Barry, G. Bills, B.H. Bluhm, C. Cannon, R. Castanera, D.E. Culley, C. Daum, D. Ezra, J.B. González, Bernard Henrissat, A. Kuo, C. Liang, Anna Lipzen, F. Lutzoni, J. Magnuson, S.J. Mondo, M. Nolan, R.A. Ohm, J. Pangilinan, H.-J. Park, L. Ramírez, M. Alfaro, H. Sun, A. Tritt, Y. Yoshinaga, L.-H. Zwiers, B.G. Turgeon, S.B. Goodwin, J.W. Spatafora, P.W. Crous, I.V. Grigoriev, Thirumalaiselvi Ulaganathan, Rong Shi, Deqiang Yao, Ruo-Xu Gu, Marie-Line Garron, Maia Cherney, D Peter Tieleman, Eric Sterner, Guoyun Li, Lingyun Li, Robert Linhardt, Miroslaw Cygler, Niël van Wyk, Michel Drancourt, Laurent Kremer, Otto Miettinen, Robert Riley, Dan Cullen, Ronald de Vries, Matthieu Hainaut, Annele Hatakka, Kristiina Hildén, Rita Kuo, Miia Mäkelä, Laura Sandor, Joseph Spatafora, Igor Grigoriev, David Hibbett

Genome Announcements 4:112-122 (2016)10.1128/genomeA.00976-16

2016
The Mechanism by Which Arabinoxylanases Can Recognize Highly Decorated Xylans

Aurore Labourel, Lucy I. Crouch, Joana L. A. Bras, Adam Jackson, Artur Rogowski, Joseph Gray, Madhav P. Yadav, Bernard Henrissat, Carlos M. G. A. Fontes, Harry J. Gilbert, Shabir Najmudin, Arnaud Basle, Fiona Cuskin

Journal of Biological Chemistry 291:22149-22159 (2016)10.1074/jbc.M116.743948

2016
Erratum: Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi

Stéphane Hacquard, Barbara Kracher, Kei Hiruma, Philipp C. Münch, Ruben Garrido-Oter, Michael R. Thon, Aaron Weimann, Ulrike Damm, Jean-Félix Dallery, Matthieu Hainaut, Bernard Henrissat, Olivier Lespinet, Soledad Sacristán, Emiel Ver Loren van Themaat, Eric Kemen, Alice C. Mchardy, Paul Schulze-Lefert, Richard J. O’connell

Nature Communications 7 (2016)10.1038/ncomms13072

2016
Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum

Martina Peter, Annegret Kohler, Robin A. Ohm, Alan Kuo, Jennifer Kruetzmann, Emmanuelle Morin, Matthias Arend, Kerrie W. Barry, Manfred Binder, Cindy Choi, Alicia Clum, Alex Copeland, Nadine Grisel, Sajeet Haridas, Tabea Kipfer, Kurt Labutti, Erika Lindquist, Anna Lipzen, Renaud Maire, Barbara Meier, Sirma Mihaltcheva, Virginie Molinier, Claude Murat, Stefanie Poeggeler, C. Alisha Quandt, Christoph Sperisen, Andrew Tritt, Emilie Tisserant, Pedro W. Crous, Bernard Henrissat, Uwe Nehls, Simon Egli, Joseph W. Spatafora, Igor V. Grigoriev, Francis M. Martin

Nature Communications 7:1-15 (2016)10.1038/ncomms12662

2016
Understanding plant cell-wall remodelling during the symbiotic interaction between Tuber melanosporum and Corylus avellana using a carbohydrate microarray

Fabiano Sillo, Jonatan U. Fangel, Bernard Henrissat, Antonella Faccio, Paola Bonfante, Francis Martin, William G. T. Willats, Raffaella Balestrini

Planta 244:347-359 (2016)10.1007/s00425-016-2507-5

2016
Functional Exploration of the Polysaccharide Lyase Family PL6

Sophie Mathieu, Bernard Henrissat, Flavien Labre, Gudmund Skjak-Braek, William Helbert

PLoS ONE 11:1-15 (2016)10.1371/journal.pone.0159415

2016
The mucin-degradation strategy of Ruminococcus gnavus: The importance of intramolecular trans-sialidases

E. H. Crost, L. E. Tailford, M. Monestier, D. Swarbreck, Bernard Henrissat, L. C. Crossman, N. Juge

Gut microbes 7:302-312 (2016)

2016
Draft Genome Sequence of the Deep-Sea Basidiomycetous Yeast Cryptococcus sp. Strain Mo29 Reveals Its Biotechnological Potential

V. Redou, A. Kumar, M. Hainaut, Bernard Henrissat, E. Record, G. Barbier, G. Burgaud

Genome Announc 4 (2016)

2016
Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis

Jordane Despres, Evelyne Forano, Pascale Lepercq, Sophie Comtet-Marre, Gregory Jubelin, Carl J. Yeoman, Margret E. Berg Miller, Christopher J. Fields, Nicolas Terrapon, Carine Le Bourvellec, Catherine M. G. C. Renard, Bernard Henrissat, Bryan A. White, Pascale Mosoni

BMC Genomics 27 (2016)10.1186/s12864-016-2758-3

2016
Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication

Luis M. Corrochano, Alan Kuo, Marina Marcet-Houben, Silvia Polaino, Asaf Salamov, Jose M. Villalobos-Escobedo, Jane Grimwood, M. Isabel Alvarez, Javier Avalos, Diane Bauer, Ernesto P. Benito, Isabelle Benoit, Gertraud Burger, Lola P. Camino, David Canovas, Enrique Cerda-Olmedo, Jan-Fang Cheng, Angel Dominguez, Marek Elias, Arturo P. Eslava, Fabian Glaser, Gabriel Gutierrez, Joseph Heitman, Bernard Henrissat, Enrique A. Iturriaga, B. Franz Lang, Jose L. Lavin, Soo Chan Lee, Wenjun Li, Erika Lindquist, Sergio Lopez-Garcia, Eva M. Luque, Ana T. Marcos, Joel Martin, Kevin Mccluskey, Humberto R. Medina, Alejandro Miralles-Duran, Atsushi Miyazaki, Elisa Munoz-Torres, Jose A. Oguiza, Robin A. Ohm, Maria Olmedo, Margarita Orejas, Lucila Ortiz-Castellanos, Antonio G. Pisabarro, Julio Rodriguez-Romero, Jose Ruiz-Herrera, Rosa Ruiz-Vazquez, Catalina Sanz, Wendy Schackwitz, Mahdi Shahriari, Ekaterina Shelest, Fatima Silva-Franco, Darren Soanes, Khajamohiddin Syed, Victor G. Tagua, Nicholas J. Talbot, Michael R. Thon, Hope Tice, Ronald P. Vries, Ad Wiebenga, Jagjit S. Yadav, Edward L. Braun, Scott E. Baker, Victoriano Garre, Jeremy Schmutz, Benjamin A. Horwitz, Santiago Torres-Martinez, Alexander Idnurm, Alfredo Herrera-Estrella, Toni Gabaldon, Igor V. Grigoriev

Current Biology - CB 26:1577-1584 (2016)10.1016/j.cub.2016.04.038

2016
Complexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition

Immacolata Venditto, Ana S. Luis, Maja Rydahl, Julia Schuckel, Vania O. Fernandes, Silvia Vidal-Melgosa, Pedro Bule, Arun Goyal, Virginia M. R. Pires, Catarina G. Dourado, Luis M. A. Ferreira, Pedro Coutinho, Bernard Henrissat, J. Paul Knox, Arnaud Basle, Shabir Najmudin, Harry J. Gilbert, William G. T. Willats, Carlos M. G. A. Fontes

Proceedings of the National Academy of Sciences of the United States of America 113:7136-7141 (2016)10.1073/pnas.1601558113

2016
The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

Sebastian Akker, Dominik R. Laetsch, Peter Thorpe, Catherine J. Lilley, Etienne G. J. Danchin, Martine da Rocha, Corinne Rancurel, Nancy E. Holroyd, James A. Cotton, Amir Szitenberg, Eric Grenier, Josselin Montarry, Benjamin Mimee, Marc-Olivier Duceppe, Ian Boyes, Jessica M. C. Marvin, Laura M. Jones, Hazijah B. Yusup, Joel Lafond-Lapalme, Magali Esquibet, Michael Sabeh, Michael Rott, Hein Overmars, Anna Finkers-Tomczak, Geert Smant, Georgios Koutsovoulos, Vivian Blok, Sophie Mantelin, Peter J. A. Cock, Wendy Phillips, Bernard Henrissat, Peter E. Urwin, Mark Blaxter, John T. Jones

Genome Biology 17:1-23 (2016)10.1186/s13059-016-0985-1

2016
Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi

Stéphane Hacquard, Barbara Kracher, Kei Hiruma, Philipp C. Münch, Ruben Garrido-Oter, Michael R. Thon, Aaron Weimann, Ulrike Damm, Jean-Félix Dallery, Matthieu Hainaut, Bernard Henrissat, Olivier Lespinet, Soledad Sacristán, Emiel Ver Loren van Themaat, Eric Kemen, Alice C. Mchardy, Paul Schulze-Lefert, Richard J. O’connell

Nature Communications 7:1-12 (2016)10.1038/ncomms11362

2016
Xylan degradation by the human gut Bacteroides xylanisolvens XB1A(T) involves two distinct gene clusters that are linked at the transcriptional level

Jordane Despres, Evelyne Forano, Pascale Lepercq, Sophie Comtet-Marre, Gregory Jubelin, Christophe Chambon, Carl J. Yeoman, Margaret E. Berg Miller, Christopher J. Fields, Eric Martens, Nicolas Terrapon, Bernard Henrissat, Bryan A. White, Pascale Mosoni

BMC Genomics 17 (2016)10.1186/s12864-016-2680-8

2016
Glycans affect DNA extraction and induce substantial differences in gut metagenomic studies

Emmanouil Angelakis, Dipankar Bachar, Bernard Henrissat, Fabrice Armougom, Gilles Audoly, Jean-Christophe Lagier, Catherine Robert, Didier Raoult

Scientific Reports 6 (2016)10.1038/srep26276

2016
The molecular basis of polysaccharide cleavage by lytic polysaccharide monooxygenases

Kristian E. H. Frandsen, Thomas J. Simmons, Paul Dupree, Jens-Christian N. Poulsen, Glyn R. Hemsworth, Luisa Ciano, Esther M. Johnston, Morten Tovborg, Katja S. Johansen, Pernille Freiesleben, Laurence Marmuse, Sebastien Fort, Sylvain Cottaz, Hugues Driguez, Bernard Henrissat, Nicolas Lenfant, Floriana Tuna, Amgalanbaatar Baldansuren, Gideon J. Davies, Leila Lo Leggio, Paul H. Walton

Nature Chemical Biology 12:298+ (2016)10.1038/NCHEMBIO.2029

2016
Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors

Firoz Shah, Cesar Nicolas, Johan Bentzer, Magnus Ellstrom, Mark Smits, Francois Rineau, Bjorn Canback, Dimitrios Floudas, Robert Carleer, Gerald Lackner, Jana Braesel, Dirk Hoffmeister, Bernard Henrissat, Dag Ahren, Tomas Johansson, David S. Hibbett, Francis Martin, Per Persson, Anders Tunlid

New Phytologist 209:1705-1719 (2016)10.1111/nph.13722

2016
Dividing the Large Glycoside Hydrolase Family 43 into Subfamilies: a Motivation for Detailed Enzyme Characterization

Keith Mewis, Nicolas Lenfant, Vincent Lombard, Bernard Henrissat

Applied and Environmental Microbiology 82:1686-1692 (2016)10.1128/AEM.03453-15

2016
MICROBIOME Gut bacteria that prevent growth impairments transmitted by microbiota from malnourished children

Laura V. Blanton, Mark R. Charbonneau, Tarek Salih, Michael J. Barratt, Siddarth Venkatesh, Olga Ilkaveya, Sathish Subramanian, Mark J. Manary, Indi Trehan, Josh M. Jorgensen, Yue-Mei Fan, Bernard Henrissat, Semen A. Leyn, Dmitry A. Rodionov, Andrei L. Osterman, Kennethm. Maleta, Christopher B. Newgard, Per Ashorn, Kathryn G. Dewey, Jeffrey I. Gordon

Science 351:830-U57 (2016)10.1126/science.aad3311

2016
Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles

Markus Schlegel, Martin Munsterktter, Ulrich Guldener, Remy Bruggmann, Angelo Duo, Matthieu Hainaut, Bernard Henrissat, Christian M. K. Sieber, Dirk Hoffmeister, Christoph R. Grunig

BMC Genomics 17:1015 (2016)10.1186/s12864-016-3369-8

2016
Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis

Jordane Despres, Evelyne Forano, Pascale Lepercq, Sophie Comtet-Marre, Gregory Jubelin, Carl J. Yeoman, Margret E. Berg Miller, Christopher J. Fields, Nicolas Terrapon, Carine Le Bourvellec, Catherine M. G. C. Renard, Bernard Henrissat, Bryan A. White, Pascale Mosoni

BMC Genomics 17:147 (2016)10.1186/s12864-016-2472-1

2016
Single-domain flavoenzymes trigger lytic polysaccharide monooxygenases for oxidative degradation of cellulose

Sona Garajova, Yann Mathieu, Maria Rosa Beccia, Chloé Bennati-Granier, Frédéric Biaso, Mathieu Fanuel, David Ropartz, Bruno Guigliarelli, Eric Record, Helene Rogniaux-Bonaventure, Bernard Henrissat, Jean-Guy Berrin

Scientific Reports 6:Article number: 28276 (2016)10.1038/srep28276

2016
Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi

Carolyn A. Zeiner, Samuel O. Purvine, Erika M. Zink, Ljiljana Pasa-Tolic, Dominique L. Chaput, Sajeet Haridas, Si Wu, Kurt Labutti, Igor V. Grigoriev, Bernard Henrissat, Cara M. Santelli, Colleen M. Hansel

PLoS ONE 11:e0157844 (2016)10.1371/journal.pone.0157844

2016
Draft Genome Sequence of the Deep-Sea Ascomycetous Filamentous Fungus Cadophora malorum Mo12 from the Mid-Atlantic Ridge Reveals Its Biotechnological Potential

Rédou V, Kumar A, Matthieu Hainaut, Bernard Henrissat, Record E, Barbier G, Burgaud G.

Genome Announcements 4:e00467-16 (2016)10.1128/genomeA.00467-16

2016
Draft Genome Sequence of the Deep-Sea Basidiomycetous Yeast Cryptococcus sp. Strain Mo29 Reveals Its Biotechnological Potential.

Rédou V, Kumar A, Hainaut M, Bernard Henrissat, Record E, Barbier G, Burgaud G.

Genome Announcements 4:e00461-16 (2016)10.1128/genomeA.00461-16

2016
Structure-Function Analysis of a Mixed-linkage beta-Glucanase/Xyloglucanase from the Key Ruminal Bacteroidetes Prevotella bryantii B(1)4

Nicholas Mcgregor, Mariya Morar, Thomas Hauch Fenger, Peter Stogios, Nicolas Lenfant, Victor Yin, Xiaohui Xu, Elena Evdokimova, Hong Cui, Bernard Henrissat, Alexei Savchenko, Harry Brumer

Journal of Biological Chemistry 291:1175-1197 (2016)10.1074/jbc.M115.691659

2016
The Quaternary Structure of a Glycoside Hydrolase Dictates Specificity toward β-Glucans

Mickael Lafond, Gerlind Sulzenbacher, Thibaud Freyd, Bernard Henrissat, Jean-Guy Berrin, Marie-Line Garron

Journal of Biological Chemistry 291:7183-7194 (2016)10.1074/jbc.M115.695999

2016
Composting-Like Conditions Are More Efficient for Enrichment and Diversity of Organisms Containing Cellulase-Encoding Genes than Submerged Cultures

Senta Heiss-Blanquet, Francoise Fayolle-Guichard, Vincent Lombard, Agnès Hébert, Pedro Coutinho, Alexis Groppi, Aurélien Barré, Bernard Henrissat

PLoS ONE 11:497-497 (2016)10.1371/journal.pone.0167216

2016
Genome Assembly of the Fungus Cochliobolus miyabeanus, and Transcriptome Analysis during Early Stages of Infection on American Wildrice (Zizania palustris L.)

Claudia V. Castell-Miller, Juan J. Gutierrez-Gonzalez, Zheng Jin Tu, Kathryn E. Bushley, Matthieu Hainaut, Bernard Henrissat, Deborah A. Samac

PLoS ONE 11:e0154122 (2016)10.1371/journal.pone.0154122

2016
Increased Gut Redox and Depletion of Anaerobic and Methanogenic Prokaryotes in Severe Acute Malnutrition

Matthieu Million, Maryam Tidjani Alou, Saber Khelaifia, Dipankar Bachar, Jean-Christophe Lagier, Niokhor Dione, Souleymane Brah, Perrine Hugon, Vincent Lombard, Fabrice Armougom, Julien Fromonot, Catherine Robert, Caroline Michelle, Aldiouma Diallo, Alexandre Fabre, Régis Guieu, Cheikh Sokhna, Bernard Henrissat, Philippe Parola, Didier Raoult

Scientific Reports 6:26051 (2016)10.1038/srep26051

2016
Comparative genomic analysis of Drechmeria coniospora reveals core and specific genetic requirements for fungal endoparisitism of nematodes

Lebrigand K., He L.D., Thakur N., Arguel M.J., Polanowska J., Bernard Henrissat, Record E., Ghislaine Magdelenat, Valérie Barbe, Raffaele S., Barbry P., Ewbank J.J

PLoS Genetics 12 (2016)10.1371/journal.pgen.1006017

2016
Visual comparative omics of fungi for plant biomass deconstruction

Shingo Miyauchi, David Navarro, Igor V. Grigoriev, Anna Lipzen, Robert Riley, Didier Chevret, Sacha Grisel, Jean-Guy Berrin, Bernard Henrissat, Marie-Noëlle Rosso

Frontiers in Microbiology 7:1335 (2016)10.3389/fmicb.2016.01335

2016
Fungal secretomics of ascomycete fungi for biotechnological applications

Marie Couturier, David Navarro, Anne Favel, Mireille Haon, C. Lechat, Laurence Lesage-Meessen, Didier Chevret, Vincent Lombard, Bernard Henrissat, Jean-Guy Berrin

Mycosphere Journal 7:1546-1553 (2016)10.5943/mycosphere/si/3b/6

2016
The genome of Xylona heveae provides a window into fungal endophytism

Romina Gazis, Alan Kuo, Robert Riley, Kurt Labutti, Anna Lipzen, Junyan Lin, Mojgan Amirebrahimi, Cedar N. Hesse, Joseph W. Spatafora, Bernard Henrissat, Matthieu Hainaut, Igor V. Grigoriev, David S. Hibbett

Fungal Biology 120:26-42 (2016)10.1016/j.funbio.2015.10.002

2015

2015
Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus

Marie Couturier, David Navarro, Didier Chevret, Bernard Henrissat, Francois Piumi, Francisco J. Ruiz-Duenas, Angel T. Martinez, Igor V. Grigoriev, Robert Riley, Anna Lipzen, Jean-Guy Berrin, Emma R. Master, Marie-Noelle Rosso

Biotechnology for Biofuels 8 (2015)10.1186/s13068-015-0407-8

2015
Gut microbiota richness promotes its stability upon increased dietary fibre intake in healthy adults

Julien Tap, Jean-Pierre Furet, Martine Bensaada, Catherine Philippe, Hubert Roth, Sylvie Rabot, Omar Lakhdari, Vincent Lombard, Bernard Henrissat, Gerard Corthier, Eric Fontaine, Joel Dore, Marion Leclerc

Environmental Microbiology 17:4954-4964 (2015)10.1111/1462-2920.13006

2015
De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulis Strain LF580 Unravels Life-Style Traits and Anticancerous Scopularide Biosynthetic Gene Cluster

Abhishek Kumar, Bernard Henrissat, Mikko Arvas, Muhammad Fahad Syed, Nils Thieme, J. Philipp Benz, Jens Laurids Sorensen, Eric Record, Stefanie Poeggeler, Frank Kempken

PLoS ONE 10 (2015)10.1371/journal.pone.0140398

2015
Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides

Meng Wu, Nathan P. Mcnulty, Dmitry A. Rodionov, Matvei S. Khoroshkin, Nicholas W. Griffin, Jiye Cheng, Phil Latreille, Randall A. Kerstetter, Nicolas Terrapon, Bernard Henrissat, Andrei L. Osterman, Jeffrey I. Gordon

Science 350 (2015)10.1126/science.aac5992

2015
A Metagenomic Investigation of the Duodenal Microbiota Reveals Links with Obesity

Emmanouil Angelakis, F. Armougom, Frédéric Carrière, Dipankar Bachar, René Laugier, Jean-Christophe Lagier, Catherine Robert, Caroline Michelle, Bernard Henrissat, Didier Raoult

PLoS ONE 10 (2015)10.1371/journal.pone.0137784

2015
Functional guild classification predicts the enzymatic role of fungi in litter and soil biogeochemistry

Jennifer M. Talbot, Francis Martin, Annegret Kohler, Bernard Henrissat, Kabir G. Peay

Soil Biology and Biochemistry 88:441-456 (2015)10.1016/j.soilbio.2015.05.006

2015
Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts

Guillaume Morel, Lieven Sterck, Dominique Swennen, Marina Marcet-Houben, Djamila Onesime, Anthony Levasseur, Noémie Jacques, Sandrine Mallet, Arnaux Couloux, Karine Labadie, Joëlle Amselem, Jean-Marie Beckerich, Bernard Henrissat, Yves van de Peer, Patrick Wincker, Jean-Luc Souciet, Toni Gabaldón, Colin Tinsley, Serge Casaregola

Scientific Reports 5 (2015)10.1038/srep11571

2015
Unique Organization of Extracellular Amylases into Amylosomes in the Resistant Starch-Utilizing Human Colonic Firmicutes Bacterium Ruminococcus bromii

Xiaolei Ze, Yonit Ben David, Jenny A. Laverde-Gomez, Bareket Dassa, Paul O. Sheridan, Sylvia H. Duncan, Petra Louis, Bernard Henrissat, Nathalie Juge, Nicole M. Koropatkin, Edward A. Bayer, Harry J. Flint

mBio 6 (2015)10.1128/mBio.01058-15

2015
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Isberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O'Donovan, Kim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier, Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, Ake Vastermark, Gerrit Vriend

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2015:1-5 (2015)10.1093/database/bav063

2015
Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts

Guillaume Morel, Lieven Sterck, Dominique Swennen, Marina Marcet-Houben, Djamila Onesime, Anthony Levasseur, Noémie Jacques, Sandrine Mallet, Arnaud Couloux, Karine Labadie, Joelle Amselem, Jean-Marie Beckerich, Bernard Henrissat, Yves van de Peer, Patrick Wincker, Jean-Luc Souciet, Toni Gabaldón, Colin R. Tinsley, Serge Casaregola

Scientific Reports 5 (2015)10.1038/srep11571

2015
Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels

Elsa Petit, Maddalena V. Coppi, James C. Hayes, Andrew C. Tolonen, Thomas Warnick, William G. Latouf, Danielle Amisano, Amy Biddle, Supratim Mukherjee, Natalia Ivanova, Athanassios Lykidis, Miriam Land, Loren Hauser, Nikos Kyrpides, Bernard Henrissat, Joanne Lau, Danny J. Schnell, George M. Church, Susan B. Leschine, Jeffrey L. Blanchard

PLoS ONE (2015)

2015
Glycan complexity dictates microbial resource allocation in the large intestine

Artur Rogowski, Jonathon A. Briggs, Jennifer C. Mortimer, Theodora Tryfona, Nicolas Terrapon, Elisabeth C. Lowe, Arnaud Basle, Carl Morland, Alison M. Day, Hongjun Zheng, Theresa E. Rogers, Paul Thompson, Alastair R. Hawkins, Madhav P. Yadav, Bernard Henrissat, Eric C. Martens, Paul Dupree, Harry J. Gilbert, David N. Bolam

Nature Communications 6 (2015)10.1038/ncomms8481

2015
Key challenges for the creation and maintenance of specialist protein resources

Gemma L. Holliday, Amos Bairoch, Pantelis G. Bagos, Arnaud Chatonnet, David J. Craik, Robert D. Finn, Bernard Henrissat, David Landsman, Gerard Manning, Nozomi Nagano, Claire O'Donovan, Kim D. Pruitt, Neil D. Rawlings, Milton Saier, Ramanathan Sowdhamini, Michael Spedding, Narayanaswamy Srinivasan, Gert Vriend, Patricia C. Babbitt, Alex Bateman

Proteins - Structure, Function and Bioinformatics 83:1005-1013 (2015)10.1002/prot.24803

2015
Structural basis for carbohydrate binding properties of a plant chitinase-like agglutinin with conserved catalytic machinery

Gerlind Sulzenbacher, Veronique Roig-Zamboni, Willy J. Peumans, Bernard Henrissat, Els J. M. Damme, Yves Bourne

Journal of Structural Biology 190:115-121 (2015)10.1016/j.jsb.2015.01.013

2015
Automatic prediction of polysaccharide utilization loci in Bacteroidetes species

Nicolas Terrapon, Vincent Lombard, Harry J. Gilbert, Bernard Henrissat

Bioinformatics 31:647-655 (2015)10.1093/bioinformatics/btu716

2015
Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen

Braham Dhillon, Nicolas Feau, Andrea L. Aerts, Stephanie Beauseigle, Louis Bernier, Alex Copeland, Adam Foster, Navdeep Gill, Bernard Henrissat, Padmini Herath, Kurt M. Labutti, Anthony Levasseur, Erika A. Lindquist, Eline Majoor, Robin A. Ohm, Jasmyn L. Pangilinan, Amadeus Pribowo, John N. Saddler, Monique L. Sakalidis, Ronald P. Vries, Igor V. Grigoriev, Stephen B. Goodwin, Philippe Tanguay, Richard C. Hamelin

Proceedings of the National Academy of Sciences of the United States of America 112:3451-3456 (2015)10.1073/pnas.1424293112

2015
Functional Annotation of the Ophiostoma novo-ulmi Genome: Insights into the Phytopathogenicity of the Fungal Agent of Dutch Elm Disease

André M. Comeau, Josée Dufour, Guillaume F. Bouvet, Volker Jacobi, Martha Nigg, Bernard Henrissat, Jérôme Laroche, Roger C. Levesque, Louis Bernier

Genome Biology and Evolution 7:410-430 (2015)10.1093/gbe/evu281

2015
A glycogene mutation map for discovery of diseases of glycosylation

Lars Hansen, Allan Lind-Thomsen, Hiren J. Joshi, Nis Borbye Pedersen, Christian Theil Have, Yun Kong, Shengjun Wang, Thomas Sparso, Niels Grarup, Malene Bech Vester-Christensen, Katrine Schjoldager, Hudson H. Freeze, Torben Hansen, Oluf Pedersen, Bernard Henrissat, Ulla Mandel, Henrik Clausen, Hans H. Wandall, Eric P. Bennett

Glycobiology 25:211-224 (2015)10.1093/glycob/cwu104

2015
Insights on the Evolution of Mycoparasitism from the Genome of Clonostachys rosea

Magnus Karlsson, Mikael Brandström Durling, Jaeyoung Choi, Chatchai Kosawang, Gerald Lackner, Georgios D. Tzelepis, Kristiina Nygren, Mukesh K. Dubey, Nathalie Kamou, Anthony Levasseur, Antonio Zapparata, Jinhui Wang, Daniel Buchvaldt Amby, Birgit Jensen, Sabrina Sarrocco, Emmanuel Panteris, Anastasia L. Lagopodi, Stefanie Pöggeler, Giovanni Vannacci, David B. Collinge, Dirk Hoffmeister, Bernard Henrissat, Yong-Hwan Lee, Dan Funck Jensen

Genome Biology and Evolution 7:465-480 (2015)10.1093/gbe/evu292

2015
Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus

Michael H Perlin, Joelle Amselem, Eric Fontanillas, Su San Toh, Zehua Chen, Jonathan Goldberg, Sébastien Duplessis, Bernard Henrissat, Sarah Young, Qiandong Zeng, Gabriela Aguileta, Elsa Petit, Helene Badouin, Jared Andrews, Dominique Razeeq, Toni Gabaldón, Hadi Quesneville, Tatiana Giraud, Michael E Hood, David J Schultz, Christina A Cuomo

BMC Genomics 16:np (2015)10.1186/s12864-015-1660-8

2015
Structure–function characterization reveals new catalytic diversity in the galactose oxidase and glyoxal oxidase family

Delu (tyler) Yin, Saioa Urresti, Mickael Lafond, Esther M. Johnston, Fatemeh Derikvand, Luisa Ciano, Jean-Guy Berrin, Bernard Henrissat, Paul H. Walton, Gideon J. Davies, Harry Brumer

Nature Communications 6:10197 (2015)10.1038/ncomms10197

2015
Structure and boosting activity of a starch-degrading lytic polysaccharide monooxygenase

Leila Lo Leggio, Thomas J. Simmons, Jens-Christian N. Poulsen, Kristian E. H. Frandsen, Glyn R. Hemsworth, Mary A. Stringer, Pernille Freiesleben, Morten Tovborg, Katja S. Johansen, Leonardo de Maria, Paul V. Harris, Chee-Leong Soong, Paul Dupree, Theodora Tryfona, Nicolas Lenfant, Bernard Henrissat, Gideon J. Davies, Paul H. Walton

Nature Communications 6:5961 (2015)10.1038/ncomms6961

2015
The transcriptome of Euglena gracilis reveals unexpected metabolic capabilities for carbohydrate and natural product biochemistry

Ellis C. O'Neill, Martin Trick, Lionel Hill, Martin Rejzek, Renata G. Dusi, Chris J. Hamilton, Paul V. Zimba, Bernard Henrissat, Robert A. Field

Molecular BioSystems 11:2808-2820 (2015)10.1039/c5mb00319a

2015
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

Annegret Kohler, Alan Kuo, Laszlo G. Nagy, Emmanuelle Morin, Kerrie W. Barry, Francois Buscot, Björn Canbäck, Cindy Choi, Nicolas Cichocki, Alicia Clum, Jan Colpaert, Alex Copeland, Mauricio D. Costa, Jeanne Dore, Dimitrios Floudas, Gilles Gay, Mariangela Girlanda, Bernard Henrissat, Sylvie Herrmann, Jaqueline Hess, Nils Högberg, Tomas Johansson, Hassine-Radhouane Khouja, Kurt Labutti, Urs Lahrmann, Anthony Levasseur, Erika A. Lindquist, Anna Lipzen, Roland Marmeisse, Elena Martino, Claude Murat, Chew Y. Ngan, Uwe Nehls, Jonathan M. Plett, Anne Pringle, Robin A. Ohm, Silvia Perotto, Martina Peter, Robert Riley, François Rineau, Joske Ruytinx, Asaf Salamov, Firoz Shah, Hui Sun, Mika Tarkka, Andrew Tritt, Claire Veneault-Fourrey, Alga Zuccaro, . Mycorrhizal Genomics Initiative Consortium, Anders Tunlid, Igor V. Grigoriev, David S. Hibbett, Francis Martin

Nature Genetics 47:410-U176 (2015)10.1038/ng.3223

2015
Closely related fungi employ diverse enzymatic strategies to degrade plant biomass

Isabelle Benoit, Helena Culleton, Miaomiao Zhou, Marcos Difalco, Guillermo Aguilar‑osorio, Evy Battaglia, Ourdia Bouzid, Carlo P J M Brouwer, Hala B O El‑bushari, Pedro Coutinho, Birgit S Gruben, Kristiina S Hildén, Jos Houbraken, Luis Alexis Jiménez Barboza, Anthony Levasseur, Eline Majoor, Miia R Mäkelä, Hari‑mander Narang, Blanca Trejo‑aguilar, Joost van den Brink, Patricia A Vankuyk, Ad Wiebenga, Vincent Mckie, Barry Mccleary, Adrian Tsang, Bernard Henrissat, Ronald P de Vries

Biotechnology for Biofuels 8:1-14 (2015)10.1186/s13068-015-0285-0

2015
Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis

Jeanne Dore, Marie Perraud, Cindy Dieryckx, Annegret Kohler, Emmanuelle Morin, Bernard Henrissat, Erika Lindquist, Sabine D. Zimmermann, Vincent Girard, Alan Kuo, Igor V Grigoriev, Francis Martin, Roland Marmeisse, Gilles Gay

New Phytologist 208:1169-1187 (2015)10.1111/nph.13546

2015
Deciphering genome content and evolutionary relationships of isolates from the fungus Magnaporthe oryzae attacking different host plants

Helene Chiapello, Ludovic Mallet, Cyprien Guerin, Gabriela Aguileta, Joelle Amselem, Thomas Kroj, Enrique Ortega-Abboud, Marc-Henri Lebrun, Bernard Henrissat, Annie Gendrault, François Rodolphe, Didier Tharreau, Elisabeth Fournier

Genome Biology and Evolution 7:2896-2912 (2015)10.1093/gbe/evv187

2015
Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts

Guillaume Morel, Lieven Sterck, Dominique Swennen, Marina Marcet-Houben, Djamila Onesime, Anthony Levasseur, Noémie Jacques, Sandrine Mallet, Arnaux Couloux, Karine Labadie, Joëlle Amselem, Jean-Marie Beckerich, Bernard Henrissat, Yves van de Peer, Patrick Wincker, Jean-Luc Souciet, Toni Gabaldón, Colin Tinsley, Serge Casaregola

Scientific Reports 5:11571 (2015)10.1038/srep11571

2014

2014
Comparative analyses of Podospora anserina secretomes reveal a large array of lignocellulose-active enzymes.

Laetitia Poidevin, Jean-Guy Berrin, Chloé Bennati-Granier, Anthony Levasseur, Isabelle Herpoël-Gimbert, Didier Chevret, Pedro Coutinho, Bernard Henrissat, Senta Heiss-Blanquet, Eric Record

Applied Microbiology and Biotechnology 98:7457-7469 (2014)10.1007/s00253-014-5698-3

2014
Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

Robert Riley, Asaf A. Salamov, Daren W. Brown, Laszlo G. Nagy, Dimitrios Floudas, Benjamin W. Held, Anthony Levasseur, Vincent Lombard, Emmanuelle Morin, Robert Otillar, Erika A. Lindquist, Hui Sun, Kurt M. Labutti, Jeremy Schmutz, Dina Jabbour, Hong Luo, Scott E. Baker, Antonio G. Pisabarro, Jonathan D. Walton, Robert A. Blanchette, Bernard Henrissat, Francis Martin, Dan Cullen, David S. Hibbett, Igor V. Grigoriev

Proceedings of the National Academy of Sciences of the United States of America 111:9923-9928 (2014)10.1073/pnas.1400592111

2014
First Structural Insights into α-l-Arabinofuranosidases from the Two GH62 Glycoside Hydrolase Subfamilies

Béatrice Siguier, Mireille Haon, Virginie Nahoum, Marlène Marcellin, Odile Burlet-Schiltz, Pedro Coutinho, Bernard Henrissat, Lionel Mourey, Michael O'Donohue, Jean-Guy Berrin, Samuel Tranier, Claire Dumon

Journal of Biological Chemistry 289:5261-5273 (2014)10.1074/jbc.M113.528133

2014
Comparative genomics analysis of Lactobacillus species associated with weight gain or weight protection

Fatima Drissi, Vicky Merhej, Emmanouil Angelakis, Abdessamad El Kaoutari, Frédéric Carrière, Bernard Henrissat, Didier Raoult

Nutrition & Diabetes 4:e109-e109 (2014)10.1038/nutd.2014.6

2014
Comparative genomic analysis provides insights into the evolution and niche adaptation of marine Magnetospira sp. QH-2 strain

Boyang Ji, Sheng-Da Zhang, Pascal Arnoux, Zoe Rouy, François Alberto, Nadège Philippe, Dorothée Murat, Wei-Jia Zhang, Jean-Baptiste Rioux, Nicolas Ginet, Monique Sabaty, Sophie Mangenot, Nathalie Pradel, Jiesheng Tian, Jing Yang, Lichen Zhang, Wenyan Zhang, Hongmiao Pan, Bernard Henrissat, Pedro Coutinho, Ying Li, Tian Xiao, Claudine Médigue, Valérie Barbe, David Pignol, Emmanuel Talla, Long-Fei Wu

Environmental Microbiology 16:525-544 (2014)10.1111/1462-2920.12180

2014
The genome of the white-rot fungus [i]Pycnoporus cinnabarinus[/i]: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown

Anthony Levasseur, Anne Lomascolo, Olivier Chabrol, Francisco J Ruiz-Dueñas, Eva Boukhris-Uzan, Francois Piumi, Ursula Kües, Arthur F J Ram, Claude Murat-Furminieux, Mireille Haon, Isabelle Benoit, Yonathan Arfi, Didier Chevret, Elodie Drula, Min Jin Kwon, Philippe Gouret, Laurence Lesage-Meessen, Vincent Lombard, Jérôme Mariette, Celine Noirot, Joohae Park, Aleksandrina Patyshakuliyeva, Jean-Claude Sigoillot, Ad Wiebenga, Han a B Wösten, Francis Martin, Pedro Coutinho, Ronald P de Vries, Angel T Martínez, Christophe Klopp, Pierre Pontarotti, Bernard Henrissat, Eric Record

BMC Genomics 15:486 (2014)10.1186/1471-2164-15-486

2014
Rumen cellulosomics: divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains

Bareket Dassa, Ilya Borovok, Vered Ruimy-Israeli, Raphael Lamed, Harry J Flint, Sylvia H Duncan, Bernard Henrissat, Pedro Coutinho, Mark Morrison, Pascale Mosoni, Carl J Yeoman, Bryan A White, Edward A Bayer

PLoS ONE 9:e99221 (2014)10.1371/journal.pone.0099221

2014
Fast solubilization of recalcitrant cellulosic biomass by the basidiomycete fungus [i]Laetisaria arvalis[/i] involves successive secretion of oxidative and hydrolytic enzymes

David Navarro, Marie-Noelle Rosso, Mireille Haon, Caroline Olivé, Estelle Bonnin, Laurence Lesage-Meessen, Didier Chevret, Pedro M Couthino, Bernard Henrissat, Jean-Guy Berrin

Biotechnology for Biofuels 7:14 p. (2014)10.1186/s13068-014-0143-5

2014
Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment

Claire Veneault-Fourrey, Carine Commun, Annegret Kohler, Emmanuelle Morin, Raffaella Balestrini, Jonathan Michael Plett, Etienne Danchin, Pedro Coutinho, Ad Wiebenga, Ronald P de Vries, Bernard Henrissat, Francis Martin

Fungal Genetics and Biology 72:168-181 (2014)10.1016/j.fgb.2014.08.007

2013

2013
Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

Emilie Tisserant, Mathilde Malbreil, Alan Kuo, Annegret Kohler, Aikaterini Symeonidi, Raffaella Balestrini, Philippe Charron, Nina Duensing, Nicolas Frei Dit Frey, Vivienne Gianinazzi-Pearson, Luz B. Gilbert, Yoshihiro Handa, Joshua R. Herr, Mohamed Hijri, Raman Koul, Masayoshi Kawaguchi, Franziska Krajinski, Peter J. Lammers, Frederic G. Masclaux, Claude Murat, Emmanuelle Morin, Steve Ndikumana, Marco Pagni, Denis Petitpierre, Natalia Requena, Pawel Rosikiewicz, Rohan Riley, Katsuharu Saito, Hélène San Clemente, Harris Shapiro, Diederik van Tuinen, Guillaume Bécard, Paola Bonfante, Uta Paszkowski, Yair Y. Shachar-Hill, Gerald A. Tuskan, J. Peter W. Young, Ian R. Sanders, Bernard Henrissat, Stefan A. Rensing, Igor V. Grigoriev, Nicolas Corradi, Christophe Roux, Francis Martin

Proceedings of the National Academy of Sciences of the United States of America 110:20117-20122 (2013)10.1073/pnas.1313452110

2013
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

Jean-François Flot, Boris Hespeels, Xiang Li, Benjamin Noel, Irina Arkhipova, Etienne G. J. Danchin, Andreas Hejnol, Bernard Henrissat, Romain Koszul, Jean-Marc Aury, Valerie Barbe, Roxane-Marie Barthelemy, Jens Bast

Nature 500:453-457 (2013)10.1038/nature12326

2013
Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus

Aleksandrina Patyshakuliyeva, Edita Jurak, Annegret Kohler, Adam Baker, Evy Battaglia, Wouter de Bruijn, Kerry S. Burton, Michael P. Challen, Pedro Coutinho, Daniel C. Eastwood, Birgit S. Gruben, Miia R. Makela, Francis Martin, Marina Nadal, Joost van den Brink, Ad Wiebenga, Miaomiao Zhou, Bernard Henrissat, Mirjam Kabel, Harry Gruppen, Ronald P. de Vries

BMC Genomics 14:np (2013)10.1186/1471-2164-14-663

2013
Mining for hemicellulases in the fungus-growing termite Pseudacanthotermes militaris using functional metagenomics

Geraldine Bastien-Uluis, Grégory Arnal, Sophie Bozonnet, Sandrine Laguerre-Gheusi, Fernando Ferreira, Régis Fauré, Bernard Henrissat, Fabrice Lefèvre, Patrick Robe, Olivier Bouchez, Celine Noirot, Claire Dumon, Michael O'Donohue

Biotechnology for Biofuels 6, online:Non paginé (2013)10.1186/1754-6834-6-78

2013
Development and Validation of a Microarray for the Investigation of the CAZymes Encoded by the Human Gut Microbiome

Abdessamad El Kaoutari, Fabrice Armougom, Quentin Leroy, Bernard Vialettes, Matthieu Million, Didier Raoult, Bernard Henrissat

PLoS ONE 8:e84033 (2013)10.1371/journal.pone.0084033

2013
Cello-oligosaccharide oxidation reveals differences between two lytic polysaccharide monooxygenases (family GH61) from Podospora anserina

Mathieu Bey, Simeng Zhou, Laetitia Poidevin, Bernard Henrissat, Pedro Coutinho, Jean-Guy Berrin, Jean-Claude Sigoillot

Applied and Environmental Microbiology 79:488-496 (2013)10.1128/AEM.02942-12

2013
Insights into exo- and endoglucanase activities of family 6 glycoside hydrolases from Podospora anserina

Laetitia Poidevin, Julia Feliu, Annick Doan, Jean-Guy Berrin, Mathieu Bey, Pedro Coutinho, Bernard Henrissat, Eric Record, Senta Heiss-Blanquet

Applied and Environmental Microbiology 79:4220-4229 (2013)10.1128/AEM.00327-13

2013
Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

Anthony Levasseur, Elodie Drula, Vincent Lombard, Pedro Coutinho, Bernard Henrissat

Biotechnology for Biofuels 6:1-14 (2013)10.1186/1754-6834-6-41

2013
Genome of the red alga Porphyridium purpureum

Debashish Bhattacharya, Dana C. Price, Cheong Xin Chan, Huan Qiu, Nicholas Rose, Steven Ball, Andreas P. M. Weber, Maria Cecilia Arias, Bernard Henrissat, Pedro Coutinho, Anagha Krishnan, Simone Zäuner, Shannon Morath, Frédérique Hilliou, Andrea Egizi, Marie-Mathilde Perrineau, Hwan Su Yoon

Nature Communications 4 (2013)10.1038/ncomms2931

2013
Characterization of salt-adapted secreted lignocellulolytic enzymes from the mangrove fungus Pestalotiopsis sp

Yonathan Arfi, Didier Chevret, Bernard Henrissat, Jean-Guy Berrin, Anthony Levasseur, Eric Record

Nature Communications 4:1810 (2013)10.1038/ncomms2850

2013
Functional metagenomics reveals novel pathways of prebiotic breakdown by human gut bacteria

Davide Cecchini, Elisabeth Laville, Sandrine Laguerre, Patrick Robe, Marion Leclerc, Joel Dore, Bernard Henrissat, Magali Remaud Simeon, Pierre Monsan, Gabrielle Veronese

PLoS ONE 8:np (2013)10.1371/journal.pone.0072766

2013
Role of Glycoside Phosphorylases in Mannose Foraging by Human Gut Bacteria

Simon Ladeveze, Laurence Tarquis, Davide Cecchini, Juliette Bercovici, Isabelle André, Christopher Topham, Sandrine Morel, Elisabeth Laville, Pierre Monsan, Vincent Lombard, Bernard Henrissat, Gabrielle Potocki-Veronese

Journal of Biological Chemistry 288:32370-32383 (2013)10.1074/jbc.M113.483628

2013
Correction for Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche (vol 109, pg 17501, 2012)

Emmanuelle Morin, Annegret Kohler, Adam R. Baker, Marie Foulongne-Oriol, Julien Lombard, Laszlo G. Nagy, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Annick Brun-Jacob, Andrea L. Aerts, Andrew M. Bailey, Christophe Billette, Pedro Coutinho, Greg Deakin, Harshavardhan Doddapaneni, Dimitrios Floudas, Jane Grimwood, Kristiina Hildén, Ursula Kües, Kurt M. Labutti, Alla Lapidus, Erika A. Lindquist, Susan M. Lucas, Claude Murat-Furminieux, Robert W. Riley, Asaf A. Salamov, Jeremy Schmutz, Venkataramanan Subramanian, Han A. B. Wösten, Jianping Xu, Daniel C. Eastwood, Gary D. Foster, Anton S. M. Sonnenberg, Dan Cullen, Ronald P. de Vries, Taina Lundell, David S. Hibbett, Bernard Henrissat, Kerry S. Burton, Richard W. Kerrigan, Michael P. Challen, Igor V. Grigoriev, Francis Martin

Proceedings of the National Academy of Sciences of the United States of America 110:4146-4146 (2013)10.1073/pnas.1300201110

2012

2012
Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants.

Maria Cecilia Arias, Etienne G J Danchin, Pedro Coutinho, Bernard Henrissat, Steven Ball

Mobile Genetic Elements 2:81-87 (2012)10.4161/mge.20375

2012
Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis

Marie Couturier, David Navarro, Caroline Olive, Didier Chevret, Mireille Haon, Anne Favel, Laurence Lesage-Meessen, Bernard Henrissat, Pedro Coutinho, Jean-Guy Berrin

BMC Genomics 13:1-14 (2012)10.1186/1471-2164-13-57

2012
The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry

Pierre J. G. M. de Wit, Ate van der Burgt, Bilal Okmen, Ioannis Stergiopoulos, Kamel A. Abd-Elsalam, Andrea L. Aerts, Ali H. Bahkali, Henriek G. Beenen, Pranav Chettri, Murray P. Cox, Erwin Datema, Ronald P. de Vries, Braham Dhillon, Austen R. Ganley, Scott A. Griffiths, Yanan Guo, Richard C. Hamelin, Bernard Henrissat, M. Shahjahan Kabir, Mansoor Karimi Jashni, Gert Kema, Sylvia Klaubauf, Alla Lapidus, Anthony Levasseur, Erika Lindquist, Rahim Mehrabi, Robin A. Ohm, Timothy J. Owen, Asaf Salamov, Arne Schwelm, Elio Schijlen, Hui Sun, Harrold A. van den Burg, Roeland C. H. J. van Ham, Shuguang Zhang, Stephen B. Goodwin, Igor V. Grigoriev, Jerome Collemare, Rosie E. Bradshaw

PLoS Genetics 8:np (2012)10.1371/journal.pgen.1003088

2012
Functional analysis of family GH36 α-galactosidases from Ruminococcus gnavus E1: insights into the metabolism of a plant oligosaccharide by a human gut symbiont

M. Cervera-Tison, L. E. Tailford, C. Fuell, L. Bruel, G. Sulzenbacher, Bernard Henrissat, Jean-Guy Berrin, M. Fons, T. Giardina, N. Juge

Applied and Environmental Microbiology 78:7720-7732 (2012)10.1128/AEM.01350-12

2012
Peptidoglycan: a post-genomic analysis.

Caroline Cayrou, Bernard Henrissat, Philippe Gouret, Pierre Pontarotti, Michel Drancourt

BMC Microbiology 12:294 (2012)10.1186/1471-2180-12-294

2012
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

Richard J O'Connell, Michael R Thon, Stéphane Hacquard, Stefan G Amyotte, Jochem Kleeman, Maria F Torres, Ulrike Damm, Ester A Buiate, Lynn Epstein, Noam Alkan, Janine Altmüller, Lucia Alvarado-Balderrama, Christopher A. Bauser, Christian Becker, Bruce W. Birren, Zehua Chen, Jaeyoung Choi, Jo Aann Crouch, Jonathan P. Duvick, Mark A. Farman, Pamela Gan, David Heiman, Bernard Henrissat, Richard J Howard, Mehdi Kabbage, Christian Koch, Barbara Kracher, Yasuyuki Kubo, Audrey D Law, Marc-Henri Lebrun, Yong-Hwan Lee, Itay Miyara, Neil Moore, Ulla Neumann, Karl Nordström, Daniel G Panaccione, Ralph Panstruga, Michael Place, Robert H Proctor, Dov Prusky, Gabriel Rech, Richard Reinhardt, Jeffrey A Rollings, Steve Rounsley, Christopher L Schardl, David C Schwartz, Narmada Shenoy, Ken Shirasu, Usha R Sikhakolli, Kurt Stüber, Serenella A Sukno, James A Sweigard, Yoshitaka Takano, Hiroyuki Takahara, Frances Trail, Charlotte H van der Does, Lars M Voll, Isa Will, Sarah Young, Qiandong Zeng, Jingze Zhang, Shiguo Zhou, Martin B Dickman, Paul Schulze-Lefert, Emiel Ver Loren van Themaat, Li-Jun Ma, Lisa J Vaillancourt

Nature Genetics 44:1060-1065 (2012)10.1038/ng.2372

2012
Genome sequence of the model medicinal mushroom Ganoderma lucidum

Shilin Chen, Jiang Xu, Chang Liu, Yingjie Zhu, David R Nelson, Shiguo Zhou, Chunfang Li, Lizhi Wang, Xu Guo, Yongzhen Sun, Hongmei Luo, Ying Li, Jingyuan Song, Bernard Henrissat, Anthony Levasseur, Jun Qian, Jianqin Li, Xiang Luo, Linchun Shi, Liu He, Li Xiang, Xiaolan Xu, Yunyun Niu, Qiushi Li, Mira V Han, Haixia Yan, Jin Zhang, Haimei Chen, Aiping Lv, Zhen Wang, Mingzhu Liu, David C Schwartz, Chao Sun

Nature Communications 3:1-9 (2012)10.1038/ncomms1923

2012
Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)

Henrik Aspeborg, Pedro Coutinho, Yang Wang, Harry Brumer, Bernard Henrissat

BMC Evolutionary Biology 12:186 (2012)10.1186/1471-2148-12-186

2012
Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.

Ake Olson, Andrea Aerts, Fred Asiegbu, Lassaâd Belbahri, Ourdia Bouzid, Anders Broberg, Björn Canbäck, Pedro Coutinho, Dan Cullen, Kerstin Dalman, Giuliana Deflorio, Linda T A van Diepen, Christophe Dunand, Sébastien Duplessis, Mikael Durling, Paul Gonthier, Jane Grimwood, Carl Gunnar Fossdal, David Hansson, Bernard Henrissat, Ari Hietala, Kajsa Himmelstrand, Dirk Hoffmeister, Nils Högberg, Timothy Y James, Magnus Karlsson, Annegret Kohler, Ursula Kues, Yong-Hwan Lee, Yao-Cheng Lin, Mårten Lind, Erika Lindquist, Vincent Lombard, Susan Lucas, Karl Lundén, Emmanuelle Morin, Claude Murat, Jongsun Park, Tommaso Raffaello, Pierre Rouzé, Asaf Salamov, Jeremy Schmutz, Halvor Solheim, Jerry Ståhlberg, Heriberto Vélëz, Ronald P de Vries, Ad Wiebenga, Steve Woodward, Igor Yakovlev, Matteo Garbelotto, Francis Martin, Igor V. Grigoriev, Jan Stenlid

New Phytologist 194:1001-1013 (2012)10.1111/j.1469-8137.2012.04128.x

2012
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

Emmanuelle Morin, Annegret Kohler, Adam R. Baker, Marie Foulongne-Oriol, Julien Lombard, Laszlo G. Nagy, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Annick Brun-Jacob, Andrea L. Aerts, Andrew M. Bailey, Christophe Billette, Pedro Coutinho, Greg Deakin, Harshavardhan Doddapaneni, Dimitrios Floudas, Jane Grimwood, Kristiina Hildén, Ursula Kües, Kurt M. Labutti, Alla Lapidus, Erika A. Lindquist, Susan M. Lucas, Claude Murat-Furminieux, Robert W. Riley, Asaf A. Salamov, Jeremy Schmutz, Venkataramanan Subramanian, Han A. B. Wösten, Jianping Xu, Daniel C. Eastwood, Gary D. Foster, Anton S. M. Sonnenberg, Dan Cullen, Ronald P. de Vries, Taina Lundell, David S. Hibbett, Bernard Henrissat, Kerry S. Burton, Richard W. Kerrigan, Michael P. Challen, Igor V. Grigoriev, Francis Martin

Proceedings of the National Academy of Sciences of the United States of America 109:17501-17506 (2012)10.1073/pnas.1206847109

2012
The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes

Dimitrios Floudas, Manfred Binder, Robert Riley, Kerrie Barry, Robert A. Blanchette, Bernard Henrissat, Angel T. Martínez, Robert Otillar, Joseph W. Spatafora, Jagjit S. Yadav, Andrea Aerts, Isabelle Benoit, Alex Boyd, Alexis Carlson, Alex Copeland, Pedro Coutinho, Ronald P. de Vries, Patricia Ferreira, Keisha Findley, Brian Foster, Jill Gaskell, Dylan Glotzer, Pawel Górecki, Joseph Heitman, Cedar Hesse, Chiaki Hori, Kiyohiko Igarashi, Joel A. Jurgens, Nathan Kallen, Phil Kersten, Annegret Kohler, Ursula Kües, T. K. Arun Kumar, Alan Kuo, Kurt Labutti, Luis F. Larrondo, Erika Lindquist, Albee Ling, Vincent Lombard, Susan Lucas, Taina Lundell, Rachael Martin, David J. Mclaughlin, Ingo Morgenstern, Emmanuelle Morin, Claude Murat-Furminieux, Laszlo G. Nagy, Matt Nolan, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Antonis Rokas, Francisco J. Ruiz-Dueñas, Grzegorz Sabat, Asaf Salamov, Masahiro Samejima, Jeremy Schmutz, Jason C. Slot, Franz St. John, Jan Stenlid, Hui Sun, Sheng Sun, Khajamohiddin Syed, Adrian Tsang, Ad Wiebenga, Darcy Young, Antonio Pisabarro, Daniel C. Eastwood, Francis Martin, Dan Cullen, Igor V. Grigoriev, David S. Hibbett

Science 336:1715-1719 (2012)10.1126/science.1221748

2011

2011
Mimivirus shows dramatic genome reduction after intraamoebal culture

Mickaël Boyer, Saïd Azza, Lina Barrassi, Thomas Klose, Angélique Campocasso, Isabelle Pagnier, Ghislain Fournous, Audrey Borg, Catherine Robert, Xinzheng Zhang, Christelle Desnues, Bernard Henrissat, Michael Rossmann, Bernard La Scola, Didier Raoult

Proceedings of the National Academy of Sciences of the United States of America 108:10296-10301 (2011)

2011
Mycobacterium tuberculosis Complex Mycobacteria as Amoeba-Resistant Organisms

Felix Mba Medie, Iskandar Ben Salah, Bernard Henrissat, Didier Raoult, Michel Drancourt

PLoS ONE 6:e20499 (2011)10.1371/journal.pone.0020499

2011
Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen

Scott Diguistini, Ye Wang, Nancy Y. Liao, Greg Taylor, Philippe Tanguay, Nicolas Feau, Bernard Henrissat, Simon K. Chan, Uljana Hesse-Orce, Sepideh Massoumi Alamouti, Clement K. M. Tsui, Roderick T. Docking, Anthony Levasseur, Sajeet Haridas, Gordon Robertson, Inanç Birol, Robert A. Holt, Marco A. Marra, Richard C. Hamelin, Martin Hirst, Steven J.M. Jones, Jörg Bohlmann, Colette Breuil

Proceedings of the National Academy of Sciences of the United States of America 108:2504-2509 (2011)10.1073/pnas.1011289108

2011
Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.

Christian Kubicek, Alfredo Herrera-Estrella, Verena Seidl-Seiboth, Diego Martinez, Irina Druzhinina, Michael Thon, Susanne Zeilinger, Sergio Casas-Flores, Benjamin Horwitz, Prasun Mukherjee, Mala Mukherjee, László Kredics, Luis Alcaraz, Andrea Aerts, Zsuzsanna Antal, Lea Atanasova, Mayte Cervantes-Badillo, Jean Challacombe, Olga Chertkov, Kevin Mccluskey, Fanny Coulpier, Nandan Deshpande, Hans von Döhren, Daniel Ebbole, Edgardo Esquivel-Naranjo, Erzsébet Fekete, Michel Flipphi, Fabian Glaser, Elida Gómez-Rodríguez, Sabine Gruber, Cliff Han, Bernard Henrissat, Rosa Hermosa, Miguel Hernández-Oñate, Levente Karaffa, Idit Kosti, Stéphane Le Crom, Erika Lindquist, Susan Lucas, Mette Lübeck, Peter Lübeck, Antoine Margeot, Benjamin Metz, Monica Misra, Helena Nevalainen, Markus Omann, Nicolle Packer, Giancarlo Perrone, Edith Uresti-Rivera, Asaf Salamov, Monika Schmoll, Bernhard Seiboth, Harris Shapiro, Serenella Sukno, Juan Antonio Tamayo-Ramos, Doris Tisch, Aric Wiest, Heather Wilkinson, Michael Zhang, Pedro Coutinho, Charles Kenerley, Scott Baker, Igor Grigoriev

Genome Biology 12:R40 (2011)10.1186/gb-2011-12-4-r40

2011
A novel, noncatalytic carbohydrate-binding module displays specificity for galactose-containing polysaccharides through calcium-mediated oligomerization

Cédric Montanier, Márcia a S Correia, James E Flint, Yanping Zhu, Arnaud Baslé, Lauren S Mckee, José a M Prates, Samuel J Polizzi, Pedro Coutinho, Richard J Lewis, Bernard Henrissat, Carlos M G A Fontes, Harry J Gilbert

Journal of Biological Chemistry 286:22499-509 (2011)10.1074/jbc.M110.217372

2011
Podospora anserina hemicellulases potentiate Trichoderma reesei secretome for the saccharification of lignocellulosic biomass

Marie Couturier, Mireille Haon, Pedro Coutinho, Laurence Lesage-Meessen, Jean-Guy Berrin, Bernard Henrissat

Applied and Environmental Microbiology 77:237-246 (2011)10.1128/AEM.01761-10

2011
The cyst-dividing bacterium Ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment.

Gilles de Luca, ​mohamed Barakat, Philippe Ortet, Sylvain Fochesato, Cécile Jourlin-Castelli, Mireille Ansaldi, Béatrice Py, Gwennaele Fichant, Pedro Coutinho, Romé Voulhoux, Olivier Bastien, Eric Maréchal, Bernard Henrissat, Yves Quentin, Philippe Noirot, Alain Filloux, Vincent Méjean, Michael S Dubow, Frédéric Barras, Valérie Barbe, Jean Weissenbach, Irina Mihalcescu, André Verméglio, Wafa Achouak, Thierry Heulin

PLoS ONE 6:e23784 (2011)10.1371/journal.pone.0023784

2011
Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Sébastien Duplessis, Christina A Cuomo, Yao-Cheng Lin, Andrea Aerts, Emilie Tisserant, Claire Veneault-Fourrey, David L. Joly, Stéphane Hacquard, Joelle Amselem, Brandi Cantarel, Readman Chin, Pedro Coutinho, Nicolas Feau, Matthew Field, Pascal Frey, Éric Gelhaye, Jonathan Goldberg, Manfred G Grabherr, Chimappa D Kodira, Annegret Kohler, Ursula Kues, Erika A Lindquist, Susan Lucas, Rohit Mago, Evan Mauceli, Emmanuelle Morin, Claude Murat, Jasmyn J. Pangilinan, Robert Park, Matthew Pearson, Hadi Quesneville, Nicolas Rouhier, Sharadha Sakthikumar, Asaf A Salamov, Jeremy Schmutz, Benjamin Selles, Harris Shapiro, Philippe Tanguay, Gerald A Tuskan, Bernard Henrissat, Yves van de Peer, Pierre Rouze, Jeffrey G. Ellis, Peter N Dodds, Jacqueline E. Schein, Shaobin Zhong, Richard C Hamelin, Igor V Grigoriev, Les J Szabo, Francis Martin

Proceedings of the National Academy of Sciences of the United States of America 108:9166-9171 (2011)10.1073/pnas.1019315108

2011
Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

Joelle Amselem, Christina A. Cuomo, Jan A. L. van Kan, Muriel Viaud, Ernesto P. Benito, Arnaud Couloux, Pedro Coutinho, Ronald P. de Vries, Paul S. Dyer, Sabine, Helma Fillinger-David, Elisabeth Fournier, Lilian Gout, Matthias Hahn, Linda Kohn, Nicolas Lapalu, Kim M. Plummer, Jean-Marc Pradier, Emmanuel Quevillon, Amir Sharon, Adeline Simon, Arjen ten Have, Bettina Tudzynski, Paul Tudzynski, Patrick Wincker, Marion Andrew, Véronique Anthouard, Ross E. Beever, Rolland Beffa, Isabelle Benoit, Ourdia Bouzid, Baptiste Brault, Zehua Chen, Mathias Choquer, Jerome Collemare, Pascale Cotton, Etienne Danchin, Corinne da Silva, Angelique Gautier, Corinne Giraud-Delville, Tatiana Giraud, Celedonio Gonzalez, Sandrine Grossetete, Ulrich Gueldener, Bernard Henrissat, Barbara J. Howlett, Chinnappa Kodira, Matthias Kretschmer, Anne Lappartient, Michaela Leroch, Caroline Levis, Evan Mauceli, Cécile Neuvéglise, Birgitt Oeser, Matthew Pearson, Julie Poulain, Nathalie Poussereau, Hadi Quesneville, Christine Rascle, Julia Schumacher, Béatrice Segurens, Adrienne Sexton, Evelyn Silva, Catherine Sirven, Darren M. Soanes, Nicholas J. Talbot, Matt Templeton, Chandri Yandava, Oded Yarden, Qiandong Zeng, Jeffrey A. Rollins, Marc-Henri Lebrun, Marty Dickman

PLoS Genetics 7:np (2011)10.1371/journal.pgen.1002230

2011
The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

Daniel C. Eastwood, Dimitrios Floudas, Manfred Binder, Andrzej Majcherczyk, Patrick Schneider, Andrea Aerts, Fred O. Asiegbu, Scott E. Baker, Kerrie Barry, Mika Bendiksby, Melanie Blumentritt, Pedro Coutinho, Dan Cullen, Ronald P. de Vries, Allen Gathman, Barry Goodell, Bernard Henrissat, Katarina Ihrmark, Havard Kauserud, Annegret Kohler, Kurt Labutti, Alla Lapidus, Jose L. Lavin, Yong-Hwan Lee, Erika Lindquist, Walt Lilly, Susan Lucas, Emmanuelle Morin, Claude Murat, Jose A. Oguiza, Jongsun Park, Antonio G. Pisabarro, Robert Riley, Anna Rosling, Asaf Salamov, Olaf Schmidt, Jeremy Schmutz, Inger Skrede, Jan Stenlid, Ad Wiebenga, Xinfeng Xie, Ursula Kuees, David S. Hibbett, Dirk Hoffmeister, Nils Högberg, Francis Martin, Igor V. Grigoriev, Sarah C. Watkinson

Science 333:762-765 (2011)10.1126/science.1205411

2010

2010
A hierarchical classification of polysaccharide lyases for glycogenomics

Vincent Lombard, Thomas Bernard, Corinne Rancurel, Harry Brumer, Pedro Coutinho, Bernard Henrissat

Biochemical Journal 432:437-444 (2010)10.1042/BJ20101185

2010
Structure of a polyisoprenoid binding domain from Saccharophagus degradans implicated in plant cell wall breakdown

Florence Vincent, David Dal Molin, Ronald Weiner, Yves Bourne, Bernard Henrissat

FEBS Letters 584:1577-1584 (2010)10.1016/j.febslet.2010.03.015

2010
Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes

Etienne Danchin, Marie-Noelle Rosso, Paulo Vieira, Janice de Almeida-Engler, Pedro Coutinho, Bernard Henrissat, Pierre Abad

Proceedings of the National Academy of Sciences of the United States of America 107:17651-17656 (2010)

2010
A novel α-N-acetylgalactosaminidase family with an NAD+-dependent catalytic mechanism suitable for enzymatic removal of blood group A antigens

Gerlind Sulzenbacher, Qiyong Liu, Eric Bennett, Steven Levery, Yves Bourne, Guillaume Ponchel, Henrik Clausen, Bernard Henrissat

Biocatalysis and Biotransformation 28:22-32 (2010)10.3109/10242420903424259

2010
Signature active site architectures illuminate the molecular basis for ligand specificity in family 35 carbohydrate binding module

Márcia a S Correia, D Wade Abbott, Tracey M Gloster, Vânia O Fernandes, José a M Prates, Cédric Montanier, C. Dumon, Michael P Williamson, Richard B Tunnicliffe, Ziyuan Liu, James E Flint, Gideon J Davies, Bernard Henrissat, Pedro Coutinho, Carlos M G A Fontes, Harry J Gilbert

Biochemistry 49:6193-6205 (2010)10.1021/bi1006139

2010
Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes

Lena Tasse, Juliette Bercovici, Sandra Pizzut-Serin, Patrick Robe, Julien Tap, Christophe Klopp, Brandi L. Cantarel, Pedro Coutinho, Bernard Henrissat, Marion Leclerc, Joel Dore, Pierre Monsan, Magali Remaud Simeon, Gabrielle Potocki-Veronese

Genome Research 20:1605-1612 (2010)10.1101/gr.108332.110

2010
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

C André Lévesque, Henk Brouwer, Liliana Cano, John P Hamilton, Carson Holt, Edgar Huitema, Sylvain Raffaele, Gregg P Robideau, Marco Thines, Joe Win, Marcelo M Zerillo, Gordon W Beakes, Jeffrey L Boore, Dana Busam, Bernard Dumas, Steve Ferriera, Susan I Fuerstenberg, Claire M M Gachon, Elodie Gaulin, Francine Govers, Laura Grenville-Briggs, Neil Horner, Jessica Hostetler, Rays H Y Jiang, Justin Johnson, Theerapong Krajaejun, Haining Lin, Harold J G Meijer, Barry Moore, Paul Morris, Vipaporn Phuntmart, Daniela Puiu, Jyoti Shetty, Jason E Stajich, Sucheta Tripathy, Stephan Wawra, Pieter van West, Brett R Whitty, Pedro Coutinho, Bernard Henrissat, Frank Martin, Paul D Thomas, Brett M Tyler, Ronald P de Vries, Sophien Kamoun, Mark Yandell, Ned Tisserat, C Robin Buell

Genome Biology 11:np (2010)10.1186/gb-2010-11-7-r73

2010
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

Li-Jun Ma, Charlotte van der Does, Katherine A. Borkovich, Jeffrey J. Coleman, Marie-José Daboussi, Antonio Di Pietro, Marie Dufresne, Michael Freitag, Manfred Grabherr, Bernard Henrissat, Petra M. Houterman, Seogchan Kang, Won-Bo Shim, Charles Woloshuk, Xiaohui Xie, Jin-Rong Xu, John Antoniw, Scott E. Baker, Burton H. Bluhm, Andrew Breakspear, Daren W. Brown, Robert A. E. Butchko, Sinead Chapman, Richard Coulson, Pedro Coutinho, Etienne Danchin, Andrew Diener, Liane R. Gale, Donald M. Gardiner, Stephen Goff, Kim E. Hammond-Kosack, Karen Hilburn, Aurelie Hua-Van, Wilfried Jonkers, Kemal Kazan, Chinnappa D. Kodira, Michael Koehrsen, Lokesh Kumar, Yong-Hwan Lee, Liande Li, John M. Manners, Diego Miranda-Saavedra, Mala Mukherjee, Gyungsoon Park, Jongsun Park, Sook-Young Park, Robert H. Proctor, Aviv Regev, Carmen Ruiz-Roldan, Divya Sain, Sharadha Sakthikumar, Sean Sykes, David C. Schwartz, B. Gillian Turgeon, Ilan Wapinski, Olen Yoder, Sarah Young, Qiandong Zeng, Shiguo Zhou, James Galagan, Christina A. Cuomo, H. Corby Kistler, Martijn Rep

Nature 464:367-373 (2010)10.1038/nature08850

2010
Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

Francis Martin, Annegret Kohler, Claude Murat, Raffaella Balestrini, Pedro Coutinho, Olivier Jaillon, Barbara Montanini, Emmanuelle Morin, Benjamin Noel, Riccardo Percudani, Betina Porcel, Andrea Rubini, Antonella Amicucci, Joelle Amselem, Véronique Anthouard, Sergio Arcioni, François Artiguenave, Jean-Marc Aury, Paola Ballario, Angelo Bolchi, Andrea Brenna, Annick Brun, Marc Buée, Brandi Cantarel, Gérard Chevalier, Arnaud Couloux, Corinne da Silva, France Denoeud, Sébastien Duplessis, Stefano Ghignone, Benoît Hilselberger, Mirco Iotti, Benoit Marçais, Antonietta Mello, Michele Miranda, Giovanni Pacioni, Hadi Quesneville, Claudia Riccioni, Roberta Ruotolo, Richard Splivallo, Vilberto Stocchi, Emilie Tisserant, Arturo Roberto Viscomi, Alessandra Zambonelli, Elisa Zampieri, Bernard Henrissat, Marc-Henri Lebrun, Francesco Paolocci, Paola Bonfante, Simone Ottonello, Patrick Wincker

Nature 464:1033-1038 (2010)10.1038/nature08867

2009

2009
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.

Alexandra Z Worden, Jae-Hyeok Lee, Thomas Mock, Pierre Rouzé, Melinda P Simmons, Andrea L Aerts, Andrew E Allen, Marie L Cuvelier, Evelyne Derelle, Meredith V Everett, Elodie Foulon, Jane Grimwood, Heidrun Gundlach, Bernard Henrissat, Carolyn Napoli, Sarah M Mcdonald, Micaela S Parker, Stephane Rombauts, Aasf Salamov, Peter von Dassow, Jonathan H Badger, Pedro Coutinho, Elif Demir, Inna Dubchak, Chelle Gentemann, Wenche Eikrem, Jill E Gready, Uwe John, William Lanier, Erika A Lindquist, Susan Lucas, Klaus F X Mayer, Herve Moreau, Fabrice Not, Robert Otillar, Olivier Panaud, Jasmyn Pangilinan, Ian Paulsen, Benoit Piegu, Aaron Poliakov, Steven Robbens, Jeremy Schmutz, Eve Toulza, Tania Wyss, Alexander Zelensky, Kemin Zhou, E Virginia Armbrust, Debashish Bhattacharya, Ursula W Goodenough, Yves van de Peer, Igor V Grigoriev

Science 324:268-72 (2009)10.1126/science.1167222

2009
Tropheryma whipplei glycosylation in the pathophysiologic profile of Whipple's disease.

Cyrille J Bonhomme, Patricia Renesto, Benoît Desnues, Eric Ghigo, Hubert Lepidi, Patrick Fourquet, Florence Fenollar, Bernard Henrissat, Jean-Louis Mege, Didier Raoult

Journal of Infectious Diseases 199:1043-52 (2009)10.1086/597277

2009
The 2008 update of the Aspergillus nidulans genome annotation: a community effort.

Jennifer Russo Wortman, Jane Mabey Gilsenan, Vinita Joardar, Jennifer Deegan, John Clutterbuck, Mikael R Andersen, David Archer, Mojca Bencina, Gerhard Braus, Pedro Coutinho, Hans von Döhren, John Doonan, Arnold J M Driessen, Pawel Durek, Eduardo Espeso, Erzsébet Fekete, Michel Flipphi, Carlos Garcia Estrada, Steven Geysens, Gustavo Goldman, Piet W J de Groot, Kim Hansen, Steven D Harris, Thorsten Heinekamp, Kerstin Helmstaedt, Bernard Henrissat, Gerald Hofmann, Tim Homan, Tetsuya Horio, Hiroyuki Horiuchi, Steve James, Meriel Jones, Levente Karaffa, Zsolt Karányi, Masashi Kato, Nancy Keller, Diane E Kelly, Jan a K W Kiel, Jung-Mi Kim, Ida J van der Klei, Frans M Klis, Andriy Kovalchuk, Nada Krasevec, Christian P Kubicek, Bo Liu, Andrew Maccabe, Vera Meyer, Pete Mirabito, Márton Miskei, Magdalena Mos, Jonathan Mullins, David R Nelson, Jens Nielsen, Berl R Oakley, Stephen A Osmani, Tiina Pakula, Andrzej Paszewski, Ian Paulsen, Sebastian Pilsyk, István Pócsi, Peter J Punt, Arthur F J Ram, Qinghu Ren, Xavier Robellet, Geoff Robson, Bernhard Seiboth, Piet van Solingen, Thomas Specht, Jibin Sun, Naimeh Taheri-Talesh, Norio Takeshita, Dave Ussery, Patricia A Vankuyk, Hans Visser, Peter J I van de Vondervoort, Ronald P de Vries, Jonathan Walton, Xin Xiang, Yi Xiong, an Ping Zeng, Bernd W Brandt, Michael J Cornell, Cees a M J J van den Hondel, Jacob Visser, Stephen G Oliver, Geoffrey Turner

Fungal Genetics and Biology 46 Suppl 1:S2-13 (2009)10.1016/j.fgb.2008.12.003

2009
The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion

Jeffrey J. Coleman, Steve D. Rounsley, Marianela Rodriguez-Carres, Alan Kuo, Catherine C. Wasmann, Jane Grimwood, Jeremy Schmutz, Masatoki Taga, Gerard J. White, Shiguo Zhou, David C. Schwartz, Michael Freitag, Li-Jun Ma, Etienne Danchin, Bernard Henrissat, Pedro Coutinho, David R. Nelson, Dave Straney, Carolyn A. Napoli, Bridget M. Barker, Michael Gribskov, Martijn Rep, Scott Kroken, István Molnár, Christopher Rensing, John C. Kennell, Jorge Zamora, Mark L. Farman, Eric U. Selker, Asaf Salamov, Harris Shapiro, Jasmyn Pangilinan, Erika Lindquist, Casey Lamers, Igor V. Grigoriev, David M. Geiser, Sarah F. Covert, Esteban Temporini, Hans D. Vanetten

PLoS Genetics 5:e1000618 (2009)

2008

2008
Glycosyltransferases, glycoside hydrolases: surprise, surprise!

Bernard Henrissat, Gerlind Sulzenbacher, Yves Bourne

Current Opinion in Structural Biology (2008)10.1016/j.sbi.2008.09.003

2008
Glycosyltransferases, glycoside hydrolases: surprise, surprise!

Bernard Henrissat, Gerlind Sulzenbacher, Yves Bourne

Current Opinion in Structural Biology 18:527-533 (2008)10.1016/j.sbi.2008.09.003

2008
The genome sequence of the model ascomycete fungus Podospora anserina.

Eric Espagne, Olivier Lespinet, Fabienne Malagnac, Corinne da Silva, Olivier Jaillon, Betina Porcel, Arnaud Couloux, Jean-Marc Aury, Béatrice Ségurens, Julie Poulain, Véronique Anthouard, Sandrine Grossetete, Hamid Khalili, Evelyne Coppin, Michelle Déquard-Chablat, Marguerite Picard, Véronique Contamine, Sylvie Arnaise, Anne Bourdais, Véronique Berteaux-Lecellier, Daniel Gautheret, Ronald de Vries, Evy Battaglia, Pedro Coutinho, Etienne Danchin, Bernard Henrissat, Riyad Khoury, Annie Sainsard-Chanet, Antoine Boivin, Bérangère Pinan-Lucarré, Carole Sellem, Robert Debuchy, Patrick Wincker, Jean Weissenbach, Philippe Silar

Genome Biology 9:R77 (2008)10.1186/gb-2008-9-5-r77

2008
Identification of a GH110 Subfamily of ␣1,3-Galactosidases: NOVEL ENZYMES FOR REMOVAL OF THE ␣3GAL XENOTRANSPLANTATION ANTIGEN

Qiyong Liu, Huaiping Yuan, Eric Bennett, Steven Levery, Edward Nudelman, Jean Spence, Greg Pietz, Kristen Saunders, Thayer White, Martin Olsson, Bernard Henrissat, Gerlind Sulzenbacher, Henrik Clausen

Journal of Biological Chemistry 283:8545-8554 (2008)10.1074/jbc.M709020200

2008
FOLy: An integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds

Anthony Levasseur, François Piumi, Pedro Coutinho, Corinne Rancurel, Michèle Asther, Michel Delattre, Bernard Henrissat, Pierre Pontarotti, Marcel Asther, Eric Record

Fungal Genetics and Biology 45:638-645 (2008)10.1016/j.fgb.2008.01.004

2008
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

Diego Martínez, Randy Berka, Bernard Henrissat, Markku Saloheimo, Mikko Arvas, Scott Bakker, Jarod Chapman, Olga Chertkov, Pedro Coutinho, Dan Cullen, Etienne Danchin, Igor Grigoriev, Paul Harris, Melissa Jackson, Christian Kubicek, Cliff Han, Isaac Ho, Luis Larrondo, Alfredo Lopez de Leon, Jon Magnuson, Sandy Merino, Monica Misra, Beth Nelson, Nicholas Putman, Barbara Robbertse, Asaf Salamov, Monika Schmoll, Astrid Terry, Nina Thayer, Ann Westerholm-Parvinen, Conrad Schoch, Jian Yao, Ravi Barabote, Mary Anne Nelson, Chris Detter, David Bruce, Cheryl Kuske, Gary Xie, Paul Richardson, Daniel Rokhsar, Susan Lucas, Edward Rubin, Nigel Dunn-Coleman, Michael Ward, Thomas Brettin

Nature Biotechnology 26:553-560 (2008)10.1038/nbt1403

2008
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

Pierre Abad, Jerome Gouzy, Jean-Marc Aury, Philippe Castagnone, Etienne Danchin, Emeline Deleury, Laetitia Perfus-Barbeoch, Véronique Anthouard, François Artiguenave, Vivian C. Blok, Marie-Cécile Caillaud, Pedro Coutinho, Corinne da Silva, Francesca de Luca, Florence Deau, Magali Esquibet, Timothée Flutre, Jared V. Goldstone, Noureddine Hamamouch, Tarek Hewezi, Olivier Jaillon, Claire Jubin, Paola Leonetti, Marc Magliano, Tom R. Maier, Gabriel Markov, Paul Mcveigh, Graziano Pesole, Julie Poulain, Marc Robinson-Rechavi, Erika Sallet, Béatrice Ségurens, Delphine Steinbach, Tom Tytgat, Edgardo Ugarte, Cyril van Ghelder, Pasqua Veronico, Thomas J. Baum, Mark Blaxter, Teresa Bleve-Zacheo, Eric L. Davis, J.J. Ewbank, Bruno Favery, Eric Grenier, Bernard Henrissat, John T. Jones, Vincent Laudet, Aaron G. Maule, Hadi Quesneville, Marie-Noelle Rosso, Thomas Schiex, Geert Smant, Jean Weissenbach, Patrick Wincker

Nature Biotechnology 26:909-915 (2008)10.1038/nbt.1482

2008
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

F. Martin, A. Aerts, D. Ahrén, A. Brun, E. G. J. Danchin, F. Duchaussoy, J. Gibon, Annegret Kohler, E. Lindquist, V. Pereda, A. Salamov, H. J. Shapiro, J. Wuyts, D. Blaudez, M. Buée, P. Brokstein, B. Canbäck, D. Cohen, P. E. Courty, P. M. Coutinho, C. Delaruelle, J. C. Detter, Aurélie Deveau, S. Difazio, Sébastien Duplessis, L. Fraissinet-Tachet, E. Lucic, P. Frey-Klett, Claire Veneault-Fourrey, I. Feussner, G. Gay, J. Grimwood, P. J. Hoegger10, P. Jain, S. Kilaru, J. Labbé, Y. C. Lin, V. Legué, F. Le Tacon, R. Marmeisse, D. Melayah, B. Montanini, M. Muratet, U. Nehls, H. Niculita-Hirzel, M. P. Oudot-Le Secq, M. Peter, H. Quesneville, B. Rajashekar, M. Reich, N. Rouhier, J. Schmutz, T. Yin, M. Chalot, Bernard Henrissat, U. Kües, S. Lucas, Y. van de Peer, G. K. Podila, A. Polle, P. J. Pukkila, P. M. Richardson, P. Rouzé, I. R. Sanders, J. E. Stajich, A. Tunlid, G. Tuskan, I. V. Grigoriev

Nature 452:88-93 (2008)10.1038/nature06556

2007

2007
Des glycosidases bactériennes pour du sang universel

Gerlind Sulzenbacher, Yves Bourne, Bernard Henrissat

médecine/sciences (2007)10.1051/medsci/20072389703

2007
Bacterial glycosidases for the production of universal red blood cells

Qiyong Liu, Gerlind Sulzenbacher, Huaiping Yuan, Eric Bennett, Greg Pietz, Kristen Saunders, Jean Spence, Edward Nudelman, Steven Levery, Thayer White, John Neveu, William Lane, Yves Bourne, Martin Olsson, Bernard Henrissat, Henrik Clausen

Nature Biotechnology (2007)10.1038/nbt1298

2007
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

Herman Pel, Johannes de Winde, David Archer, Paul Dyer, Gerald Hofmann, Peter Schaap, Geoffrey Turner, Ronald de Vries, Richard Albang, Kaj Albermann, Mikael Andersen, Jannick Bendtsen, Jacques Benen, Marco van den Berg, Stefaan Breestraat, Mark Caddick, Roland Contreras, Michael Cornell, Pedro Coutinho, Etienne Danchin, Alfons Debets, Peter Dekker, Piet van Dijck, Alard van Dijk, Lubbert Dijkhuizen, Arnold Driessen, Christpohe d'Enfert, Steven Geysens, Coenie Goosen, Gert Groot, Piet de Groot, Thomas Guillemette, Bernard Henrissat, Marga Herweijer, Johannes van den Hombergh, Cees van den Hondel, Rene van der Heijden, Rachel van der Kaaij, Frans Klis, Harrie Kools, Christian Kubicek, Patricia van Kuyk, Jürgen Lauber, Xin Lu, Marc van den Maarel, Rogier Meulenberg, Hildegard Menke, Martin Mortimer, Jens Nielsen, Stephen Oliver, Maurien Olsthoorn, Karoly Pal, Noël van Peij, Arthur Ram, Ursula Rinas, Johannes Roubos, Cees Sagt, Monika Schmoll, Jibin Sun, David Ussery, János Varga, Wouter Vervecken, Peter van de Vondervoort, Holger Wedler, Han Wösten, An-Ping Zeng, Albert van Ooyen, Jaap Visser, Hein Stam

Nature Biotechnology 25:221-231 (2007)10.1038/nbt1282

2006

2006
Crystal structure of inactivated Thermotoga maritima invertase in complex with the trisaccharide substrate raffinose

Francois Alberto, Emmanuelle Jordi, Bernard Henrissat, Mirjam Czjzek

Biochemical Journal 395:457-462 (2006)10.1042/BJ20051936

2006
Dividing the large glycoside hydrolase family 13 into subfamilies: towards improved functional annotations of alpha-amylase-related proteins

Mark R. Stam, Etienne Danchin, Corinne Rancurel, Pedro Coutinho, Bernard Henrissat

Protein Engineering, Design and Selection 19:555-562 (2006)10.1093/protein/gzl044

2006
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)

Gerald A. Tuskan, Stephen Difazio, Stefan Jansson, Jörg Bohlmann, Igor Grigoriev, Uffe Hellsten, Nicholas Putnam, Steven Ralph, Stephane Rombauts, Asaf Salamov, Jacquie Schein, Lieven Sterck, Andrea Aerts, Rishikesh Bhalerao, Rupali Bhalerao, Damien Blaudez, Wout Boerjan, Annick Brun-Jacob, Amy Brunner, Victor Busov, Malcolm Campbell, John Carlson, Michel Chalot, Jarod Chapman, Gwo-Liang Chen, D. Cooper, Pedro Coutinho, Jérémy Couturier, Sarah Covert, Quentin Cronk, R. Cunningham, John Davis, S. Degroeve, Annabelle Dejardin, Claude Depamphilis, John Detter, Bill Dirks, Inna Dubchak, Sébastien Duplessis, Jürgen Ehlting, Brian Ellis, Karla Gendler, David Goodstein, Michael Gribskov, Jane Grimwood, Andrew Groover, Lee Gunter, Britta Hamberger, Berthold Heinze, Ykä Helariutta, Bernard Henrissat, Dawn Holligan, Robert Holt, Wayne Huang, Nurul Islam-Faridi, Steven Jones, Matthew Jones-Rhoades, Richard Jorgensen, Chandrashekha Joshi, Jaakko Kangasjärvi, Jan Karlsson, Colin Kelleher, Robert Kirkpatrick, Matias Kirst, Annegret Kohler, Udaya Kalluri, Frank Larimer, Jim Leebens-Mack, Jean-Charles Leplé, Philip Locascio, Yunian Lou, Susan Lucas, Francis Martin, Barbara Montanini, Carolyn Napoli, David R Nelson, C. Dana Nelson, Kaisa Nieminen, Ove Nilsson, Veronica Pereda, Gary Peter, Ryan Philippe, Gilles Pilate, Alexandre Poliakov, Jane Razumovskaya, Paul Richardson, Cécile Rinaldi, Kermit Ritland, Pierre Rouzé, Dmitriy Ryaboy, Jeremy Schmutz, J. Schrader, Bo Segerman, Heesun Shin, Asim Siddiqui, Fredrik Sterky, Astrid Terry, Chung-Jui Tsai, Edward Uberbacher, Per Unneberg, Jorma Vahala, Kerr Wall, Susan Wessler, Guojun Yang, Tongming Yin, Carl Douglas, Marco Marra, Goran Sandberg, Yves van de Peer, Daniel S. Rokhsar

Science 313:1596-1604 (2006)10.1126/science.1128691

2005

2005
Protein disorder: conformational distribution of the flexible linker in a chimeric double cellulase.

Von Ossowski I, Eaton Jt, M. Czjzek, Perkins Sj, Frandsen Tp, M. Schulein, P. Panine, Bernard Henrissat, V. Receveur-Brechot

Biophysical Journal 88:2823-2832 (2005)

2004

2004
The Three-dimensional Structure of Invertase (β-Fructosidase) from Thermotoga maritima Reveals a Bimodular Arrangement and an Evolutionary Relationship between Retaining and Inverting Glycosidases

Francois Alberto, Christophe Bignon, Gerlind Sulzenbacher, Bernard Henrissat, Mirjam Czjzek

Journal of Biological Chemistry 279:18903-18910 (2004)10.1074/jbc.M313911200

2004
Crystal Structure of Thermotoga maritima ␣-L-Fucosidase INSIGHTS INTO THE CATALYTIC MECHANISM AND THE MOLECULAR BASIS FOR FUCOSIDOSIS

Gerlind Sulzenbacher, Christophe Bignon, Takeshi Nishimura, Chris Tarling, Stephen Withers, Bernard Henrissat, Yves Bourne

Journal of Biological Chemistry (2004)10.1074/jbc.M313783200

2003

2003
Identification of the Catalytic Nucleophile of the Family 29 α-L-Fucosidase from Thermotoga maritima through Trapping of a Covalent Glycosyl-Enzyme Intermediate and Mutagenesis

Chris Tarling, Shouming He, Gerlind Sulzenbacher, Christophe Bignon, Yves Bourne, Bernard Henrissat, Stephen Withers

Journal of Biological Chemistry (2003)10.1074/jbc.M306610200

2003
Why are there so many carbohydrate-active enzyme-related genes in plants?

Pedro Coutinho, Mark Stam, Eric Blanc, Bernard Henrissat

Trends in Plant Science 8:563-5 (2003)

2002

2002
Molecular characterization of a cell wall-associated beta(1-3)endoglucanase of Aspergillus fumigatus.

Isabelle Mouyna, Jacqueline Sarfati, P. Recco, Thierry Fontaine, Bernard Henrissat, Jean-Paul Latgé

Medical Mycology 40:455-64 (2002)10.1080/mmy.40.5.455.464

2001

2001
Optimized mixtures of recombinant Humicola insolens cellulases for the biodegradation of crystalline cellulose

C. Boisset, C. Petrequin, H. Chanzy, Bernard Henrissat, M. Schulein

Biotechnology and Bioengineering 339-345 (2001)

2000

2000
Identification of the catalytic residues of the first family of beta(1-3)glucanosyltransferases identified in fungi

Isabelle Mouyna, Michel Monod, Thierry Fontaine, Bernard Henrissat, Barbara Léchenne, Jean-Paul Latge

Biochemical Journal 347:741-747 (2000)10.1042/bj3470741

2000
Crystal structures of human pancreatic alpha-amylase in complex with carbohydrate and proteinaceous inhibitors.

F Nahoum, G Roux, A Anton, P. Rouge, A Puigserver, B Bischoff, Bernard Henrissat, F. Payan

Biochemical Journal 201-8 (2000)

2000
High resolution X-ray crystallography shows that ascorbate is a cofactor for myrosinase and substitutes for the function of the catalytic base

W.P. Burmeister, S. Cottaz, P. Rollin, A. Vasella, Bernard Henrissat

Journal of Biological Chemistry 39385-39393 (2000)

1999

1999
Digestion of crystalline cellulose substrates by the Clostridium thermocellum cellulosomes: structural and morphological aspects

C. Boisset, H. Chanzy, Bernard Henrissat, R. Lamed, Y. Shoham, E. Bayer

Biochemical Journal 829-835 (1999)

1999
Dynamic light scattering evidence for a lignand-induced motion between the two domains of glucoamylase G1 of Aspergillus niger using heterobivalent substrate analogues

N. Payre, S. Cottaz, C. Boisset, R. Borsali, B. Svensson, Bernard Henrissat, H. Driguez

Angewandte Chemie International Edition 974-977 (1999)

1998

1998
The k-carrageenase of the marine bacterium Cytophaga drobachiensis: structural and phylogenetic relationships within family-16 glycoside hydrolases

T. Barbeyron, A. Gerard, P. Potin, Bernard Henrissat, B. Kloareg

Journal of Molecular Evolution 528-537 (1998)

1998
Endogenous cellulases in animals: isolation of β-1,4-endoglucanase genes from two species of plant-parasitic cyst nematodes

G. Smant, J.P. Stokkermans, Y. Yitang, J.M. de Boer, T. Baum, W. Xiaohong, R.S. Jussey, F.J. Gommers, Bernard Henrissat, E.L. Davis, J. Helder, A. Shots, J. Gakker

Proceedings of the National Academy of Sciences of the United States of America 4906-4911 (1998)

1998
Glycosidase families

Bernard Henrissat

Biochem. Soc. Trans. 153-156 (1998)

1998
A scheme for designating enzymes that hydrolyse the polysaccharides in the cell-walls of plants

Bernard Henrissat, T.T. Teeri, R.A. Warren

FEBS Letters 352-354 (1998)

1998
A b(1-3) glucanosyltransferase isolated from the cell wall of Aspergillus fumigatus is an homolog of the yeast BGL2

Isabelle Mouyna, Robert P. Hartland, Thierry Fontaine, Michel Diaquin, Catherine Simenel, Muriel Delepierre, Bernard Henrissat, Jean-Paul Latgé

Microbiology 3171-3180 (1998)10.1099/00221287-144-11-3171

1997

1997
Evidence that galactanase A from Pseudomonas fluorescens subspecies cellulosa is a retaining family 53 glycosyl hydrolase in which E161 and E270 are the catalytic residues

K.L. Braithwaite, T. Barna, T.D. Spurway, S.J. Charnock, G.W. Black, N. Hughes, J.H. Lakey, R. Virden, G.P. Hazlewood, Bernard Henrissat, H.J. Gilbert

Biochemistry 15489-15507 (1997)

1997
A bifunctionalized fluorogenic tetrasaccharide as a substrate to study cellulases

S. Armand, S. Drouillard, M. Schulein, Bernard Henrissat, H. Driguez

Journal of Biological Chemistry 2709-2713 (1997)

1997
Nomenclature for sugar-binding subsites in glycosyl hydrolases

G. Davies, K.S. Wilson, Bernard Henrissat

Biochemical Journal 557-559 (1997)

1997
Identification of candidate active site residues in lysosomal β-hexosaminidase. J. Biol. Chem.

M.J. Fernandes, D. Leclerc, Bernard Henrissat, C.E. Vorgias, R. Gravel, P. Hechtman, F. Kaplan

Journal of Biological Chemistry 814-820 (1997)

1997
Serratia marcescens chitobiase is a retaining glycosidase utilizing substrate acetamido group participation

S. Drouillard, S. Armand, G.J. Davies, C. Vorgias, Bernard Henrissat

Biochemical Journal 945-949 (1997)

1997
Domain evolution in the α-amylase superfamily

S. Janecek, B. Svensson, Bernard Henrissat

Journal of Molecular Evolution 322-331 (1997)

1997
Structural and sequence-based classification of glycoside hydrolases

Bernard Henrissat, G. Davies

Current Opinion in Structural Biology 637-644 (1997)

1997
A classification of nucleotide-diphospho-sugar glycosyltransferases based on amino acid sequence similarities

J.A. Campbell, G.J. Davies, V. Bulone, Bernard Henrissat

Biochemical Journal 929-939 (1997)

1997
Parallel-up structure evidences the molecular directionality during biosynthesis of bacterial cellulose

M. Koyama, W. Helbert, T. Imai, J. Sugiyama, Bernard Henrissat

Proceedings of the National Academy of Sciences of the United States of America 9091-9095 (1997)

1997
An ultrastructural study of the interaction of an endoglucanase from Humicola insolens with cotton fibres

C. Boisset, H. Chanzy, M. Schulein, Bernard Henrissat

Cellulose Jul-20 (1997)

1997
A new cellulase family

Bernard Henrissat

Molecular Microbiology 847-849 (1997)

1997
Deciphering protein sequence information through hydrophobic cluster analysis (HCA): current status and perspectives

I. Callebaut, G. Labesse, P. Durand, A. Poupon, L. Canard, J. Chomilier, Bernard Henrissat, J.P. Mornon

Cellular and Molecular Life Sciences 621-645 (1997)

1997
Active-site motifs of lysosomal acid hydrolases: invariant features of clan GH-A of glycosyl hydrolases deduced from hydrophobic cluster analysis

P. Durand, P. Lehn, I. Callebaut, S. Fabrega, Bernard Henrissat, J.P. Mornon

Glycobiology 277-284 (1997)

1996

1996
A modular family 19 chitinase found in the prokaryotic organism Streptomyces griseus HUT6037

T. Ohno, S. Armand, T. Hata, N. Nikaidou, Bernard Henrissat, M. Mitsutomi, T. Watanabe

Journal of Bacteriology 5065-5070 (1996)

1996
Stereochemical course and reaction products of the action of β-xylosidase form Thermoanaerobacterium saccharolyticum strain B6A-RI

S. Armand, C. Vieille, C. Gey, A. Heyraud, J.G. Zeikus, Bernard Henrissat

European Journal of Biochemistry 706-713 (1996)

1996
Endoglucanase II (EGII) of Penicillium janthinellum: cDNA sequence, heterologous expression and promotor analysis

G. Mernitz, A. Koch, Bernard Henrissat, G. Schultz

Current Genetics 490-195 (1996)

1996
Towards a classification of glycosyl transferases based on amino acid sequence similarities. Prokaryotic α-mannosyl-transferases

R. Geremia, E. Petroni, L. Ielpi, Bernard Henrissat

Biochemical Journal 133-138 (1996)

1996
Cloning and characterization of a xylanase gene from corn strains of Erwinia chrysanthemi

N.T. Keen, C. Boyd, Bernard Henrissat

Molecular Plant-Microbe Interactions 651-657 (1996)

1996
Cloning, sequencing and overexpression in Escherichia coli of the alginate lyase-encoding algi gene of Pseudomonas alginivora. Identification of three alginate lyases families

F. Chavagnat, C. Duez, M. Guinand, P. Potin, T. Barbeyron, Bernard Henrissat, J. Wallach, J.M. Ghuysen

Biochemical Journal 575-583 (1996)

1996
Mechanism-based inhibition and stereochemistry of glucosinolate hydrolysis by myrosinase

S. Cottaz, Bernard Henrissat, H. Driguez

Biochemistry 15256-15259 (1996)

1996
Plant chitinase use two different hydrolytic mechanisms

B. Iseli, S. Armand, T. Boller, J.M. Neuhaus, Bernard Henrissat

FEBS Letters 186-188 (1996)

1996
Updating the sequence-based classification of glycosyl hydrolases

Bernard Henrissat, A. Bairoch

Biochemical Journal 695-696 (1996)

1996
On the classification of modular proteins

Bernard Henrissat, P. Bork

Protein Eng. 725-726 (1996)

1996
Mannanase A from Pseudomonas fluorescens ssp. cellulosa is a retaining glycosyl hydrolase in which E212 and E320 are the putative catalytic residues

D.N. Bolam, N. Hughes, R. Virden, J.H. Lakey, G.P. Hazlewood, Bernard Henrissat, K.L. Braithwaite, H.J. Gilbert

Biochemistry 16195-16204 (1996)

1996
Electron microscopic investigation of the diffusion of Bacillus licheniformis α-amylase into corn starch granules

W. Helbert, M. Schulein, Bernard Henrissat

International Journal of Biological Macromolecules 165-169 (1996)

1995

1995
Families, superfamilies and subfamilies of glycosyl hydrolases

Bernard Henrissat, A. Romeu

Biochemical Journal 350-351 (1995)

1995
Structure-based multiple alignment of extracellular pectate lyase sequences

S.E. Heffron, Bernard Henrissat, M.D. Yoder, S.E. Lietzke, F. Jurnak

Molecular Plant-Microbe Interactions 331-334 (1995)

1995
Docking of congo red to the surface of crystalline cellulose using molecular mechanics

S. Woodcock, Bernard Henrissat, J. Sugiyama

Biopolymers 201-210 (1995)

1995
Structure of oligosaccharide-bound forms of the endoglucanase V from Humicola insolens at 1.9 Ang. resolution

G.J. Davies, S.P. Tolley, Bernard Henrissat, C. Hjort, M. Schulein

Biochemistry 16210-16220 (1995)

1995
Stereochemistry of chitin hydrolysis by a plant chitinase/lysozyme and x-ray structure of a complex with allosamidin: evidence for substrate assisted catalysis

A.C. Terwisscha van Scheltinga, S. Armand, K.H. Kalk, A. Isogai, Bernard Henrissat, B.W. Dijkstra

Biochemistry 15619-15623 (1995)

1995
Dynamic light scattering study of the two-domain structure of Humicola insolens endoglucanase V

C. Boisset, R. Borsali, M. Schulein, Bernard Henrissat

FEBS Letters 49-52 (1995)

1995
The crystal structure of methyl β-cellotrioside monohydrate 0.25 ethanolate and its relationship to cellulose II

S. Raymond, Bernard Henrissat, D. Tran Qui, A. Kvick, H. Chanzy

Carbohydrate Research 209-229 (1995)

1995
Family A cellulases: two essential tryptophan residues in endoglucanase III from Trichoderma reesei

R. Macarron, Bernard Henrissat, M. Claeyssens

BBA - Biochimica et Biophysica Acta 187-190 (1995)

1995
Structures and mechanisms of glycosyl hydrolases

G. Davies, Bernard Henrissat

Structure 853-859 (1995)

1995
Cloning and expression in Saccharomyces cerevisiae of a Trichoderma reesei β-mannanase gene containing a cellulose binding domain

H. Stalbrand, A. Saloheimo, J. Vehmannpera, Bernard Henrissat, M. Penttila

Applied and Environmental Microbiology 1090-1097 (1995)

1995
Processing and hydrolytic mechanism of cgkA-encoded κ-carrageenase of Alteromonas carrageenovora

P. Potin, C. Richard, T. Barbeyron, Bernard Henrissat, C. Gey, Y. Petillot, E. Forest, O. Dideberg, C. Rochas, B. Kloareg

European Journal of Biochemistry 971-975 (1995)

1995
Functional implications of structure-based sequence alignment of proteins in the extracellular pectate lyase superfamily.

Bernard Henrissat, S.E. Heffron, M.D. Yoder, S.E. Lietzke, F. Jurnak

Plant Physiology 963-976 (1995)

1995
Cloning and characterization of the BgxA gene from Erwinia chrysanthemi D1 which encodes a β-glucosidase/xylosidase enzyme

S. Vroemen, J. Heldens, C. Boyd, Bernard Henrissat, N.T. Keen

Mol. Gen. Genet. 465-477 (1995)

1995
Multidomain architecture of β-glycosyl transferases: implications for mechanism of action

I.M. Saxena, R.M. Brown, M. Fevre, R. Geremia, Bernard Henrissat

Journal of Bacteriology 1419-1424 (1995)

1995
Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases

Bernard Henrissat, I. Callebaut, S. Fabrega, P. Lehn, J.P. Mornon, G. Davies

Proceedings of the National Academy of Sciences of the United States of America 7090-7094 (1995)

1994

1994
Cellulases and their interaction with cellulose

Bernard Henrissat

Cellulose 169-196 (1994)

1994
Stereochemical course of the hydrolysis reaction catalyzed by chitinases A1 and D from Bacillus circulans WL-12

S. Armand, H. Tomita, A. Heyraud, C. Gey, T. Watanabe, Bernard Henrissat

FEBS Letters 177-180 (1994)

1994
1994
Evidence for a general role for high affinity non-catalytic cellulose binding domains in microbial plant cell wall hydrolases

S.J. Millward-Sadler, D.M. Poole, Bernard Henrissat, G.P. Hazlewood, H.J. Gilbert

Molecular Microbiology 375-382 (1994)

1994
A novel, small endoglucanase gene, egl5, from Trichoderma reesei isolated by expression in yeast

A. Saloheimo, Bernard Henrissat, A.M. Hoffren, O. Teleman, M. Penttila

Molecular Microbiology 219-228 (1994)

1993

1993
Stereochemistry, specificity and kinetics of the hydrolysis of reduced cellodextrins by nine cellulases

C. Schou, G. Rasmussen, M.B. Kaltoft, Bernard Henrissat, M. SchÜlein

European Journal of Biochemistry 947-953. (1993)

1993
Characterization of the active site and thermostability regions of endoxylanase from Termoanaero bacterium saccharolyticum strain B6A-RI

Y.E. Lee, S.E. Lowe, Bernard Henrissat, J.G. Zeikus

Journal of Bacteriology 5890-5898 (1993)

1993
Comparison of three algorithms for the assignment of secondary structure in proteins: the advantages of a consensus assignment

N. Colloc'H, C. Etchebest, E. Thoreau, Bernard Henrissat, J.P. Mornon

Protein Eng. 377-382 (1993)

1993
Identification of an essential glutamate residue in the active site of endoglucanase III from Trichoderma reesei

R. Macarron, J. van Beeumen, Bernard Henrissat, I. de la Mata, M. Claeyssens

FEBS Letters 137-140 (1993)

1993
Characteristics of an exochitinase from Streptomyces olivaceoviridis, its correponding gene putative protein domains and evolutionary relationship to other chitinases

H. Blaak, J. Schellmann, S. Walter, Bernard Henrissat, H. Schrempf

European Journal of Biochemistry 659-669 (1993)

1993
Visualization of the adsoption of a bacterial endo-β-1-4-glucanase and its isolated cellulose-binding domain to crystalline cellulose

N.R. Gilkes, D.G. Kilburn, R.C. Miller, R.A.J. Warren, J. Sugiyama, H. Chanzy, Bernard Henrissat

International Journal of Biological Macromolecules 347-351 (1993)

1993
1993
4-thiocello-oligosaccharides: their synthesis and use as inhibitors of cellulases

C. Schou, G. Rasmussen, M. Schulein, Bernard Henrissat, H. Driguez

Carbohydrate Research 743-752 (1993)

1993
Influenza B virus neuraminidase can synthesize its own inhibitor

W.P. Burmeister, Bernard Henrissat, C. Bosso, S. Cusack, R.W.H. Ruigrok

Structure 19-26 (1993)

1993
MANSEK and SUNHCA. Two interactive programs for the hydrophobic cluster analysis of protein sequences

L. Lemesle-Varloot, C. Gaboriaux, Anne Morgat, G. Pantel, J.P. Mornon, S. Lavaitte, F. Lestang, Bernard Henrissat

Bioinformatics 37-44 (1993)

1992

1992
Detection of secondary structure elements in proteins by hydrophobic analysis

S. Woodcock, J.P. Mornon, Bernard Henrissat

Protein Eng. 629-635 (1992)

1992
The adsorption of a bacterial cellulase and its two isolated domains to crystalline cellulose

N.R. Gilkes, E. Jervis, Bernard Henrissat, B. Tekant, R.C. Miller, R.A.J. Warren, D.G. Kilburn

Journal of Biological Chemistry 6743-6749 (1992)

1992
Stereochemistry of the hydrolysis reaction catalyzed by endoglucanase Z from Erwinia chrysanthemi

F. Barras, I. Bortoli-German, M. Bauzan, J. Rouvier, C. Gey, A. Heyraud, Bernard Henrissat

FEBS Letters 145-148 (1992)

1991

1991
Domains in microbial β-1,4-glycanases : sequence conservation, function and enzyme families

N.R. Gilkes, Bernard Henrissat, D.G. Kilburn, R.C. Miller, R.A.J. Warren

Microbiol. Rev. 303-315 (1991)

1991
Sequence homology between a β-galactosidase and some β-glucosidases

Bernard Henrissat

Prot. Seq. Data Anal. 61-62 (1991)

1991
1991
Structural and functional relationships in two families of β-1,4-glycanases

N.R. Gilkes, M. Claeyssens, R. Aebersold, Bernard Henrissat, A. Meinke, H.D. Morrison, D.G. Kilburn, R.A. Warren, R.C. Miller

European Journal of Biochemistry 367-377 (1991)

1990

1990
Hydrophobic cluster analysis : procedures to derive structural and functional information from 2-D-representation of protein sequences

L. Lemesle-Varloot, Bernard Henrissat, C. Gaboriaud, V. Bissery, Anne Morgat, J.P. Mornon

Biochimie 555-574 (1990)

1990
Weak sequence homologies among chitinases detected by clustering analysis

Bernard Henrissat

Protein Seq. Data Anal. 523-526 (1990)

1990
Structural homology among the peroxidase enzyme family revealed by hydrophobic cluster analysis

Bernard Henrissat, M. Saloheimo, S. Lavaitte, J.K.C. Knowles

Proteins - Structure, Function and Bioinformatics 251-257 (1990)

1990
CelS : a novel endoglucanase identified from Erwinia carotovora subsp. Carotovora

H.T. Saarilahti, Bernard Henrissat, E.T. Palva

Gene 9-14 (1990)

1990
Nucleotide sequence of the engXCA gene encoding the major endoglucanase of Xanthomonas campestris pv. campestris

C.L. Gough, J.M. Dow, J. Keen, Bernard Henrissat, M.J. Daniels

Gene 53-59 (1990)

1990
HCABAND : a computer program for the 2D-helical representation of protein sequences

Bernard Henrissat, E. Raimbaud, V. Tran, J.P. Mornon

Comput. Appl. Biosci. 3-5 (1990)

1989

1989
Hydrophobic cluster analysis of the primary sequences of a-amylases

E. Raimbaud, A. Buleon, S. Perez, Bernard Henrissat

International Journal of Biological Macromolecules 217-225 (1989)

1989
Cellulase families revealed by hydrophobic cluster analysis

Bernard Henrissat, M. Claeyssens, P. Tomme, L. Lemesle, J.P. Mornon

Gene 83-95 (1989)

1987

1987
A solid state 13C-NMR study of the cellulose-I-ethylenediamine complex.

Bernard Henrissat, R.H. Marchessault, M.G. Taylor, H. Chanzy

Polym. Commun. 113-115 (1987)

1987
Solid state 13C-NMR and electron microscopy study on the reversible transformation cellulose I →cellulose IIII in Valonia.

H. Chanzy, Bernard Henrissat, M. Vincendon, S.F. Tanner, P.S. Belton

Carbohydrate Research 1-11 (1987)

1986

1986
Structural changes of cellulose crystals during the reversible transformation cellulose I<->III1 in Valonia

H. Chanzy, Bernard Henrissat, R. Vuong, J.F. Revol

Holzforschung 25-30 (1986)

1985

1985
Precipitation and crystallization of cellulose doped with dyes.

I. Quenin, Bernard Henrissat

Macromolecular Rapid Communications 737-741 (1985)

1985
Synergism of cellulases from Trichoderma reesei in the degradation of cellulose.

Bernard Henrissat, H. Driguez, C. Viet, M. Schulein

Bio/technology 722-726 (1985)

1984

1984
Colloidal gold labelling of 1,4-β-D-glucan cellobiohydrolase absorbed on cellulose substrates

H. Chanzy, Bernard Henrissat, R. Vuong

FEBS Letters 193-197 (1984)

1983

1983
Stereochemistry of the hydrolysis of α,α-trehalose by trehalase using a labelled substrate

J. Defaye, H. Driguez, Bernard Henrissat, E. Bar-Guilloux

Carbohydrate Research 265-273 (1983)

1983
The action of 1,4-β-D-glucan cellobiohydrolase on Valonia cellulose microcrystals: an electron microscopic study

H. Chanzy, Bernard Henrissat, R. Vuong, M. Schulein

FEBS Letters 113-118 (1983)

1983
Electron microscopy study of the enzymic hydrolysis of Valonia cellulose

H. Chanzy, Bernard Henrissat

Carbohydrate Polymers 161-173 (1983)

1981

1981
A novel synthesis of 5-thio-D-glucose.

H. Driguez, Bernard Henrissat

Tetrahedron Letters 5061-5062 (1981)

1980

1978