Bernard Henrissat
Directeur de recherche émérite
Équipe : Glycogénomique
Publications
2024
Ruminococcus torques is a keystone degrader of intestinal mucin glycoprotein, releasing oligosaccharides used by Bacteroides thetaiotaomicron
Sadie Schaus, Gabriel Vasconcelos Pereira, Ana Luis, Emily Madlambayan, Nicolas Terrapon, Matthew Ostrowski, Chunsheng Jin, Bernard Henrissat, Gunnar Hansson, Eric Martens
mBio 15:e0003924 (2024)10.1128/mbio.00039-24
Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic food for malnutrition
Hao-Wei Chang, Evan Lee, Yi Wang, Cyrus Zhou, Kali Pruss, Suzanne Henrissat, Robert Chen, Clara Kao, Matthew Hibberd, Hannah Lynn, Daniel Webber, Marie Crane, Jiye Cheng, Dmitry Rodionov, Aleksandr Arzamasov, Juan Castillo, Garret Couture, Ye Chen, Nikita Balcazo, Carlito Lebrilla, Nicolas Terrapon, Bernard Henrissat, Olga Ilkayeva, Michael Muehlbauer, Christopher Newgard, Ishita Mostafa, Subhasish Das, Mustafa Mahfuz, Andrei Osterman, Michael Barratt, Tahmeed Ahmed, Jeffrey Gordon
Nature Microbiology 9:922-937 (2024)10.1038/s41564-024-01628-7
Characterization and structural study of a novel β‐ N ‐acetylgalactosaminidase from Niabella aurantiaca
Eduardo Sebastian Moreno Prieto, Sune Fjermedal, Suzana Siebenhaar, Marlène Vuillemin, Jesper Holck, Renaud Vincentelli, Garry Gippert, Casper Wilkens, Jens Preben Morth, Bernard Henrissat
FEBS Journal (2024)10.1111/febs.17042
2023
Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems
Lucas Auer, Marc Buée, Laure Fauchery, Vincent Lombard, Kerry Barry, Alicia Clum, Alex Copeland, Chris Daum, Brian Foster, Kurt Labutti, Vasanth Singan, Yuko Yoshinaga, Christine Martineau, Manuel Alfaro, Federico Castillo, J. Bosco Imbert, Lucia Ramírez, Raúl Castanera, Antonio Pisabarro, Roger Finlay, Björn Lindahl, Ake Olson, Armand Séguin, Annegret Kohler, Bernard Henrissat, Igor Grigoriev, Francis Martin
New Phytologist 242:1676-1690 (2023)10.1111/nph.19471
Exploring the hemicellulolytic properties and safety of Bacillus paralicheniformis as stepping stone in the use of new fibrolytic beneficial microbes
Serigne Inssa Ngom, Soufiane Maski, Bahia Rached, Taha Chouati, Lydie Oliveira Correia, Catherine Juste, Thierry Meylheuc, Bernard Henrissat, Elmostafa El Fahime, Mohamed Amar, Christel Béra-Maillet
Scientific Reports 13:22785 (2023)10.1038/s41598-023-49724-8
Bioactive glycans in a microbiome-directed food for children with malnutrition
Matthew Hibberd, Daniel Webber, Dmitry Rodionov, Suzanne Henrissat, Robert Chen, Cyrus Zhou, Hannah Lynn, Yi Wang, Hao-Wei Chang, Evan Lee, Janaki Lelwala-Guruge, Marat Kazanov, Aleksandr Arzamasov, Semen Leyn, Vincent Lombard, Nicolas Terrapon, Bernard Henrissat, Juan Castillo, Garret Couture, Nikita Bacalzo, Ye Chen, Carlito Lebrilla, Ishita Mostafa, Subhasish Das, Mustafa Mahfuz, Michael Barratt, Andrei Osterman, Tahmeed Ahmed, Jeffrey Gordon
Nature 625:157-165 (2023)10.1038/s41586-023-06838-3
Bioactive glycans in a microbiome-directed food for children with malnutrition
Matthew Hibberd, Daniel Webber, Dmitry Rodionov, Suzanne Henrissat, Robert Chen, Cyrus Zhou, Hannah Lynn, Yi Wang, Hao-Wei Chang, Evan Lee, Janaki Lelwala-Guruge, Marat Kazanov, Aleksandr Arzamasov, Semen Leyn, Vincent Lombard, Nicolas Terrapon, Bernard Henrissat, Juan Castillo, Garret Couture, Nikita Bacalzo, Ye Chen, Carlito Lebrilla, Ishita Mostafa, Subhasish Das, Mustafa Mahfuz, Michael Barratt, Andrei Osterman, Tahmeed Ahmed, Jeffrey Gordon
Nature 625:157-165 (2023)10.1038/s41586-023-06838-3
Bioactive glycans in a microbiome-directed food for children with malnutrition
Matthew Hibberd, Daniel Webber, Dmitry Rodionov, Suzanne Henrissat, Robert Chen, Cyrus Zhou, Hannah Lynn, Yi Wang, Hao-Wei Chang, Evan Lee, Janaki Lelwala-Guruge, Marat Kazanov, Aleksandr Arzamasov, Semen Leyn, Vincent Lombard, Nicolas Terrapon, Bernard Henrissat, Juan Castillo, Garret Couture, Nikita Bacalzo, Ye Chen, Carlito Lebrilla, Ishita Mostafa, Subhasish Das, Mustafa Mahfuz, Michael Barratt, Andrei Osterman, Tahmeed Ahmed, Jeffrey Gordon
Nature 625:157-165 (2023)10.1038/s41586-023-06838-3
Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi
Yogesh K Gupta, Francismar C Marcelino-Guimarães, Cécile Lorrain, Andrew Farmer, Sajeet Haridas, Everton Geraldo Capote Ferreira, Valéria S Lopes-Caitar, Liliane Santana Oliveira, Emmanuelle Morin, Stephanie Widdison, Connor Cameron, Yoshihiro Inoue, Kathrin Thor, Kelly Robinson, Elodie Drula, Bernard Henrissat, Kurt Labutti, Aline Mara Rudsit Bini, Eric Paget, Vasanth Singan, Christopher Daum, Cécile Dorme, Milan van Hoek, Antoine Janssen, Lucie Chandat, Yannick Tarriotte, Jake Richardson, Bernardo Do Vale Araújo Melo, Alexander H J Wittenberg, Harrie Schneiders, Stephane Peyrard, Larissa Goulart Zanardo, Valéria Cristina Holtman, Flavie Coulombier-Chauvel, Tobias I Link, Dirk Balmer, André N Müller, Sabine Kind, Stefan Bohnert, Louisa Wirtz, Cindy Chen, Mi Yan, Vivian Ng, Pierrick Gautier, Maurício Conrado Meyer, Ralf Thomas Voegele, Qingli Liu, Igor V Grigoriev, Uwe Conrath, Sérgio H Brommonschenkel, Marco Loehrer, Ulrich Schaffrath, Catherine Sirven, Gabriel Scalliet, Sébastien Duplessis, H. Peter van Esse
Nature Communications 14:1835 (2023)10.1038/s41467-023-37551-4
Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes
Matus Valach, Sandrine Moreira, Celine Petitjean, Corinna Benz, Anzhelika Butenko, Olga Flegontova, Anna Nenarokova, Galina Prokopchuk, Tom Batstone, Pascal Lapébie, Lionnel Lemogo, Matt Sarrasin, Paul Stretenowich, Pragya Tripathi, Euki Yazaki, Takeshi Nara, Bernard Henrissat, B Franz Lang, Michael Gray, Tom Williams, Julius Lukeš, Gertraud Burger
BMC Biology 21:99 (2023)10.1186/s12915-023-01563-9
Inducible CRISPR-targeted “knockdown” of human gut Bacteroides in gnotobiotic mice discloses glycan utilization strategies
Zachary Beller, Darryl Wesener, Timothy Seebeck, Janaki Guruge, Alexandra Byrne, Suzanne Henrissat, Nicolas Terrapon, Bernard Henrissat, Dmitry Rodionov, Andrei Osterman, Chris Suarez, Nikita Bacalzo, Ye Chen, Garret Couture, Carlito Lebrilla, Zhigang Zhang, Erik Eastlund, Caitlin Mccann, Gregory Davis, Jeffrey Gordon
Proceedings of the National Academy of Sciences of the United States of America 120:e2311422120 (2023)10.1073/pnas.2311422120
Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria
Neha Sahu, Boris Indic, Johanna Wong-Bajracharya, Zsolt Merényi, Huei-Mien Ke, Steven Ahrendt, Tori-Lee Monk, Sándor Kocsubé, Elodie Drula, Anna Lipzen, Balázs Bálint, Bernard Henrissat, Bill Andreopoulos, Francis Martin, Christoffer Bugge Harder, Daniel Rigling, Kathryn Ford, Gary Foster, Jasmyn Pangilinan, Alexie Papanicolaou, Kerrie Barry, Kurt Labutti, Máté Virágh, Maxim Koriabine, Mi Yan, Robert Riley, Simang Champramary, Krista Plett, Igor Grigoriev, Isheng Jason Tsai, Jason Slot, György Sipos, Jonathan Plett, László Nagy
Nature Microbiology 8:1668-1681 (2023)10.1038/s41564-023-01448-1
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae
Richard Dorrell, Alan Kuo, Zoltan Füssy, Elisabeth Richardson, Asaf Salamov, Nikola Zarevski, Nastasia Freyria, Federico Ibarbalz, Jerry Jenkins, Juan Jose Pierella Karlusich, Andrei Stecca Steindorff, Robyn Edgar, Lori Handley, Kathleen Lail, Anna Lipzen, Vincent Lombard, John Mcfarlane, Charlotte Nef, Anna Mg Novák Vanclová, Yi Peng, Chris Plott, Marianne Potvin, Fabio Rocha Jimenez Vieira, Kerrie Barry, Colomban de Vargas, Bernard Henrissat, Eric Pelletier, Jeremy Schmutz, Patrick Wincker, Joel Dacks, Chris Bowler, Igor Grigoriev, Connie Lovejoy
Life Science Alliance 6:e202201833 (2023)10.26508/lsa.202201833
A global phylogenomic analysis of the shiitake genus Lentinula
Sean Sierra-Patev, Byoungnam Min, Miguel Naranjo-Ortiz, Brian Looney, Zachary Konkel, Jason Slot, Yuichi Sakamoto, Jacob Steenwyk, Antonis Rokas, Juan Carro, Susana Camarero, Patricia Ferreira, Gonzalo Molpeceres, Francisco Ruiz-Dueñas, Ana Serrano, Bernard Henrissat, Elodie Drula, Karen Hughes, Juan Mata, Noemia Kazue Ishikawa, Ruby Vargas-Isla, Shuji Ushijima, Chris Smith, John Donoghue, Steven Ahrendt, William Andreopoulos, Guifen He, Kurt Labutti, Anna Lipzen, Vivian Ng, Robert Riley, Laura Sandor, Kerrie Barry, Angel Martínez, Yang Xiao, John Gibbons, Kazuhisa Terashima, Igor Grigoriev, David Hibbett
Proceedings of the National Academy of Sciences of the United States of America 120:e2214076120 (2023)10.1073/pnas.2214076120
Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus
Jonathan M Plett, Shingo Miyauchi, Emmanuelle Morin, Krista Plett, Johanna Wong-Bajracharya, Maira de Freitas Pereira, Alan Kuo, Bernard Henrissat, Elodie Drula, Dominika Wojtalewicz, Robert Riley, Jasmyn Pangilinan, William Andreopoulos, Kurt Labutti, Chris Daum, Yuko Yoshinaga, Laure Fauchery, Vivian Ng, Anna Lipzen, Kerrie Barry, Vasanth Singan, Jie Guo, Teresa Lebel, Mauricio Dutra Costa, Igor V Grigoriev, Francis Martin, Ian C Anderson, Annegret Kohler
Molecular Biology and Evolution 40:msad045 (2023)10.1093/molbev/msad045
Exogenous zinc mitigates salinity stress by stimulating proline metabolism in proso millet (Panicum miliaceum L.)
Naveed Ul Mushtaq, Khalid Alghamdi, Seerat Saleem, Inayatullah Tahir, Ahmad Bahieldin, Bernard Henrissat, Mohammed Khalid Alghamdi, Reiaz Ul Rehman, Khalid Rehman Hakeem
Frontiers in Plant Science 14:1053869 (2023)10.3389/fpls.2023.1053869
Conidium Specific Polysaccharides in Aspergillus fumigatus
Zhonghua Liu, Isabel Valsecchi, Rémy A Le Meur, Catherine Simenel, J. Iñaki Guijarro, Catherine Comte, Laetitia Muszkieta, Isabelle Mouyna, Bernard Henrissat, Vishukumar Aimanianda, Jean-Paul Latgé, Thierry Fontaine
Journal of Fungi 9:155 (2023)10.3390/jof9020155
Taxonomic composition and carbohydrate-active enzyme content in microbial enrichments from pulp mill anaerobic granules after cultivation on lignocellulosic substrates
Mabel T Wong, Camilla L Nesbø, Weijun Wang, Marie Couturier, Vincent Lombard, Pascal Lapebie, Nicolas Terrapon, Bernard Henrissat, Elizabeth A Edwards, Emma R Master
Frontiers in Microbiomes 2:1094865 (2023)10.3389/frmbi.2023.1094865
2022
Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides
Lucelia Cabral, Gabriela Persinoti, Douglas Paixão, Marcele Martins, Mariana Morais, Mariana Chinaglia, Mariane Domingues, Mauricio Sforca, Renan Pirolla, Wesley Generoso, Clelton Santos, Lucas Maciel, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Mario Murakami
Nature Communications 13:629 (2022)10.1038/s41467-022-28310-y
Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides
Lucelia Cabral, Gabriela Persinoti, Douglas Paixão, Marcele Martins, Mariana Morais, Mariana Chinaglia, Mariane Domingues, Mauricio Sforca, Renan Pirolla, Wesley Generoso, Clelton Santos, Lucas Maciel, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Mario Murakami
Nature Communications 13:629 (2022)10.1038/s41467-022-28310-y
Glycoside hydrolase subfamily GH5_57 features a highly redesigned catalytic interface to process complex hetero-β-mannans
Marcele Martins, Mariana Morais, Gabriela Persinoti, Rafael Galinari, Li Yu, Yoshihisa Yoshimi, Fernanda Passos Nunes, Tatiani Lima, Shayla Barbieri, Joana Silveira, Vincent Lombard, Nicolas Terrapon, Paul Dupree, Bernard Henrissat, Mário Murakami
Acta crystallographica Section D : Structural biology [1993-...] 78:1358-1372 (2022)10.1107/S2059798322009561
Glycoside hydrolase subfamily GH5_57 features a highly redesigned catalytic interface to process complex hetero-β-mannans
Marcele Martins, Mariana Morais, Gabriela Persinoti, Rafael Galinari, Li Yu, Yoshihisa Yoshimi, Fernanda Passos Nunes, Tatiani Lima, Shayla Barbieri, Joana Silveira, Vincent Lombard, Nicolas Terrapon, Paul Dupree, Bernard Henrissat, Mário Murakami
Acta crystallographica Section D : Structural biology [1993-...] 78:1358-1372 (2022)10.1107/S2059798322009561
Diversity of genomic adaptations to the post‐fire environment in Pezizales fungi points to crosstalk between charcoal tolerance and sexual development
Andrei Steindorff, Kyungyong Seong, Akiko Carver, Sara Calhoun, Monika Fischer, Kyra Stillman, Haowen Liu, Elodie Drula, Bernard Henrissat, Hunter Simpson, Jonathan Schilling, Anna Lipzen, Guifen He, Mi Yan, Bill Andreopoulos, Jasmyn Pangilinan, Kurt Labutti, Vivian Ng, Matthew Traxler, Thomas Bruns, Igor Grigoriev
New Phytologist 236:1154-1167 (2022)10.1111/nph.18407
Microbial liberation of N-methylserotonin from orange fiber in gnotobiotic mice and humans
Nathan Han, Jiye Cheng, Omar Delannoy-Bruno, Daniel Webber, Nicolas Terrapon, Bernard Henrissat, Dmitry Rodionov, Aleksandr Arzamasov, Andrei Osterman, David Hayashi, Alexandra Meynier, Sophie Vinoy, Chandani Desai, Stacey Marion, Michael Barratt, Andrew Heath, Jeffrey Gordon
Cell 185:3056-3057 (2022)10.1016/j.cell.2022.07.007
Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk‐cap ( Lactarius ) mushrooms
Annie Lebreton, Nianwu Tang, Alan Kuo, Kurt Labutti, William Andreopoulos, Elodie Drula, Shingo Miyauchi, Kerrie Barry, Alicia Clum, Anna Lipzen, Daniel Mousain, Vivian Ng, Ran Wang, Yucheng Dai, Bernard Henrissat, Igor Grigoriev, Alexis Guerin-Laguette, Fuqiang Yu, Francis Martin
New Phytologist 235:306-319 (2022)10.1111/nph.18143
The Land–Sea Connection: Insights Into the Plant Lineage from a Green Algal Perspective
Charles Bachy, Fabian Wittmers, Jan Muschiol, Maria Hamilton, Bernard Henrissat, Alexandra Worden
Annual Review of Plant Biology 73 (2022)10.1146/annurev-arplant-071921-100530
An approach for evaluating the effects of dietary fiber polysaccharides on the human gut microbiome and plasma proteome
Omar Delannoy-Bruno, Chandani Desai, Juan Castillo, Garret Couture, Ruteja Barve, Vincent Lombard, Bernard Henrissat, Jiye Cheng, Nathan Han, David Hayashi, Alexandra Meynier, Sophie Vinoy, Carlito Lebrilla, Stacey Marion, Andrew Heath, Michael Barratt, Jeffrey Gordon
Proceedings of the National Academy of Sciences of the United States of America 119:e2123411119 (2022)10.1073/pnas.2123411119
Genome evolution of a nonparasitic secondary heterotroph, the diatom Nitzschia putrida
Ryoma Kamikawa, Takako Mochizuki, Mika Sakamoto, Yasuhiro Tanizawa, Takuro Nakayama, Ryo Onuma, Ugo Cenci, Daniel Moog, Samuel Speak, Krisztina Sarkozi, Andrew Toseland, Cock van Oosterhout, Kaori Oyama, Misako Kato, Keitaro Kume, Motoki Kayama, Tomonori Azuma, Ken-Ichiro Ishii, Hideaki Miyashita, Bernard Henrissat, Vincent Lombard, Joe Win, Sophien Kamoun, Yuichiro Kashiyama, Shigeki Mayama, Shin-Ya Miyagishima, Goro Tanifuji, Thomas Mock, Yasukazu Nakamura
Science Advances 8:eabi5075 (2022)10.1126/sciadv.abi5075
Genome evolution of a nonparasitic secondary heterotroph, the diatom Nitzschia putrida
Ryoma Kamikawa, Takako Mochizuki, Mika Sakamoto, Yasuhiro Tanizawa, Takuro Nakayama, Ryo Onuma, Ugo Cenci, Daniel Moog, Samuel Speak, Krisztina Sarkozi, Andrew Toseland, Cock van Oosterhout, Kaori Oyama, Misako Kato, Keitaro Kume, Motoki Kayama, Tomonori Azuma, Ken-Ichiro Ishii, Hideaki Miyashita, Bernard Henrissat, Vincent Lombard, Joe Win, Sophien Kamoun, Yuichiro Kashiyama, Shigeki Mayama, Shin-Ya Miyagishima, Goro Tanifuji, Thomas Mock, Yasukazu Nakamura
Science Advances 8:eabi5075 (2022)10.1126/sciadv.abi5075
Functional exploration of the glycoside hydrolase family GH113
Marie Couturier, Mélanie Touvrey-Loiodice, Nicolas Terrapon, Elodie Drula, Laurine Buon, Christine Chirat, Bernard Henrissat, William Helbert
PLoS ONE 17:1-14 (2022)10.1371/journal.pone.0267509
Generation of a Library of Carbohydrate-Active Enzymes for Plant Biomass Deconstruction
Vânia Cardoso, Joana Brás, Inês Costa, Luís Ferreira, Luís Gama, Renaud Vincentelli, Bernard Henrissat, Carlos Fontes
International Journal of Molecular Sciences 23:4024 (2022)10.3390/ijms23074024
Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi
Brian Looney, Shingo Miyauchi, Emmanuelle Morin, Elodie Drula, Pierre Emmanuel Courty, Annegret Kohler, Alan Kuo, Kurt Labutti, Jasmyn Pangilinan, Anna Lipzen, Robert Riley, William Andreopoulos, Guifen He, Jenifer Johnson, Matt Nolan, Andrew Tritt, Kerrie Barry, Igor Grigoriev, László Nagy, David Hibbett, Bernard Henrissat, P. Brandon Matheny, Jesse Labbé, Francis Martin
New Phytologist 233:2294-2309 (2022)10.1111/nph.17892
Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species
Yi-Fei Sun, Annie Lebreton, Jia-Hui Xing, Yu-Xuan Fang, Jing Si, Emmanuelle Morin, Shingo Miyauchi, Elodie Drula, Steven Ahrendt, Kelly Cobaugh, Anna Lipzen, Maxim Koriabine, Robert Riley, Annegret Kohler, Kerrie Barry, Bernard Henrissat, Igor Grigoriev, Francis Martin, Bao-Kai Cui
Journal of Fungi 8:311 (2022)10.3390/jof8030311
Assembly and synthesis of the extracellular matrix in brown algae
Lisa Mazéas, Rina Yonamine, Tristan Barbeyron, Bernard Henrissat, Elodie Drula, Nicolas Terrapon, Chikako Nagasato, Cécile Hervé
Seminars in Cell and Developmental Biology 134:112-124 (2022)10.1016/j.semcdb.2022.03.005
The ectomycorrhizal basidiomycete Laccaria bicolor releases a GH28 polygalacturonase that plays a key role in symbiosis establishment
Feng Zhang, Aurore Labourel, Mireille Haon, Minna Kemppainen, Emilie da Silva Machado, Nicolas Brouilly, Claire Veneault-Fourrey, Annegret Kohler, Marie‐noëlle Rosso, Alejandro Pardo, Bernard Henrissat, Jean‐guy Berrin, Francis Martin
New Phytologist 233:2534-2547 (2022)10.1111/nph.17940
Phenotypic and Genomic Diversification in Complex Carbohydrate-Degrading Human Gut Bacteria
Nicholas Pudlo, Karthik Urs, Ryan Crawford, Ali Pirani, Todd Atherly, Roberto Jimenez, Nicolas Terrapon, Bernard Henrissat, Daniel Peterson, Cherie Ziemer, Evan Snitkin, Eric Martens
mSystems 7:e0094721 (2022)10.1128/msystems.00947-21
The carbohydrate-active enzyme database: functions and literature
Elodie Drula, Marie-Line Garron, Suzan Dogan, Vincent Lombard, Bernard Henrissat, Nicolas Terrapon
Nucleic Acids Research 50:D571-D577 (2022)10.1093/nar/gkab1045
The carbohydrate-active enzyme database: functions and literature
Elodie Drula, Marie-Line Garron, Suzan Dogan, Vincent Lombard, Bernard Henrissat, Nicolas Terrapon
Nucleic Acids Research 50:D571-D577 (2022)10.1093/nar/gkab1045
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae
Richard Dorrell, Alan Kuo, Zoltan Füssy, Elisabeth Richardson, Asaf Salamov, Nikola Zarevski, Nastasia Freyria, Federico Ibarbalz, Jerry Jenkins, Juan Jose Pierella Karlusich, Andrei Stecca Steindorff, Robyn Edgar, Lori Handley, Kathleen Lail, Anna Lipzen, Vincent Lombard, John Mcfarlane, Charlotte Nef, Anna M.G. Novák Vanclová, Yi Peng, Chris Plott, Marianne Potvin, Fabio Rocha Jimenez Vieira, Kerrie Barry, Joel Dacks, Colomban de Vargas, Bernard Henrissat, Eric Pelletier, Jeremy Schmutz, Patrick Wincker, Chris Bowler, Igor Grigoriev, Connie Lovejoy
Life Science Alliance 6:e202201833 (2022)10.26508/lsa.202201833
Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales
Gang Wu, Shingo Miyauchi, Emmanuelle Morin, Alan Kuo, Elodie Drula, Torda Varga, Annegret Kohler, Bang Feng, Yang Cao, Anna Lipzen, Christopher Daum, Hope Hundley, Jasmyn Pangilinan, Jenifer Johnson, Kerrie Barry, Kurt Labutti, Vivian Ng, Steven Ahrendt, Byoungnam Min, In‐geol Choi, Hongjae Park, Jonathan Plett, Jon Magnuson, Joseph Spatafora, László Nagy, Bernard Henrissat, Igor Grigoriev, Zhu‐liang Yang, Jianping Xu, Francis Martin
New Phytologist 10 (2022)10.1111/nph.17858
2021
Genetic determinants of endophytism in the Arabidopsis root mycobiome
Fantin Mesny, Shingo Miyauchi, Thorsten Thiergart, Brigitte Pickel, Lea Atanasova, Magnus Karlsson, Bruno Hüttel, Kerrie Barry, Sajeet Haridas, Cindy Chen, Diane Bauer, William Andreopoulos, Jasmyn Pangilinan, Kurt Labutti, Robert Riley, Anna Lipzen, Alicia Clum, Elodie Drula, Bernard Henrissat, Annegret Kohler, Igor Grigoriev, Francis Martin, Stéphane Hacquard
Nature Communications 12:7227 (2021)10.1038/s41467-021-27479-y
Clinical evidence of the role of Methanobrevibacter smithii in severe acute malnutrition
Aminata Camara, Salimata Konate, Maryam Tidjani Alou, Aly Kodio, Amadou Hamidou Togo, Sebastien Cortaredona, Bernard Henrissat, Mahamadou Ali Thera, Ogobara Doumbo, Didier Raoult, Matthieu Million
Scientific Reports 11 (2021)10.1038/s41598-021-84641-8
Discovery of fungal oligosaccharide-oxidising flavo-enzymes with previously unknown substrates, redox-activity profiles and interplay with LPMOs
Majid Haddad Momeni, Folmer Fredslund, Bastien Bissaro, Olanrewaju Raji, Thu Vuong, Sebastian Meier, Tine Sofie Nielsen, Vincent Lombard, Bruno Guigliarelli, Frédéric Biaso, Mireille Haon, Sacha Grisel, Bernard Henrissat, Ditte Hededam Welner, Emma Master, Jean-Guy Berrin, Maher Abou Hachem
Nature Communications 12 (2021)10.1038/s41467-021-22372-0
Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates
Jennifer Brown, Candice Swift, Stephen Mondo, Susanna Seppala, Asaf Salamov, Vasanth Singan, Bernard Henrissat, Elodie Drula, John Henske, Samantha Lee, Kurt Labutti, Guifen He, Mi Yan, Kerrie Barry, Igor Grigoriev, Michelle O'Malley
Biotechnology for Biofuels 14:234 (2021)10.1186/s13068-021-02083-w
Display of the human mucinome with defined O-glycans by gene engineered cells
Rebecca Nason, Christian Büll, Andriana Konstantinidi, Lingbo Sun, Zilu Ye, Adnan Halim, Wenjuan Du, Daniel Sørensen, Fabien Durbesson, Sanae Furukawa, Ulla Mandel, Hiren Joshi, Leo Alexander Dworkin, Lars Hansen, Leonor David, Tina Iverson, Barbara Bensing, Paul Sullam, Ajit Varki, Erik De Vries, Cornelis de Haan, Renaud Vincentelli, Bernard Henrissat, Sergey Vakhrushev, Henrik Clausen, Yoshiki Narimatsu
Nature Communications 12:4070 (2021)10.1038/s41467-021-24366-4
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes
Mario Franco, Jennifer Wisecaver, a Elizabeth Arnold, Yu-Ming Ju, Jason Slot, Steven Ahrendt, Lillian Moore, Katharine Eastman, Kelsey Scott, Zachary Konkel, Stephen Mondo, Alan Kuo, Richard Hayes, Sajeet Haridas, Bill Andreopoulos, Robert Riley, Kurt Labutti, Jasmyn Pangilinan, Anna Lipzen, Mojgan Amirebrahimi, Juying Yan, Catherine Adam, Keykhosrow Keymanesh, Vivian Ng, Katherine Louie, Trent Northen, Elodie Drula, Bernard Henrissat, Huei-Mei Hsieh, Ken Youens-Clark, François Lutzoni, Jolanta Miadlikowska, Daniel Eastwood, Richard Hamelin, Igor Grigoriev, Jana U'Ren, A. Elizabeth Arnold, Yu‐ming Ju, Huei‐mei Hsieh, Ken Youens‐clark, Jana U’ren
New Phytologist (2021)10.1111/nph.17873
Larvae of longhorned beetles (Coleoptera; Cerambycidae) have evolved a diverse and phylogenetically conserved array of plant cell wall degrading enzymes
Na Ra Shin, Seunggwan Shin, Yu Okamura, Roy Kirsch, Vincent Lombard, Petr Svacha, Olivier Denux, Sylvie Augustin, Bernard Henrissat, Duane Mckenna, Yannick Pauchet
Systematic Entomology 46:784-797 (2021)10.1111/syen.12488
Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus
Rachel Koch, Gyeong Mee Yoon, Uma Aryal, Kathleen Lail, Mojgan Amirebrahimi, Kurt Labutti, Anna Lipzen, Robert Riley, Kerrie Barry, Bernard Henrissat, Igor Grigoriev, Joshua Herr, M Catherine Aime, M. Catherine Aime
Current Biology - CB 31:3905-3914.e6 (2021)10.1016/j.cub.2021.06.033
Secreted pectin monooxygenases drive plant infection by pathogenic oomycetes
Bernard Henrissat, Federico Sabbadin, Saioa Urresti, Anna Avrova, Lydia Welsh, Peter Lindley, Michael Csukai, Julie Squires, Paul Walton, Gideon Davies, Neil Bruce, Stephen Whisson, Simon Mcqueen-Mason
Science 373:774-779 (2021)10.1126/science.abj1342
C -type cytochrome-initiated reduction of bacterial lytic polysaccharide monooxygenases
Jessie Branch, Badri Rajagopal, Alessandro Paradisi, Nick Yates, Peter Lindley, Jake Smith, Kristian Hollingsworth, W Bruce Turnbull, Bernard Henrissat, Alison Parkin, Alan Berry, Glyn Hemsworth, W. Bruce Turnbull
Biochemical Journal 478:2927-2944 (2021)10.1042/BCJ20210376
Gut microbiome contributions to altered metabolism in a pig model of undernutrition
Hao-Wei Chang, Nathan Mcnulty, Matthew Hibberd, David O'Donnell, Jiye Cheng, Vincent Lombard, Bernard Henrissat, Olga Ilkayeva, Michael Muehlbauer, Christopher Newgard, Michael Barratt, Xi Lin, Jack Odle, Jeffrey Gordon, David O’donnell
Proceedings of the National Academy of Sciences of the United States of America 118:e2024446118 (2021)10.1073/pnas.2024446118
Characterization of three bacterial glycoside hydrolase family 9 endoglucanases with different modular architectures isolated from a compost metagenome
Laure Aymé, Agnès Hébert, Bernard Henrissat, Vincent Lombard, Nathalie Franche, Stéphanie Perret, Etienne Jourdier, Senta Heiss-Blanquet
Biochimica et Biophysica Acta (BBA) - General Subjects 1865:129848 (2021)10.1016/j.bbagen.2021.129848
Genome Features of Asaia sp. W12 Isolated from the Mosquito Anopheles stephensi Reveal Symbiotic Traits
Shicheng Chen, Ting Yu, Nicolas Terrapon, Bernard Henrissat, Edward D Walker
Genes 12:752 (2021)10.3390/genes12050752
Strain-level functional variation in the human gut microbiota based on bacterial binding to artificial food particles
Michael Patnode, Janaki Guruge, Juan Castillo, Garret Couture, Vincent Lombard, Nicolas Terrapon, Bernard Henrissat, Carlito Lebrilla, Jeffrey Gordon
Cell Host & Microbe 29:664-673.e5 (2021)10.1016/j.chom.2021.01.007
Characterization of the β-glucuronidase Pn3Pase as the founding member of glycoside hydrolase family GH169
Paeton Wantuch, Satya Jella, Jeremy Duke, Jarrod Mousa, Bernard Henrissat, John Glushka, Fikri Avci
Glycobiology 31:266-274 (2021)10.1093/glycob/cwaa070
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay
Hayat Hage, Shingo Miyauchi, Máté Virágh, Elodie Drula, Byoungnam Min, Delphine Chaduli, David Navarro, Anne Favel, Manon Norest, Laurence Lesage‐meessen, Balázs Bálint, Zsolt Merényi, Laura Eugenio, Emmanuelle Morin, Angel T Martínez, Petr Baldrian, Martina Štursová, María Jesús Martínez, Cenek Novotny, Jon K Magnuson, Joey W Spatafora, Sundy Maurice, Jasmyn Pangilinan, Willian Andreopoulos, Kurt Labutti, Hope Hundley, Hyunsoo Na, Alan Kuo, Kerrie Barry, Anna Lipzen, Bernard Henrissat, Robert Riley, Steven Ahrendt, László G Nagy, Igor V Grigoriev, Francis Martin, Marie‐noëlle Rosso
Environmental Microbiology (2021)10.1111/1462-2920.15423
Niche differentiation and evolution of the wood decay machinery in the invasive fungus Serpula lacrymans
Jaqueline Hess, Sudhagar Balasundaram, Renee Bakkemo, Elodie Drula, Bernard Henrissat, Nils Högberg, Daniel Eastwood, Inger Skrede
The International Society of Microbiologial Ecology Journal 15:592-604 (2021)10.1038/s41396-020-00799-5
Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
Live Hagen, Charles Brooke, Claire Shaw, Angela Norbeck, Hailan Piao, Magnus Ø. Arntzen, Heather E. Olson, Alex Copeland, Nancy Isern, Anil Shukla, Simon Roux, Vincent Lombard, Bernard Henrissat, Michelle O’malley, Igor Grigoriev, Susannah Tringe, Roderick Mackie, Ljiljana Pasa-Tolic, Phillip Pope, Matthias Hess
The International Society of Microbiologial Ecology Journal 15:421-434 (2021)10.1038/s41396-020-00769-x
Multimodularity of a GH10 Xylanase Found in the Termite Gut Metagenome
Haiyang Wu, Eleni Ioannou, Bernard Henrissat, Cédric Montanier, Sophie Bozonnet, Michael O'Donohue, Claire Dumon
Applied and Environmental Microbiology 87 (2021)10.1128/AEM.01714-20
Functional diversity of three tandem C-terminal carbohydrate-binding modules of a β-mannanase
Marie Sofie Møller, Souad El Bouaballati, Bernard Henrissat, Birte Svensson
Journal of Biological Chemistry 296:100638 (2021)10.1016/j.jbc.2021.100638
Evaluating microbiome-directed fibre snacks in gnotobiotic mice and humans
Omar Delannoy-Bruno, Chandani Desai, Arjun Raman, Robert Chen, Matthew Hibberd, Jiye Cheng, Nathan Han, Juan Castillo, Garret Couture, Carlito Lebrilla, Ruteja Barve, Vincent Lombard, Bernard Henrissat, Semen Leyn, Dmitry Rodionov, Andrei Osterman, David Hayashi, Alexandra Meynier, Sophie Vinoy, Kyleigh Kirbach, Tara Wilmot, Andrew Heath, Samuel Klein, Michael Barratt, Jeffrey Gordon
Nature 595:91-95 (2021)10.1038/s41586-021-03671-4
Identification of the molecular determinants driving the substrate specificity of fungal lytic polysaccharide monooxygenases (LPMOs)
Kristian Frandsen, Mireille Haon, Sacha Grisel, Bernard Henrissat, Leila Lo Leggio, Jean-Guy Berrin
Journal of Biological Chemistry 296:100086 (2021)10.1074/jbc.RA120.015545
Identification of Copper-Containing Oxidoreductases in the Secretomes of Three Colletotrichum Species with a Focus on Copper Radical Oxidases for the Biocatalytic Production of Fatty Aldehydes
David Ribeaucourt, Safwan Saker, David Navarro, Bastien Bissaro, Elodie Drula, Lydie Oliveira Correia, Mireille Haon, Sacha Grisel, Nicolas Lapalu, Bernard Henrissat, Richard O'Connell, Fanny Lambert, Mickaël Lafond, Jean-Guy Berrin
Applied and Environmental Microbiology 87:e01526-21 (2021)10.1128/AEM.01526-21
2020
Galactosaminogalactan activates the inflammasome to provide host protection
Benoit Briard, Thierry Fontaine, Parimal Samir, David Place, Laetitia Muszkieta, R. Malireddi, Rajendra Karki, Shelbi Christgen, Perrine Bomme, Peter Vogel, Rémi Beau, Emilia Mellado, Oumaima Ibrahim-Granet, Bernard Henrissat, Ravi Kalathur, Cam Robinson, Jean-Paul Latgé, Thirumala-Devi Kanneganti
Nature 588:688-692 (2020)10.1038/s41586-020-2996-z
A comparative genomics study of 23 Aspergillus species from section Flavi
Inge Kjærbølling, Tammi Vesth, Jens Frisvad, Jane Nybo, Sebastian Theobald, Sara Kildgaard, Thomas Isbrandt Petersen, Alan Kuo, Atsushi Sato, Ellen Lyhne, Martin Kogle, Ad Wiebenga, Roland Kun, Ronnie Lubbers, Miia Mäkelä, Kerrie Barry, Mansi Chovatia, Alicia Clum, Chris Daum, Sajeet Haridas, Guifen He, Kurt Labutti, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Robert Riley, Asaf Salamov, Blake Simmons, Jon Magnuson, Bernard Henrissat, Uffe Mortensen, Thomas Larsen, Ronald de Vries, Igor Grigoriev, Masayuki Machida, Scott Baker, Mikael Andersen
Nature Communications 11 (2020)10.1038/s41467-019-14051-y
Metabolism of multiple glycosaminoglycans by Bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus
Didier Ndeh, Arnaud Baslé, Henrik Strahl, Urszula Mcclurgg, Bernard Henrissat, Nicolas Terrapon, Alan Cartmell
Nature Communications 11 (2020)10.1038/s41467-020-14509-4
Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut
Leszek Michalak, John Christian Gaby, Leidy Lagos, Sabina Leanti La Rosa, Torgeir Hvidsten, Catherine Tétard-Jones, William G T Willats, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Johannes Dröge, Magnus Øverlie Arntzen, Live Heldal Hagen, Margareth Øverland, Phillip Pope, Bjørge Westereng
Nature Communications 11 (2020)10.1038/s41467-020-19585-0
Display of the Human Mucinome With Defined O-Glycans by Gene Engineered Cells
Nason Rebecca, Bull, Christian, Hiren J Joshi, Konstantinidi, Andriana, Renaud Vincentelli, Bernard Henrissat, Vakhrushev, Sergey, Henrik Clausen, Yoshiki Narimatsu
Glycobiology (2020)
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
Shingo Miyauchi, Enikő Kiss, Alan Kuo, Elodie Drula, Annegret Kohler, Marisol Sánchez-García, Emmanuelle Morin, Bill Andreopoulos, Kerrie Barry, Gregory Bonito, Marc Buée, Akiko Carver, Cindy Chen, Nicolas Cichocki, Alicia Clum, David Culley, Pedro Crous, Laure Fauchery, Mariangela Girlanda, Richard Hayes, Zsófia Kéri, Kurt Labutti, Anna Lipzen, Vincent Lombard, Jon Magnuson, François Maillard, Claude C. Murat, Matt Nolan, Robin Ohm, Jasmyn Pangilinan, Maíra de Freitas Pereira, Silvia Perotto, Martina Peter, Stephanie Pfister, Robert Riley, Yaron Sitrit, J. Benjamin Stielow, Gergely Szöllősi, Lucia Žifčáková, Martina Štursová, Joseph Spatafora, Leho Tedersoo, Lu-Min Vaario, Akiyoshi Yamada, Mi Yan, Pengfei Wang, Jianping Xu, Tom Bruns, Petr Baldrian, Rytas Vilgalys, Christophe Dunand, Bernard Henrissat, Igor Grigoriev, David Hibbett, László Nagy, Francis M. Martin
Nature Communications 11 (2020)10.1038/s41467-020-18795-w
Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions
Abbot Oghenekaro, Andriy Kovalchuk, Tommaso Raffaello, Susana Camarero, Markus Gressler, Bernard Henrissat, Juna Lee, Mengxia Liu, Angel Martínez, Otto Miettinen, Sirma Mihaltcheva, Jasmyn Pangilinan, Fei Ren, Robert Riley, Francisco Javier Ruiz-Dueñas, Ana Serrano, Michael Thon, Zilan Wen, Zhen Zeng, Kerrie Barry, Igor Grigoriev, Francis Martin, Fred Asiegbu
Scientific Reports 10 (2020)10.1038/s41598-020-62150-4
Characterization of the CAZy Repertoire from the Marine-Derived Fungus Stemphylium lucomagnoense in Relation to Saline Conditions
Wissal Ben Ali, David Navarro, Abhishek Kumar, Elodie Drula, Annick Turbé-Doan, Lydie Oliveira Correia, Stéphanie Baumberger, Emmanuel Bertrand, Craig Faulds, Bernard Henrissat, Giuliano Sciara, Tahar Mechichi, Eric Record
Marine drugs 18:1-21 (2020)10.3390/md18090461
Utilization of Galectins by Pathogens for Infection
Diyoly Ayona, Pierre-Edouard Fournier, Bernard Henrissat, Benoit Desnues
Frontiers in Immunology 11 (2020)10.3389/fimmu.2020.01877
A mutation map for human glycoside hydrolase genes
Lars Hansen, Diab Husein, Birthe Gericke, Torben Hansen, Oluf Pedersen, Mitali Tambe, Hudson Freeze, Hassan Naim, Bernard Henrissat, Hans Wandall, Henrik Clausen, Eric Bennett
Glycobiology 30:500-515 (2020)10.1093/glycob/cwaa010
Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus
Shingo Miyauchi, Hayat Hage, Elodie Drula, Laurence Lesage-Meessen, Jean-Guy Berrin, David Navarro, Anne Favel, Delphine Chaduli, Sacha Grisel, Mireille Haon, François Piumi, Anthony Levasseur, Anne Lomascolo, Steven Ahrendt, Kerrie Barry, Kurt Labutti, Didier Chevret, Chris Daum, Jérôme J. Mariette, Christophe Klopp, Daniel Cullen, Ronald de Vries, Allen Gathman, Matthieu Hainaut, Bernard Henrissat, Kristiina Hildén, Ursula Kues, Walt Lilly, Anna Lipzen, Miia Mäkelä, Angel Martinez, Melanie Morel-Rouhier, Emmanuelle Morin, Jasmyn Pangilinan, Arthur Ram, Han Wösten, Francisco Ruiz-Dueñas, Robert Riley, Eric Record, Igor Grigoriev, Marie-Noelle Rosso
DNA Research (2020)10.1093/dnares/dsaa011
101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens
S. Haridas, R. Albert, M. Binder, J. Bloem, K. Labutti, A. Salamov, B. Andreopoulos, S.E. Baker, K. Barry, G. Bills, B.H. Bluhm, C. Cannon, R. Castanera, D.E. Culley, C. Daum, D. Ezra, J.B. González, Bernard Henrissat, A. Kuo, C. Liang, A. Lipzen, F. Lutzoni, J. Magnuson, S.J. Mondo, M. Nolan, R.A. Ohm, J. Pangilinan, H.-J. Park, L. Ramírez, M. Alfaro, H. Sun, A. Tritt, Y. Yoshinaga, L.-H. Zwiers, B.G. Turgeon, S.B. Goodwin, J.W. Spatafora, P.W. Crous, I.V. Grigoriev
Studies in Mycology 96:141-153 (2020)10.1016/j.simyco.2020.01.003
Infection cushions of Fusarium graminearum are fungal arsenals for wheat infection
Michael Mentges, Anika Glasenapp, Marike Boenisch, Sascha Malz, Bernard Henrissat, Rasmus J.N. Frandsen, Ulrich Guldener, Martin Münsterkötter, Jörg Bormann, Marc‐henri Lebrun, Wilhelm Schäfer, Ana Lilia Martinez‐rocha
Molecular Plant Pathology 21:1070-1087 (2020)10.1111/mpp.12960
Discovery of a Fungal Copper Radical Oxidase with High Catalytic Efficiency toward 5-Hydroxymethylfurfural and Benzyl Alcohols for Bioprocessing
Yann Mathieu, Wendy Offen, Stephanie Forget, Luisa Ciano, Alexander Holm Viborg, Elena Blagova, Bernard Henrissat, Paul Walton, Gideon Davies, Harry Brumer
ACS Catalysis 10:3042-3058 (2020)10.1021/acscatal.9b04727
Discovery of hyperstable carbohydrate‐active enzymes through metagenomics of extreme environments
Andrea Strazzulli, Beatrice Cobucci‐ponzano, Roberta Iacono, Rosa Giglio, Luisa Maurelli, Nicola Curci, Corinna Schiano‐di‐cola, Annalisa Santangelo, Patrizia Contursi, Vincent Lombard, Bernard Henrissat, Federico M Lauro, Carlos M.G.A. Fontes, Marco Moracci
FEBS Journal 287:1116-1137 (2020)10.1111/febs.15080
At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions
Francesco Venice, Stefano Ghignone, Alessandra Salvioli Di Fossalunga, Joelle Amselem, Mara Novero, Xie Xianan, Kinga Sędzielewska Toro, Emmanuelle Morin, Anna Lipzen, Igor V. Grigoriev, Bernard Henrissat, Francis M. Martin, Paola Bonfante
Environmental Microbiology 22:122-141 (2020)10.1111/1462-2920.14827
A fungal family of lytic polysaccharide monooxygenase-like copper proteins
Aurore Labourel, Kristian Frandsen, Feng Zhang, Nicolas Brouilly, Sacha Grisel, Mireille Haon, Luisa Ciano, David Ropartz, Mathieu Fanuel, Francis Martin, David Navarro, Marie-Noelle Rosso, Tobias Tandrup, Bastien Bissaro, Katja S. Johansen, Anastasia Zerva, Paul H. Walton, Bernard Henrissat, Leila Lo Leggio, Jean-Guy Berrin
Nature Chemical Biology 16:345-350 (2020)10.1038/s41589-019-0438-8
Analysis of the diversity of the glycoside hydrolase family 130 in mammal gut microbiomes reveals a novel mannoside-phosphorylase function
Ao Li, Elisabeth Laville, Laurence Tarquis, Vincent Lombard, David Ropartz, Nicolas Terrapon, Bernard Henrissat, David Guieysse, Jeremy Esque, Julien Durand, Diego Morgavi, Gabrielle Potocki-Veronese
Microbial Genomics 6:1-14 (2020)10.1099/mgen.0.000404
A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment
Junhua Li, Huanzi Zhong, Yuliaxis Y. Ramayo-Caldas, Nicolas Terrapon, Vincent Lombard, Gabrielle Potocki-Veronese, Jordi Estellé, Milka Popova, Ziyi Yang, Hui Zhang, Fang Li, Shanmei Tang, Fangming Yang, Weineng Chen, Bing Chen, Jiyang Li, Jing Guo, Cécile Martin, Emmanuelle Maguin, Xun Xu, Huanming Yang, Jian Wang, Lise Madsen, Karsten Kristiansen, Bernard Henrissat, Stanislav S. Ehrlich, Diego Morgavi
GigaScience 9:1-15 (2020)10.1093/gigascience/giaa057
Investigating host-microbiome interactions by droplet based microfluidics
Alexandra S Tauzin, Mariana Rangel Pereira, Liisa D van Vliet, Pierre-Yves Colin, Elisabeth Laville, Jeremy Esque, Sandrine Laguerre, Bernard Henrissat, Nicolas Terrapon, Vincent Lombard, Marion Leclerc, Joël Doré, Florian Hollfelder, Gabrielle Potocki-Veronese
Microbiome 8 (2020)10.1186/s40168-020-00911-z
Genomic analysis enlightens agaricales Lifestyle Evolution and increasing peroxidase diversity
Francisco Ruiz-Dueñas, José Barrasa, Marisol Sánchez-García, Susana Camarero, Shingo Miyauchi, Ana Serrano, Dolores Linde, Rashid Babiker, Elodie Drula, Iván Ayuso-Fernández, Remedios Pacheco, Guillermo Padilla, Patricia Ferreira, Jorge Barriuso, Harald Kellner, Raúl Castanera, Manuel Alfaro, Lucía Ramirez, Antonio Pisabarro, Robert Riley, Alan Kuo, William Andreopoulos, Kurt Labutti, Jasmyn Pangilinan, Andrew Tritt, Anna Lipzen, Guifen He, Mi Yan, Vivian Ng, Igor Grigoriev, Daniel Cullen, Marie-Noëlle Rosso, Bernard Henrissat, David Hibbett, Angel Martínez
Molecular Biology and Evolution 38:p. 1428-1446 (2020)10.1093/molbev/msaa301
Fungal ecological strategies reflected in gene transcription ‐ a case study of two litter decomposers
Florian Barbi, Annegret Kohler, Kerrie Barry, Preetisri Baskaran, Chris Daum, Laure Fauchery, Katarina Ihrmark, Alan Kuo, Kurt Labutti, Anna Lipzen, Emmanuelle Morin, Igor Grigoriev, Bernard Henrissat, Björn Lindahl, Francis Martin
Environmental Microbiology 22:1089-1103 (2020)10.1111/1462-2920.14873
2019
Trichoderma reesei Dehydrogenase, a Pyrroloquinoline Quinone-Dependent Member of Auxiliary Activity Family 12 of the Carbohydrate-Active Enzymes Database: Functional and Structural Characterization
Annick Turbé-Doan, Eric Record, Vincent Lombard, Rajender Kumar, Anthony Levasseur, Bernard Henrissat, Marie-Line Garron
Applied and Environmental Microbiology 85:15 p. (2019)10.1128/AEM.00964-19
A metagenomics investigation of carbohydrate-active enzymes along the goat and camel intestinal tract
Saad Al-Masaudi, Abdessamad El Kaoutari, Elodie Drula, Elrashdy Redwan, Vincent Lombard, Bernard Henrissat
International Microbiology 22:429-435 (2019)10.1007/s10123-019-00068-2
Mycobacterium ulcerans mycolactones-fungi crosstalking
Nassim Hammoudi, Carole Cassagne, Nicholas Armstrong, Stéphane Ranque, Bernard Henrissat, Michel Drancourt, Amar Bouam
Scientific Reports 9 (2019)10.1038/s41598-019-39927-3
The continuing expansion of CAZymes and their families
Marie-Line Garron, Bernard Henrissat
Current Opinion in Chemical Biology 53:82-87 (2019)10.1016/j.cbpa.2019.08.004
Inverting family GH156 sialidases define an unusual catalytic motif for glycosidase action
Pedro Bule, Léa Chuzel, Elena Blagova, Liang Wu, Melissa A Gray, Bernard Henrissat, Erdmann Rapp, Carolyn Bertozzi, Christopher Taron, Gideon Davies
Nature Communications 10 (2019)10.1038/s41467-019-12684-7
Comparative genomic analyses reveal diverse virulence factors and antimicrobial resistance mechanisms in clinical Elizabethkingia meningoseptica strains
Jochen Blom, Nicolas Terrapon, Shicheng Chen, Marty Soehnlen, Jochen Blom Id, Bernard Henrissat, Edward D Walker
PLoS ONE 14:e0222648 (2019)10.1371/journal.pone.0222648
Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613
Hongjae Park, Byoungnam Min, Yeongseon Jang, Jungyeon Kim, Anna Lipzen, Aditi Sharma, Bill Andreopoulos, Jenifer Johnson, Robert Riley, Joseph Spatafora, Bernard Henrissat, Kyoung Heon Kim, Igor Grigoriev, Jae-Jin Kim, In-Geol Choi
Applied Microbiology and Biotechnology 103:8145-8155 (2019)10.1007/s00253-019-10089-6
Updates to the Symbol Nomenclature for Glycans guidelines
Sriram Neelamegham, Kiyoko Aoki-Kinoshita, Evan Bolton, Martin Frank, Frederique Lisacek, Thomas Lütteke, Noel O'Boyle, Nicolle Packer, Pamela Stanley, Philip Toukach, Ajit Varki, Robert Woods, Noel O’boyle, Alan Darvill, Anne Dell, Bernard Henrissat, Carolyn Bertozzi, Gerald Hart, Hisashi Narimatsu, Hudson Freeze, Issaku Yamada, James Paulson, James Prestegard, Jamey Marth, J Vliegenthart, Marilynn Etzler, Markus Aebi, Minoru Kanehisa, Naoyuki Taniguchi, Nathan Edwards, Pauline Rudd, Peter Seeberger, Raja Mazumder, Rene Ranzinger, Richard Cummings, Ronald Schnaar, Serge Perez, Stuart Kornfeld, Taroh Kinoshita, William York, Yuriy Knirel
Glycobiology 29:620-624 (2019)10.1093/glycob/cwz045
Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data
Vikash Kumar, Matthieu Hainaut, Nicolas Delhomme, Chanaka Mannapperuma, Peter Immerzeel, Nathaniel R Street, Bernard Henrissat, Ewa J Mellerowicz
ACS Infectious Diseases 5:1609-1623 (2019)10.1021/acsinfecdis.9b00179
The Cellulosome Paradigm in An Extreme Alkaline Environment
Paripok Phitsuwan, Sarah Moraïs, Bareket Dassa, Bernard Henrissat, Edward A Bayer
Microorganisms 7:347 (2019)10.3390/microorganisms7090347
Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74
Grégory Arnal, Peter J Stogios, Jathavan Asohan, Mohamed Attia, Tatiana Skarina, Alexander Holm Viborg, Bernard Henrissat, Alexei Savchenko, Harry Brumer
Journal of Biological Chemistry 294:13233-13247 (2019)10.1074/jbc.RA119.009861
Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans
Michael Patnode, Zachary Beller, Nathan Han, Jiye Cheng, Samantha Peters, Nicolas Terrapon, Bernard Henrissat, Sophie Le Gall, Luc Saulnier, David Hayashi, Alexandra Meynier, Sophie Vinoy, Richard J Giannone, Robert L Hettich, Jeffrey I Gordon
Cell 179:59-73.e13 (2019)10.1016/j.cell.2019.08.011
Intrinsic dynamic behavior of enzyme:substrate complexes govern the catalytic action of β-galactosidases across clan GH-A
Rajender Kumar, Bernard Henrissat, Pedro Coutinho
Scientific Reports 9:10346 (2019)10.1038/s41598-019-46589-8
Effects of microbiota-directed foods in gnotobiotic animals and undernourished children
Jeanette L Gehrig, Siddarth Venkatesh, Hao-Wei Chang, Matthew C Hibberd, Vanderlene L Kung, Jiye Cheng, Robert y Chen, Sathish Subramanian, Carrie A Cowardin, Martin F Meier, David O'Donnell, Michael Talcott, Larry D Spears, Clay F Semenkovich, Bernard Henrissat, Richard J Giannone, Robert L Hettich, Olga Ilkayeva, Michael Muehlbauer, Christopher B Newgard, Christopher Sawyer, Richard D Head, Dmitry Rodionov, Aleksandr A Arzamasov, Semen A Leyn, Andrei L Osterman, Iqbal Hossain, Munirul Islam, Nuzhat Choudhury, Shafiqul Alam Sarker, Sayeeda Huq, Imteaz Mahmud, Ishita Mostafa, Mustafa Mahfuz, Michael J Barratt, Tahmeed Ahmed, Jeffrey I Gordon
Science 365 (2019)10.1126/science.aau4732
Comparative genomics reveals unique wood‐decay strategies and fruiting body development in the Schizophyllaceae
Neha Sahu, Krisztina Krizsán, Balázs Bálint, Gabor G Kovacs, Brigitta Kiss, Judit Cseklye, Elodie Drula, Bernard Henrissat, István Nagy, Mansi Chovatia, Catherine Adam, Kurt Labutti, Anna Lipzen, Robert Riley, Igor Grigoriev, Laszlo Nagy
New Phytologist 224:902-915 (2019)10.1111/nph.16032
Genomic insights from Monoglobus pectinilyticus: a pectin-degrading specialist bacterium in the human colon
Caroline Kim, Genelle Healey, William Kelly, Mark Patchett, Zoe Jordens, Gerald Tannock, Ian Sims, Tracey Bell, Duncan Hedderley, Bernard Henrissat, Douglas Rosendale
The International Society of Microbiologial Ecology Journal 13:1437-1456 (2019)10.1038/s41396-019-0363-6
Bacteroidetes use thousands of enzyme combinations to break down glycans
Pascal Lapébie, Vincent Lombard, Elodie Drula, Nicolas Terrapon, Bernard Henrissat
Nature Communications 10:1 (2019)10.1038/s41467-019-10068-5
Unraveling the subtleties of β-(1→3)-glucan phosphorylase specificity in the GH94, GH149, and GH161 glycoside hydrolase families
Sakonwan Kuhaudomlarp, Giulia Pergolizzi, Nicola Patron, Bernard Henrissat, Robert W. Field
Journal of Biological Chemistry 294:6483-6493 (2019)10.1074/jbc.RA119.007712
Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space
William Helbert, Laurent Poulet, Sophie Drouillard, Sophie Mathieu, Mélanie Loiodice, Marie Couturier, Vincent Lombard, Nicolas Terrapon, Jeremy Turchetto, Vincent Vincentelli, Bernard Henrissat
Proceedings of the National Academy of Sciences of the United States of America 116:6063-6068 (2019)10.1073/pnas.1815791116
Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi
Krisztina Krizsán, Éva Almási, Zsolt Merényi, Neha Sahu, Máté Virágh, Tamás Kószó, Stephen Mondo, Brigitta Kiss, Balázs Bálint, Ursula Kües, Kerrie Barry, Judit Cseklye, Botond Hegedüs, Bernard Henrissat, Jenifer Johnson, Anna Lipzen, Robin A Ohm, István Nagy, Jasmyn Pangilinan, Juying Yan, Yi Xiong, Igor V Grigoriev, David S Hibbett, László G Nagy
Proceedings of the National Academy of Sciences of the United States of America 116:7409-7418 (2019)10.1073/pnas.1817822116
AA16, a new Lytic Polysaccharide Monooxygenase family identified in fungal secretomes
Camille Filiatrault-Chastel, David Navarro, Mireille Haon, Sacha Grisel, Isabelle Gimbert Herpoël-Gimbert, Didier Chevret, Mathieu Fanuel, Bernard Henrissat, Senta Heiss-Blanquet, Antoine Margeot, Jean-Guy Berrin
Biotechnology for Biofuels 12 (2019)10.1186/s13068-019-1394-y
Investigating Host Microbiota Relationships Through Functional Metagenomics
Elisabeth Laville, Josette Perrier, Nada Bejar, Marc Maresca, Jeremy Esque, Alexandra Tauzin, Emma Bouhajja, Marion Leclerc, Elodie Drula, Bernard Henrissat, Stephane Berdah, Eric Di Pasquale, Patrick Robe, Gabrielle Potocki-Veronese
Frontiers in Microbiology 10:12 p. (2019)10.3389/fmicb.2019.01286
Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina
Emmanuelle Morin, Shingo Miyauchi, Hélène San Clemente, Eric C. H. Chen, Adrian Pelin, Ivan de La Providencia, Steve Ndikumana, Denis Beaudet, Matthieu Hainaut, Elodie Drula, Alan Kuo, Nianwu Tang, Sébastien Roy, Julie Viala, Bernard Henrissat, Igor V Grigoriev, Nicolas Corradi, Christophe Roux, Francis M. Martin
New Phytologist 222:1584-1598 (2019)10.1111/nph.15687
Evolution and comparative genomics of the most common Trichoderma species
Christian P. Kubicek, Andrei S. Steindorff, Komal Chenthamara, Gelsomina Manganiello, Bernard Henrissat, Jian Zhang, Feng Cai, Alexey G. Kopchinskiy, Eva M. Kubicek, Alan Kuo, Riccardo Baroncelli, Sabrina Sarrocco, Eliane Ferreira Noronha, Giovanni Vannacci, Qirong Shen, Igor V. Grigoriev, Irina S. Druzhinina
BMC Genomics 20 (2019)10.1186/s12864-019-5680-7
Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data
Vikash Kumar, Matthieu Hainaut, Nicolas Delhomme, Chanaka Mannapperuma, Peter Immerzeel, Nathaniel R. Street, Bernard Henrissat, Ewa J. Mellerowicz
The Plant Journal (2019)10.1111/tpj.14417
Multi-omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring
Hao Tan, Annegret Kohler, Renyun Miao, Tianhai Liu, Qiang Zhang, Bo Zhang, Lin Jiang, Yong Wang, Liyuan Xie, Jie Tang, Xiaolin Li, Lixu Liu, Igor V Grigoriev, Chris Daum, Kurt Labutti, Anna Lipzen, Alan Kuo, Emmanuelle Morin, Elodie Drula, Bernard Henrissat, Bo Wang, Zhongqian Huang, Bingcheng Gan, Weihong Peng, Francis Martin
Environmental Microbiology 21:3909-3926 (2019)10.1111/1462-2920.14741
A subfamily roadmap for functional glycogenomics of the evolutionarily diverse Glycoside Hydrolase Family 16 (GH16)
Alexander Holm Viborg, Nicolas Terrapon, Vincent Lombard, Gurvan Michel, Mirjam Czjzek, Bernard Henrissat, Harry Brumer
Journal of Biological Chemistry 294:15973-15986 (2019)10.1074/jbc.RA119.010619
Insights into an unusual auxiliary activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases
Kristian Frandsen, Morten Tovborg, Christian Jørgensen, Nikolaj Spodsberg, Marie-Noelle Rosso, Glyn R. Hemsworth, Elspeth F. Garman, Geoffrey W. Grime, Jens-Christian N. Poulsen, Tanveer S. Batth, Shingo Miyauchi, Anna Lipzen, Chris Daum, Igor V. Grigoriev, Katja S Johansen, Bernard Henrissat, Jean-Guy Berrin, Leila Lo Leggio
Journal of Biological Chemistry 294:17117-17130 (2019)10.1074/jbc.RA119.009223
Broad‐specificity GH131 β‐glucanases are a hallmark of Fungi and Oomycetes that colonise plants
Georgios Anasontzis, Marc-Henri Lebrun, Mireille Haon, Charlotte Champion, Annegret Kohler, Nicolas Lenfant, Francis Martin, Richard O'Connell, Robert Riley, Igor V. Grigoriev, Bernard Henrissat, Jean-Guy Berrin, Marie-Noelle Rosso
Environmental Microbiology np (2019)10.1111/1462-2920.14596
Sucrose 6F-phosphate phosphorylase: a novel insight in the human gut microbiome
Alexandra Tauzin, Laetitia Bruel, Elisabeth Laville, Cendrine Nicoletti, David Navarro, Bernard Henrissat, Josette Perrier, Gabrielle Potocki-Veronese, Thierry Giardina, Mickael Lafond
Microbial Genomics np (2019)10.1099/mgen.0.000253
From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus
Benoit J Kunath, Francesco Delogu, Adrian E Naas, Magnus Ø. Arntzen, Vincent Eijsink, Bernard Henrissat, Torgeir Hvidsten, Philippe B. Pope
The International Society of Microbiologial Ecology Journal 13:603-617 (2019)10.1038/s41396-018-0290-y
2018
Proteomic Dissection of the Cellulolytic Machineries Used by Soil-Dwelling Bacteroidetes
Marcel Taillefer, Magnus Arntzen, Bernard Henrissat, Phillip Pope, Johan Larsbrink
mSystems 3 (2018)10.1128/mSystems.00240-18
Analysis of carbohydrate-active enzymes in Thermogemmatispora sp. strain T81 reveals carbohydrate degradation ability
Atilio Tomazini, Sadhana Lal, Riffat Munir, Matthew Stott, Bernard Henrissat, Igor Polikarpov, Richard Sparling, David Levin
Canadian Journal of Microbiology 64:992-1003 (2018)10.1139/cjm-2018-0336
Leveraging single-cell genomics to expand the fungal tree of life
Steven Ahrendt, C Alisha Quandt, Doina Ciobanu, Alicia Clum, Asaf Salamov, Bill Andreopoulos, Jan-Fang Cheng, Tanja Woyke, Adrian Pelin, Bernard Henrissat, Nicole Reynolds, Gerald Benny, Matthew Smith, Timothy James, Igor Grigoriev
Nature Microbiology 3:1417-1428 (2018)10.1038/s41564-018-0261-0
A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)
Sean Ma, Yolanda Chen, Martin Ma, Joshua Benoit, Anita Bhandari, Julia Bowsher, Kristian Brevik, Kaat Cappelle, Mei-Ju Li, Anna Childers, Christopher Li, Olivier Christiaens, Justin Ma, Elise Didion, Elena Elpidina, Patamarerk Engsontia, Markus Ma, Inmaculada García-Robles, Richard Gibbs, Chandan Goswami, Alessandro Grapputo, Kristina Gruden, Marcin Ma, Bernard Ma, Emily Jennings, Jeffery Jones, Megha Kalsi, Sher Afzal Khan, Abhishek Kumar, Fei Li, Vincent Ma, Xingzhou Ma, Alex Martynov, Nicholas Miller, Robert Mitchell, Monica Muñoz-Torres, Anna Muszewska, Brenda Oppert, Subba Reddy Palli, Kristen Panfilio, Yannick Pauchet, Lindsey Perkin, Marko Petek, Monica Poelchau, Eric Record, Joseph Rinehart, Hugh Robertson, Andrew Rosendale, Victor Ruiz-Arroyo, Guy Smagghe, Zsofia Szendrei, Gregg W.C Thomas, Alex Torson, Iris Vargas Jentzsch, Matthew Weirauch, Ashley Yates, George Yocum, June-Sun Yoon, Stephen Richards, Sean Schoville, Martin Andersson, Mei-Ju Chen, Christopher Childers, Justin Clements, Markus Friedrich, Marcin Grynberg, Bernard Henrissat, Vincent Lombard, Alexander Ma, Lindsey Li, Marko Ma, Robert Robertson, Gregg W.C. Thomas, Matthew Ma, Richard Richards
Scientific Reports 8:1931 (2018)10.1038/s41598-018-20154-1
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
Yoann Seeleuthner, Samuel Mondy, Vincent Lombard, Quentin Carradec, Eric Pelletier, Marc Wessner, Jade Leconte, Jean-François Mangot, Julie Poulain, Karine Labadie, Ramiro Logares, Shinichi Sunagawa, Véronique de Berardinis, Marcel Salanoubat, Céline Dimier, Stefanie Kandels-Lewis, Marc Picheral, Sarah Searson, Stéphane Pesant, Nicole Poulton, Ramunas Stepanauskas, Peer Bork, Chris Bowler, Pascal Hingamp, Matthew B. Sullivan, Daniele Iudicone, Ramon Massana, Jean-Marc Aury, Bernard Henrissat, Eric Karsenti, Olivier Jaillon, Mike Sieracki, Colomban de Vargas, Patrick Wincker, Silvia G. Acinas, Emmanuel Boss, Michael Follows, Gabriel Gorsky, Nigel Grimsley, Lee Karp-Boss, Uros Krzic, Fabrice Not, Jeroen Raes, Emmanuel G. Reynaud, Christian Sardet, Sabrina Speich, Lars Stemmann, Jean Weissenbach, Didier Velayoudon
Nature Communications 9:310 (2018)10.1038/s41467-017-02235-3
An ancient family of lytic polysaccharide monooxygenases with roles in arthropod development and biomass digestion
Federico Sabbadin, Glyn Hemsworth, Luisa Ciano, Bernard Henrissat, Paul P. Dupree, Theodora T. Tryfona, Rita Marques, Sean Sweeney, Katrin Besser, Luisa Elias, Giovanna Pesante, Yi Li, Adam Dowle, Rachel Bates, Leonardo Gomez, Rachael Simister, Gideon Davies, Paul Walton, Neil D.B. Bruce, Simon Mcqueen-Mason
Nature Communications 9:756 (2018)10.1038/s41467-018-03142-x
Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Xiaoyu Liang, Jason Whitham, Evert Holwerda, Xiongjun Shao, Liang Tian, Yu-Wei Wu, Vincent Lombard, Bernard Henrissat, Dawn Klingeman, Zamin Yang, Mircea Podar, Tom Richard, James Elkins, Steven S Brown, Lee Lynd
Biotechnology for Biofuels 11:243 (2018)10.1186/s13068-018-1238-1
Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri
Tammi C. Vesth, Jane L. Nybo, Sebastian Theobald, Jens C. Frisvad, Thomas O. Larsen, Kristian F. Nielsen, Jakob B. Hoof, Julian Brandl, Asaf Salamov, Robert Riley, John M. Gladden, Pallavi Phatale, Morten Nielsen, Ellen Lyhne, Martin E. Kogle, Kimchi Strasser, Erin Mcdonnell, Kerrie Barry, Alicia Clum, Cindy Chen, Kurt Labutti, Sajeet Haridas, Matt Nolan, Laura Sandor, Alan Kuo, Anna Lipzen, Matthieu Hainaut, Elodie Drula, Adrian Tsang, Jon K. Magnuson, Bernard Henrissat, Ad Wiebenga, Blake A. Simmons, Miia R. Mäkelä, Ronald P. de Vries, Igor V. Grigoriev, Uffe H. Mortensen, Scott E. Baker, Mikael R. Handersen
Nature Genetics 50:1688-1695 (2018)10.1038/s41588-018-0246-1
Ancient acquisition of “alginate utilization loci” by human gut microbiota
Sophie Mathieu, Mélanie Touvrey-Loiodice, Laurent Poulet, Sophie Drouillard, Renaud Vincentelli, Bernard Henrissat, Gudmund Skjåk-Bræk, William Helbert
Scientific Reports 8:8075 (2018)10.1038/s41598-018-26104-1
Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids
Ugo Cenci, Shannon Sibbald, Bruce Curtis, Ryoma Kamikawa, Laura Eme, Daniel Moog, Bernard Henrissat, Eric Marechal, Malika Chabi, Christophe Djemiel, Andrew Roger, Eunsoo Kim, John Archibald
BMC Biology 16:137 (2018)10.1186/s12915-018-0593-5
Genome Sequencing and analyses of Two Marine Fungi from the North Sea Unraveled a Plethora of Novel Biosynthetic Gene Clusters
Abhishek Kumar, Jens Laurids Sørensen, Frederik Teilfeldt Hansen, Mikko Arvas, Muhammad Fahad Syed, Lara Hassan, J Philipp Benz, Eric Record, Bernard Henrissat, Stefanie Pöggeler, Frank Kempken, J. Philipp Benz
Scientific Reports 8:10187 (2018)10.1038/s41598-018-28473-z
Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi
Dániel Knapp, Julianna Németh, Kerrie Barry, Matt Hainaut, Bernard Henrissat, Jenifer Johnson, Alan Kuo, Joanne Hui Ping Lim, Anna Lipzen, Matt Nolan, Robin Ohm, László Tamás, Igor Grigoriev, Joseph Spatafora, Laszlo Nagy, Gabor G Kovacs, Matthieu Hainaut
Scientific Reports 8:6321 (2018)10.1038/s41598-018-24686-4
De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads
David W Eccles, Jodie Chandler, Mali Camberis, Bernard Henrissat, Sergey Koren, Graham Le Gros, Jonathan J. Ewbank
BMC Biology 16:6 (2018)10.1186/s12915-017-0473-4
The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet
Alexey Grum-Grzhimaylo, Daniel Falkoski, Joost van den Heuvel, Claudio Valero-Jiménez, Byoungnam Min, In-Geol Choi, Anna Lipzen, Chris Daum, Duur Aanen, Adrian Tsang, Bernard Henrissat, Elena Bilanenko, Ronald de Vries, Jan van Kan, Igor Grigoriev, Alfons Debets
Molecular Ecology 27:4808-4819 (2018)10.1111/mec.14912
Functional metagenomics identifies an exosialidase with an inverting catalytic mechanism that defines a new glycoside hydrolase family (GH156)
Léa Chuzel, Mehul Ganatra, Erdmann Rapp, Bernard Henrissat, Christopher Taron
Journal of Biological Chemistry 293:18138-18150 (2018)10.1074/jbc.RA118.003302
A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation
Alan Cartmell, Li Muñoz-Muñoz, Jonathon Briggs, Didier Ndeh, Elisabeth Lowe, Arnaud Basle, Nicolas Terrapon, Katherine Stott, Tiaan Heunis, Joe Gray, Li Yu, Paul P. Dupree, Pearl Fernandes, Sayali Shah, Spencer Williams, Aurore Labourel, Matthias Trost, Bernard Henrissat, Harry Gilbert, Jose Munoz-Munoz
Nature Microbiology 3:1314-1326 (2018)10.1038/s41564-018-0258-8
Rapid Divergence of Genome Architectures Following the Origin of an Ectomycorrhizal Symbiosis in the Genus Amanita
Jaqueline Hess, Inger Skrede, Maryam Chaib de Mares, Matthieu Hainaut, Bernard Henrissat, Anne Pringle
Molecular Biology and Evolution 35:2786-2804 (2018)10.1093/molbev/msy179
Metagenomic Assembly and Prokaryotic Metagenome-Assembled Genome Sequences from the Northern Gulf of Mexico “Dead Zone”
J Cameron Thrash, Brett Baker, Kiley Seitz, Ben Temperton, Lauren Gillies Campbell, Nancy Rabalais, Bernard Henrissat, Olivia Mason, David Baltrus
Microbiology Resource Announcements 7:1-3 (2018)10.1128/MRA.01033-18
Broad Genomic Sampling Reveals a Smut Pathogenic Ancestry of the Fungal Clade Ustilaginomycotina
Teeratas Kijpornyongpan, Stephen Mondo, Kerrie Barry, Laura Sandor, Juna Lee, Anna Lipzen, Jasmyn Pangilinan, Kurt Labutti, Matthieu Hainaut, Bernard Henrissat, Igor Grigoriev, Joseph Spatafora, M Catherine Aime, Fabia Ursula Battistuzzi
Molecular Biology and Evolution 35:1840-1854 (2018)10.1093/molbev/msy072
Production of α-1,3-L-arabinofuranosidase active on substituted xylan does not improve compost degradation by Agaricus bisporus
Aurin Vos, Edita Jurak, Peter de Gijsel, Robin Ohm, Bernard Henrissat, Luis Lugones, Mirjam Kabel, Han Wösten
PLoS ONE 13:e0201090 (2018)10.1371/journal.pone.0201090
Talaromyces borbonicus , sp. nov., a novel fungus from biodegraded Arundo donax with potential abilities in lignocellulose conversion
Simona Varriale, Jos Houbraken, Zoraide Granchi, Olimpia Pepe, Gabriella Cerullo, Valeria Ventorino, Thomas Chin-A-Woeng, Martin Meijer, Robert Riley, Igor Grigoriev, Bernard Henrissat, Ronald de Vries, Vincenza Faraco
Mycologia 110:316-324 (2018)10.1080/00275514.2018.1456835
Glycosyltransferase genes that cause monogenic congenital disorders of glycosylation are distinct from glycosyltransferase genes associated with complex diseases
Hiren Joshi, Lars Hansen, Yoshiki Narimatsu, Hudson Freeze, Bernard Henrissat, Eric Bennett, Hans Wandall, Henrik Clausen, Katrine Schjoldager
Glycobiology 28:284-294 (2018)10.1093/glycob/cwy015
Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
Irina Druzhinina, Komal Chenthamara, Jian Zhang, Lea Atanasova, Dongqing Yang, Youzhi Miao, Mohammad Rahimi, Marica Grujic, Feng Cai, Shadi Pourmehdi, Kamariah Abu Salim, Carina Pretzer, Alexey Kopchinskiy, Bernard Henrissat, Alan Kuo, Hope Hundley, Mei Wang, Andrea A. Aerts, Asaf Salamov, Anna Lipzen, Kurt Labutti, Kerrie Barry, Igor Grigoriev, Qirong Shen, Christian Kubicek
PLoS Genetics 14:e1007322 (2018)10.1371/journal.pgen.1007322
Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga
Miia Mäkelä, Mao Peng, Zoraide Granchi, Thomas Chin-A-Woeng, Rosa Hegi, Sake van Pelt, Steven Ahrendt, Robert Riley, Matthieu Hainaut, Bernard Henrissat, Igor Grigoriev, Ronald de Vries, Kristiina Hildén
Genome Announcements 6:1414-1431 (2018)10.1128/genomeA.01414-17
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
Rekha Seshadri, Sinead Leahy, Graeme Attwood, Koon Hoong Teh, Suzanne Lambie, Adrian Cookson, Emiley Eloe-Fadrosh, Georgios Pavlopoulos, Michalis Hadjithomas, Neha Varghese, David Páez-Espino, Rechelle Perry, Gemma Henderson, Christopher J. Creevey, Nicolas Terrapon, Pascal Lapébie, Elodie Drula, Vincent Lombard, Edward M. Rubin, Nikos Kyrpides, Bernard Henrissat, Tanja Woyke, Natalia Ivanova, William Kelly, Nikola Palevich, Peter Janssen, Ron Ronimus, Samantha Noel, Priya Soni, Kerri Reilly, Todd Atherly, Cherie Ziemer, Andre-Denis Wright, Suzanne Ishaq, Michael Cotta, Stephanie Thompson, Katie Crosley, Nest Mckain, R John Wallace, Harry Flint, Jennifer Martin, Robert Forster, Robert Gruninger, Tim Mcallister, Rosalind Gilbert, Diane Ouwerkerk, Athol Klieve, Rafat Al Jassim, Stuart Denman, Chris Mcsweeney, Carly Rosewarne, Satoshi Koike, Yasuo Kobayashi, Makoto Mitsumori, Takumi Shinkai, Silvio Cravero, María Cerón Cucchi, Chris Creevey
Nature Biotechnology 36:359-367 (2018)10.1038/nbt.4110
Identification of Euglena gracilis β-1,3-glucan phosphorylase and establishment of a new glycoside hydrolase (GH) family GH149
Sakonwan Kuhaudomlarp, Nicola Patron, Bernard Henrissat, Martin Rejzek, Gerhard Saalbach, Robert W. Field
Journal of Biological Chemistry 293:2865-2876 (2018)10.1074/jbc.RA117.000936
The ectomycorrhizal basidiomycete Laccaria bicolor releases a secreted β-1,4 endoglucanase that plays a key role in symbiosis development
Feng Zhang, George Anasontzis, Aurore Labourel, Charlotte Champion, Mireille Haon, Minna Kemppainen, Carine Commun, Alejandro Pardo, Claire Veneault-Fourrey, Annegret Kohler, Marie-Noelle Rosso, Bernard Henrissat, Jean-Guy Berrin, Francis Martin
New Phytologist 220:1309-1321 (2018)10.1111/nph.15113
Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists
Elena Martino, Emmanuelle Morin, Gwen-Aëlle Grelet, Alan Kuo, Annegret Kohler, Stefania Daghino, Kerrie Barry, Nicolas Cichocki, Alicia Clum, Rhyan Dockter, Matthieu Hainaut, Rita Kuo, Kurt Labutti, Björn Lindahl, Erika Lindquist, Anna Lipzen, Hassine-Radhouane Khouja, Jon Magnuson, Claude Murat, Robin Ohm, Steven Singer, Joseph Spatafora, Mei Wang, Claire Veneault-Fourrey, Bernard Henrissat, Igor Grigoriev, Francis Martin, Silvia Perotto
New Phytologist 217:1213-1229 (2018)10.1111/nph.14974
Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides
Ana R Luis, Jonathon Briggs, Xiaoyang Zhang, Benjamin Farnell, Didier Ndeh, Aurore Labourel, Arnaud Basle, Alan Cartmell, Nicolas Terrapon, Katherine Stott, Elisabeth Lowe, Richard Mclean, Kaitlyn Shearer, Julia Schuckel, Immacolata Venditto, Marie-Christine Ralet, Bernard Henrissat, Eric Martens, Steven Mosimann, D Wade Abbott, Harry Gilbert, D. Wade Abbott
Nature Microbiology 3:210-219 (2018)10.1038/s41564-017-0079-1
Lytic xylan oxidases from wood-decay fungi unlock biomass degradation
Marie Couturier, Simon Ladeveze, Gerlind Sulzenbacher, Luisa Ciano, Mathieu Fanuel, Céline Moreau, Ana Villares, Bernard Cathala, Florence Chaspoul, Kristian Frandsen, Aurore Labourel, Isabelle Gimbert Herpoël-Gimbert, Sacha Grisel, Mireille Haon, Nicolas Lenfant, Hélène Rogniaux, David Ropartz, Gideon Davies, Marie-Noelle Rosso, Paul Walton, Bernard Henrissat, Jean-Guy Berrin
Nature Chemical Biology 14:306-310 (2018)10.1038/nchembio.2558
PULDB: the expanded database of Polysaccharide Utilization Loci
Nicolas Terrapon, Vincent Lombard, Elodie Drula, Pascal Lapébie, Saad Al-Masaudi, Harry Gilbert, Bernard Henrissat
Nucleic Acids Research 46:D677-D683 (2018)10.1093/nar/gkx1022
The human gut microbe Bacteroides thetaiotaomicron encodes the founding member of a novel glycosaminoglycan-degrading polysaccharide lyase family PL29
Didier Ndeh, Jose Munoz Munoz, Alan Cartmell, David Bulmer, Corinne Wills, Bernard Henrissat, Joseph Gray
Journal of Biological Chemistry 293:17906-17916 (2018)10.1074/jbc.RA118.004510
Comparative analysis of basidiomycete transcriptomes reveals a core set of expressed genes encoding plant biomass degrading enzymes
Mao Peng, Maria Victoria Aguilar-Pontes, Matthieu Hainaut, Bernard Henrissat, Kristiina Hildén, Miia R. Makela, Ronald P. de Vries
Fungal Genetics and Biology 112:40-46 (2018)10.1016/j.fgb.2017.08.001
Structural Dynamics and Catalytic Properties of a Multimodular Xanthanase
Olga V. Moroz, Pernille F. Jensen, Sean P. Mcdonald, Nicholas Mcgregor, Elena Blagova, Gerard Comamala, Dorotea R. Seura, Lars Anderson, Santhosh M. Vasu, Vasudeva P. Rao, Lars Giger, Trine Hoist Sorensen, Rune Nygaard Monrad, Allan Svendsen, Jens Nielsen, Bernard Henrissat, Gideon Davies, Harry Brumer, Kasper D. Rand, Keith S. Wilson
ACS Catalysis 8:6021-6034 (2018)10.1021/acscatal.8b00666
Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass
Shingo Miyauchi, Anaïs Rancon, Elodie Drula, Hayat Hage, Delphine Chaduli, Anne Favel, Sacha Grisel, Bernard Henrissat, Isabelle Herpoel-Gimbert, Francisco J. Ruiz-Duenas, Didier Chevret, Matthieu Hainaut, Junyan Lin, Mei Wang, Jasmyn Pangilinan, Anna Lipzen, Laurence Lesage-Meessen, David Navarro, Robert Riley, Igor V. Grigoriev, Simeng Zhou, Sana Raouche, Marie-Noelle Rosso
Biotechnology for Biofuels 11:np (2018)10.1186/s13068-018-1198-5
High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis
Eric C H Chen, Emmanuelle Morin, Denis Beaudet, Jessica Noel, Gokalp Yildirir, Steve Ndikumana, Philippe Charron, Camille St-Onge, John Giorgi, Manuela Krüger, Timea Marton, Jeanne Ropars, Igor V. Grigoriev, Matthieu Hainaut, Bernard Henrissat, Christophe Roux, Francis Martin, Nicolas Corradi
New Phytologist 220:1161-1171 (2018)10.1111/nph.14989
Novel carbohydrate binding modules in the surface anchored α-amylase of Eubacterium rectale provide a molecular rationale for the range of starches used by this organism in the human gut
Darrell Cockburn, Carolyn Suh, Krizia Perez Medina, Rebecca Duvall, Zdzislaw Wawrzak, Bernard Henrissat, Nicole Koropatkin
Molecular Microbiology 107:249-264 (2018)10.1111/mmi.13881
Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes
Wade Abbott, Orly Alber, Ed Bayer, Jean-Guy Berrin, Alisdair Boraston, Harry Brumer, Ryszard Brzezinski, Anthony Clarke, Beatrice Cobucci-Ponzano, Darrell Cockburn, Pedro Coutinho, Mirjam Czjzek, Bareket Dassa, Gideon John Davies, Vincent Eijsink, Jens Eklof, Alfons Felice, Elizabeth Ficko-Blean, Geoff Pincher, Thierry Fontaine, Zui Fujimoto, Kiyotaka Fujita, Shinya Fushinobu, Harry Gilbert, Tracey Gloster, Ethan Goddard-Borger, Ian Greig, Jan-Hendrik Hehemann, Glyn Hemsworth, Bernard Henrissat, Masafumi Hidaka, Ramon Hurtado-Guerrero, Kiyohiko Igarashi, Takuya Ishida, Stefan Janecek, Seino Jongkees, Nathalie Juge, Satoshi Kaneko, Takane Katayama, Motomitsu Kitaoka, Naotake Konno, Daniel Kracher, Anna Kulminskaya, Alicia Lammerts van Bueren, Sine Larsen, Junho Lee, Markus Linder, Leila Loleggio, Roland Ludwig, Ana Luis, Mirko Maksimainen, Brian Mark, Richard Mclean, Gurvan Michel, Cédric Montanier, Marco Moracci, Haruhide Mori, Hiroyuki Nakai, Wim Nerinckx, Takayuki Ohnuma, Richard Pickersgill, Kathleen Piens, Tirso Pons, Etienne Rebuffet, Peter Reilly, Magali Remaud Simeon, Brian Rempel, Kyle Robinson, David Rose, Juha Rouvinen, Wataru Saburi, Yuichi Sakamoto, Mats Sandgren, Fathima Shaikh, Yuval Shoham, Franz St John, Jerry Stahlberg, Michael Suits, Gerlind Sulzenbacher, Tomomi Sumida, Ryuichiro Suzuki, Birte Svensson, Toki Taira, Ed Taylor, Takashi Tonozuka, Breeanna Urbanowicz, Gustav Vaaje-Kolstad, Wim van den Ende, Annabelle Varrot, Maxime Versluys, Florence Vincent, David Vocadlo, Warren Wakarchuk, Tom Wennekes, Rohan Williams, Spencer Williams, David Wilson, Stephen Withers, Katsuro Yaoi, Vivian Yip, Ran Zhang
Glycobiology 28:3-8 (2018)10.1093/glycob/cwx089
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle
Claude Murat, Thibaut Payen, Benjamin Noël, Alan Kuo, Emmanuelle Morin, Juan Chen, Annegret Kohler, Krisztina Krizsán, Raffaella Balestrini, Corinne da Silva, Barbara Montanini, Matthieu Hainaut, Elisabetta Levati, Kerrie Barry, Beatrice Belfiori, Nicolas Cichocki, Alicia Clum, Rhyan Dockter, Laure Fauchery, Julie Guy, Mirco Iotti, François F. Le Tacon, Erika Lindquist, Anna Lipzen, Fabienne Malagnac, Antonietta Mello, Virginie Molinier, Shingo Miyauchi, Julie Poulain, Claudia Riccioni, Andrea Rubini, Yaron Sitrit, Richard Splivallo, Stefanie S. Traeger, Mei Wang, Daniel Wipf, Alessandra Zambonelli, Francesco Paolocci, Minou Nowrousian, Simone Ottonello, Petr Baldrian, Joseph Spatafora, Bernard Henrissat, Laszlo Nagy, Jean-Marc Aury, Patrick Wincker, Igor Grigoriev, Paola Bonfante, Francis Martin
Nature Ecology & Evolution 2:1956-1965 (2018)10.1038/s41559-018-0710-4
2017
Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters
Jean-Félix Dallery, Nicolas Lapalu, Antonios Zampounis, Sandrine Pigné, Isabelle Luyten, Joëlle Amselem, Alexander Wittenberg, Shiguo Zhou, Marisa de Queiroz, Guillaume Robin, Annie Auger, Matthieu Hainaut, Bernard Henrissat, Ki-Tae Kim, Yong-Hwan Lee, Olivier Lespinet, David Schwartz, Michael Thon, Richard O'Connell
BMC Genomics 18:667 (2017)10.1186/s12864-017-4083-x
The yeast Geotrichum candidum encodes functional lytic polysaccharide monooxygenases
Simon Ladevèze, Mireille Haon, Ana Villares, Bernard Cathala, Sacha Grisel, Isabelle Herpoël-Gimbert, Bernard Henrissat, Jean-Guy Berrin
Biotechnology for Biofuels 10 (2017)10.1186/s13068-017-0903-0
Structural and electronic determinants of lytic polysaccharide monooxygenase reactivity on polysaccharide substrates
T. Simmons, K.E.H Frandsen, L Ciano, T Tryfona, N Lenfant, J C Poulsen, L Wilson, T Tandrup, M Tovborg, K Schnorr, K. Johansen, Bernard Henrissat, P. Walton, L Lo Leggio, P. Dupree
Nature Communications 8:1064 (2017)10.1038/s41467-017-01247-3
Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation
Olov Svartström, Johannes Alneberg, Nicolas Terrapon, Vincent Lombard, Ino de Bruijn, Jonas Malmsten, Ann-Marie Dalin, Emilie El Muller, Pranjul Shah, Paul Wilmes, Bernard Henrissat, Henrik Aspeborg, Anders Andersson
The International Society of Microbiologial Ecology Journal 11:2538-2551 (2017)10.1038/ismej.2017.108
Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis
Eleni Gentekaki, Bruce Curtis, Courtney Stairs, Vladimír Klimeš, Marek Eliáš, Dayana Salas-Leiva, Emily Herman, Laura Eme, Maria Arias, Bernard Henrissat, Frederique Hilliou, Mary Klute, Hiroshi Suga, Shehre-Banoo Malik, Arthur Pightling, Martin Kolisko, Richard Rachubinski, Alexander Schlacht, Darren Soanes, Anastasios Tsaousis, John Archibald, Steven Ball, Joel B Dacks, C Graham Clark, Mark van Der Giezen, Andrew Roger
PLoS Biology 15:e2003769 (2017)10.1371/journal.pbio.2003769
How a Glycoside Hydrolase Recognizes a Helical Polyglucan
Bernard Henrissat, Marie-Line Garron
Structure 25:1319-1321 (2017)10.1016/j.str.2017.08.004
Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens
J. Uehling, A. Gryganskyi, K. Hameed, T. Tschaplinski, P.K. Misztal, S. Wu, A. Desirò, N. Vande Pol, Z. Du, A. Zienkiewicz, K. Zienkiewicz, E. Morin, E. Tisserant, R. Splivallo, M. Hainaut, Bernard Henrissat, R. Ohm, A. Kuo, J. Yan, A. Lipzen, M. Nolan, K. Labutti, K. Barry, A.H. Goldstein, J. Labbé, C. Schadt, G. Tuskan, I. Grigoriev, F. Martin, R. Vilgalys, G. Bonito
Environmental Microbiology 19:2964-2983 (2017)10.1111/1462-2920.13669
Characterization of a mycobacterial cellulase and its impact on biofilm- and drug-induced cellulose production
Niël van Wyk, David Navarro, Mickaël Blaise, Jean-Guy Berrin, Bernard Henrissat, Michel Drancourt, Laurent Kremer
Glycobiology 27:392-399 (2017)10.1093/glycob/cwx014
Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels
Weihua Wu, Ryan Davis, Mary Bao Tran-Gyamfi, Alan Kuo, Kurt Labutti, Sirma Mihaltcheva, Hope Hundley, Mansi Chovatia, Erika Lindquist, Kerrie Barry, Igor Grigoriev, Bernard Henrissat, John Gladden
Applied Microbiology and Biotechnology 101:2603-2618 (2017)10.1007/s00253-017-8091-1
Discovery of genes coding for carbohydrate-active enzyme by metagenomic analysis of lignocellulosic biomasses
Salvatore Montella, Valeria Ventorino, Vincent Lombard, Bernard Henrissat, Olimpia Pepe, Vincenza Faraco
Scientific Reports 7:42623 (2017)10.1038/srep42623
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus
Ronald P. De Vries, Robert Riley, Ad Wiebenga, Guillermo Aguilar-Osorio, Sotiris Amillis, Cristiane Akemi Uchima, Gregor Anderluh, Mojtaba Asadollahi, Marion Askin, Kerrie Barry, Evy Battaglia, Tiziano Benocci, Susanna A. Braus-Stromeyer, Camila Caldana, David Canovas, Gustavo C. Cerqueira, Fusheng Chen, Wanping Chen, Cindy Choi, Alicia Clum, Renato Augusto Correa Dos Santos, Andre Ricardo De Lima Damasio, George Diallinas, Tamas Emri, Erzsébet Fekete, Michel Flipphi, Susanne Freyberg, Antonia Gallo, Christos Gournas, Rob Habgood, Matthieu Hainaut, Maria Laura Harispe, Bernard Henrissat, Kristiina S. Hilden, Ryan Hope, Abeer Hossain, Eugenia Karabika, Levente Karaffa, Zsolt Karanyi, Nada Krasevec, Alan Kuo, Harald Kusch, Kurt Labutti, Ellen L. Lagendijk, Alla Lapidus, Anthony Levasseur, Erika Lindquist, Anna Lipzen, Antonio F. Logrieco, Andrew Maccabe, Miia R. Makela, Iran Malavazi, Petter Melin, Vera Meyer, Natalia Mielnichuk, Marton Miskei, Akos P. Molnar, Giuseppina Mulé, Chew Yee Ngan, Margarita Orejas, Erzsebet Orosz, Jean Paul Ouedraogo, Karin M. Overkamp, Hee-Soo Park, Giancarlo Perrone, François Piumi, Peter J. Punt, Arthur F. J. Ram, Ana Ramón, Stefan Rauscher, Eric Record, Diego Mauricio Riaño-Pachón, Vincent Robert, Julian Roehrig, Roberto Ruller, Asaf Salamov, Nadhira S. Salih, Rob A. Samson, Erzsébet Sándor, Manuel Sanguinetti, Tabea Schutze, Kristina Sepcic, Ekaterina Shelest, Gavin Sherlock, Vicky Sophianopoulou, Fabiom. Squina, Hui Sun, Antonia Susca, Richard B. Todd, Adrian Tsang, Shiela E. Unkles, Nathalie van De Wiele, Diana Van Rossen-Uffink, Juliana Velasco De Castro Oliveira, Tammi C. Vesth, Jaap Visser, Jae-Hyuk Yu, Miaomiao Zhou, Mikael R. Andersen, David B. Archer, Scott E. Baker, Isabelle Benoit, Axel A. Brakhage, Gerhard H. Braus, Reinhard Fischer, Jens C. Frisvad, Gustavo H. Goldman, Jos Houbraken, Berl Oakley, Istvan Pocsi, Claudio Scazzocchio, Bernhard Seiboth, Patricia A. Vankuyk, Jennifer Wortman, Paul S. Dyer, Igor V. Grigoriev
Genome Biology 18:np (2017)10.1186/s13059-017-1151-0
Current perspectives on the families of glycoside hydrolases of Mycobacterium tuberculosis: their importance and prospects for assigning function to unknowns
Niel Van Wyk, Michel Drancourt, Bernard Henrissat, Laurent Kremer
Glycobiology 27:112-122 (2017)10.1093/glycob/cww099
Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome
Lizi Bensoussan, Sarah Moraïs, Bareket Dassa, Nir Friedman, Bernard Henrissat, Vincent Lombard, Edward Bayer, Itzhak Mizrahi
Environmental Microbiology 19:185-197 (2017)10.1111/1462-2920.13561
A parts list for fungal cellulosomes revealed by comparative genomics
Charles H. Haitjema, Sean P. Gilmore, John K. Henske, Kevin V. Solomon, Randall de Groot, Alan Kuo, Stephen J. Mondo, Asaf A. Salamov, Kurt Labutti, Zhiying Zhao, Jennifer Chiniquy, Kerrie Barry, Heather M. Brewer, Samuel O. Purvine, Aaron T. Wright, Matthieu Hainaut, Brigitte Boxma, Theo van Alen, Johannes H. P. Hackstein, Bernard Henrissat, Scott E. Baker, Igor V. Grigoriev, Michelle A. O'Malley
Nature Microbiology 2:17087 (2017)10.1038/nmicrobiol.2017.87
An evolutionarily distinct family of polysaccharide lyases removes rhamnose capping of complex arabinogalactan proteins
Jose Munoz-Munoz, Alan Cartmell, Nicolas Terrapon, Arnaud Basle, Bernard Henrissat, Harry J. Gilbert
Journal of Biological Chemistry 292:13271-13283 (2017)10.1074/jbc.M117.794578
Complex pectin metabolism by gut bacteria reveals novel catalytic functions
Didier Ndeh, Artur Rogowski, Alan Cartmell, Ana S. Luis, Arnaud Basle, Joseph Gray, Immacolata Venditto, Jonathon Briggs, Xiaoyang Zhang, Aurore Labourel, Nicolas Terrapon, Fanny Buffetto, Sergey Nepogodiev, Yao Xiao, Robert A. Field, Yanping Zhu, Malcolm A. O'Neill, Breeanna R. Urbanowicz, William S. York, Gideon J. Davies, D. Wade Abbott, Marie-Christine Ralet-Renard, Eric C. Martens, Bernard Henrissat, Harry J. Gilbert
Nature 544:65-+ (2017)10.1038/nature21725
A bioinformatics analysis of 3400 lytic polysaccharide oxidases from family AA9
Nicolas Lenfant, Matthieu Hainaut, Nicolas Terrapon, Elodie Drula, Vincent Lombard, Bernard Henrissat
Carbohydrate Research 448:166-174 (2017)10.1016/j.carres.2017.04.012
Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2
Ahmad Ali-Ahmad, Marie-Line Garron, Véronique Roig-Zamboni, Nicolas Lenfant, Didier Nurizzo, Bernard Henrissat, Jean-Guy Berrin, Yves Bourne, Florence Vincent
Journal of Structural Biology 197:227-235 (2017)10.1016/j.jsb.2016.11.004
Unusual active site location and catalytic apparatus in a glycoside hydrolase family
Jose Munoz-Munoz, Alan Cartmell, Nicolas Terrapon, Bernard Henrissat, Harry J. Gilbert
Proceedings of the National Academy of Sciences of the United States of America 114:4936-4941 (2017)10.1073/pnas.1701130114
Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12
Jill Gaskell, Phil Kersten, Luis Larrondo, Paulo Canessa, Diego Martínez, David Hibbett, Monika Schmoll, Christian Kubicek, Angel Martinez, Jagjit Yadav, Emma Master, Jon Karl Magnuson, Debbie Yaver, Randy Berka, Kathleen Lail, Cindy Chen, Kurt Labutti, Matt Nolan, Anna Lipzen, Andrea A. Aerts, Robert Riley, Kerrie Barry, Bernard Henrissat, Robert Blanchette, Igor Grigoriev, Dan Cullen
Genomics Data 14:21-23 (2017)10.1016/j.gdata.2017.08.003
Exploring the genomic diversity of black yeasts and relatives ( Chaetothyriales , Ascomycota )
M. Teixeira, L. Moreno, B. Stielow, A. Muszewska, M. Hainaut, L. Gonzaga, A. Abouelleil, S. Patané, M. Priest, R. Souza, S. Young, S. Ferreira, Q. Zeng, M.M.L. da Cunha, A. Gladki, B. Barker, A. Vicente, E.M. de Souza, S. Almeida, Bernard Henrissat, A. Vasconcelos, S. Deng, H. Voglmayr, A. Moussa, A. Gorbushina, M.S.S. Felipe, C.A. Cuomo, G. Sybren de Hoog
Studies in Mycology 86:1-28 (2017)10.1016/j.simyco.2017.01.001
A Metagenomics Investigation of Carbohydrate-Active Enzymes along the Gastrointestinal Tract of Saudi Sheep
Saad Al-Masaudi, Abdessamad El Kaoutari, Elodie Drula, Hussein Al-Mehdar, Elrashdy M. Redwan, Vincent Lombard, Bernard Henrissat
Frontiers in Microbiology 8:np (2017)10.3389/fmicb.2017.00666
A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic
Orlane Patrascu, Fabienne Beguet-Crespel, Ludovica Marinelli, Emmanuelle Le Chatelier, Anne-Laure Abraham, Marion Leclerc, Christophe Klopp, Nicolas Terrapon, Bernard Henrissat, Hervé Blottiere, Joël Dore, Christel Maillet
Scientific Reports 7:np (2017)10.1038/srep40248
Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters
Jean-Felix Dallery, Nicolas Lapalu, Antonios Zampounis, Sandrine Pigné, Isabelle Luyten, Joelle Amselem, Alexander H. J. Wittenberg, Shiguo Zhou, Marisa V. de Queiroz, Guillaume Robin, Annie Auger, Matthieu Hainaut, Bernard Henrissat, Ki-Tae Kim, Yong-Hwan Lee, Olivier Lespinet, David C. Schwartz, Michael R. Thon, Richard O'Connell
BMC Genomics 18:np (2017)10.1186/s12864-017-4083-x
The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi
Mao Peng, Adiphol Dilokpirnol, Miia R. Makela, Kristiina Hilden, Sander Bervoets, Robert Riley, Igor V. Grigoriev, Matthieu Hainaut, Bernard Henrissat, Ronald P. de Vries, Zoraide Granchi
Journal of Biotechnology 246:1-3 (2017)10.1016/j.jbiotec.2017.02.012
Archaea: Essential inhabitants of the human digestive microbiota
Vanessa Demonfort Nkamga, Bernard Henrissat, Michel Drancourt
Human Microbiome Journal 3:1-8 (2017)10.1016/j.humic.2016.11.005
Pan-Cellulosomics of Mesophilic Clostridia: Variations on a Theme
Bareket Dassa, Ilya Borovok, Vincent Lombard, Bernard Henrissat, Raphael Lamed, Edward Bayer, Sarah Moraïs
Microorganisms 5:74 (2017)10.3390/microorganisms5040074
Unique organization and unprecedented diversity of the Bacteroides (Pseudobacteroides) cellulosolvens cellulosome system
Olga Zhivin, Bareket Dassa, Sarah Moraïs, Sagar Utturkar, Steven Brown, Bernard Henrissat, Raphael Lamed, Edward Bayer
Biotechnology for Biofuels 10:211 (2017)10.1186/s13068-017-0898-6
Metabolic roles of uncultivated bacterioplankton lineages in the northern gulf of Mexico "Dead Zone
J. Cameron Thrash, Kiley W. Seitz, Brett J. Baker, Ben Temperton, Lauren E. Gillies, Nancy N. Rabalais, Bernard Henrissat, Olivia U. Mason, Bernard Henrissat
mBio 8 (2017)10.1128/mBio.01017-17
Comparative Metagenomics of Cellulose- and Poplar Hydrolysate-Degrading Microcosms from Gut Microflora of the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus) after Long-Term Enrichment
Mabel Wong, Weijun Wang, Marie Couturier, Fakhria Razeq, Vincent Lombard, Pascal Lapébie, Elizabeth Edwards, Nicolas Terrapon, Bernard Henrissat, Emma Master
Frontiers in Microbiology 8:2504 (2017)10.3389/fmicb.2017.02504
A metagenome-derived thermostable β-glucanase with an unusual module architecture which defines the new glycoside hydrolase family GH148
Angel Angelov, Vu Thuy Trang Pham, Maria Übelacker, Silja Brady, Benedikt Leis, Nicole Pill, Judith Brolle, Matthias Mechelke, Matthias Moerch, Bernard Henrissat, Wolfgang Liebl
Scientific Reports 7:17306 (2017)10.1038/s41598-017-16839-8
How members of the human gut microbiota overcome the sulfation problem posed by glycosaminoglycans
Alan Cartmell, Elisabeth Lowe, Arnaud Basle, Susan Firbank, Didier Ndeh, Heath Murray, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Jeremy E Turnbull, Mirjam Czjzek, Harry Gilbert, David Bolam
Proceedings of the National Academy of Sciences of the United States of America 114:7037-7042 (2017)10.1073/pnas.1704367114
Feed in summer, rest in winter: microbial carbon utilization in forest topsoil
Lucia Zifcakova, Tomas Vetrovsky, Vincent Lombard, Bernard Henrissat, Adina Howe, Petr Baldrian
Microbiome 5:np (2017)10.1186/s40168-017-0340-0
2016
CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems
Anne Abot, Grégory Arnal, Lucas Auer, Adèle Lazuka, Delphine Labourdette, Sophie Lamarre, Lidwine Trouilh, Elisabeth Laville, Vincent Lombard, Gabrielle Potocki-Veronese, Bernard Henrissat, Michael O’donohue, Guillermina Hernandez-Raquet, Claire Dumon, Véronique Le Berre
BMC Genomics 17:1-12 (2016)10.1186/s12864-016-2988-4
Metagenomics unveils the attributes of the alginolytic guilds of sediments from four distant cold coastal environments
Marina N. Matos, Mariana Lozada, Luciano E. Anselmino, Matias A. Musumeci, Bernard Henrissat, Janet K. Jansson, Walter P. Mac Cormack, Jolynn Carroll, Sara Sjoling, Leif Lundgren, Hebe M. Dionisi
Environmental Microbiology 18:4471-4484 (2016)10.1111/1462-2920.13433
The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria.
Boyang Ji, Sheng-Da Zhang, Wei-Jia Zhang, Zoe Rouy, François Alberto, Claire-Lise Santini, Sophie Mangenot, Séverine Gagnot, Nadège Philippe, Nathalie Pradel, Lichen Zhang, Sébastien Tempel, Ying Li, Claudine Médigue, Bernard Henrissat, Pedro M Coutinho, Valérie Barbe, Emmanuel Talla, Long-Fei Wu
Environmental Microbiology doi: 10.1111/1462-2920.13637 (2016)10.1111/1462-2920.13637
A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility
Mahesh S. Desai, Anna M. Seekatz, Nicole M. Koropatkin, Nobuhiko Kamada, Christina A. Hickey, Mathis Wolter, Nicholas A. Pudlo, Sho Kitamoto, Nicolas Terrapon, Arnaud Muller, Vincent B. Young, Bernard Henrissat, Paul Wilmes, Thaddeus S. Stappenbeck, Gabriel Nunez, Eric C. Martens
Cell 167:1339-1353 (2016)10.1016/j.cell.2016.10.043
CAZyme content of Pochonia chlamydosporia reflects that chitin and chitosan modification are involved in nematode parasitism
Almudena Aranda-Martinez, Nicolas Lenfant, Nuria Escudero, Ernesto A. Zavala-Gonzalez, Bernard Henrissat, Luis V. Lopez-Llorca
Environmental Microbiology 18:4200-4215 (2016)10.1111/1462-2920.13544
Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2
S. Haridas, R. Albert, M. Binder, J. Bloem, Kurt Labutti, A. Salamov, B. Andreopoulos, S.E. Baker, Kerrie Barry, G. Bills, B.H. Bluhm, C. Cannon, R. Castanera, D.E. Culley, C. Daum, D. Ezra, J.B. González, Bernard Henrissat, A. Kuo, C. Liang, Anna Lipzen, F. Lutzoni, J. Magnuson, S.J. Mondo, M. Nolan, R.A. Ohm, J. Pangilinan, H.-J. Park, L. Ramírez, M. Alfaro, H. Sun, A. Tritt, Y. Yoshinaga, L.-H. Zwiers, B.G. Turgeon, S.B. Goodwin, J.W. Spatafora, P.W. Crous, I.V. Grigoriev, Thirumalaiselvi Ulaganathan, Rong Shi, Deqiang Yao, Ruo-Xu Gu, Marie-Line Garron, Maia Cherney, D Peter Tieleman, Eric Sterner, Guoyun Li, Lingyun Li, Robert Linhardt, Miroslaw Cygler, Niël van Wyk, Michel Drancourt, Laurent Kremer, Otto Miettinen, Robert Riley, Dan Cullen, Ronald de Vries, Matthieu Hainaut, Annele Hatakka, Kristiina Hildén, Rita Kuo, Miia Mäkelä, Laura Sandor, Joseph Spatafora, Igor Grigoriev, David Hibbett
Genome Announcements 4:112-122 (2016)10.1128/genomeA.00976-16
The Mechanism by Which Arabinoxylanases Can Recognize Highly Decorated Xylans
Aurore Labourel, Lucy I. Crouch, Joana L. A. Bras, Adam Jackson, Artur Rogowski, Joseph Gray, Madhav P. Yadav, Bernard Henrissat, Carlos M. G. A. Fontes, Harry J. Gilbert, Shabir Najmudin, Arnaud Basle, Fiona Cuskin
Journal of Biological Chemistry 291:22149-22159 (2016)10.1074/jbc.M116.743948
Erratum: Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi
Stéphane Hacquard, Barbara Kracher, Kei Hiruma, Philipp C. Münch, Ruben Garrido-Oter, Michael R. Thon, Aaron Weimann, Ulrike Damm, Jean-Félix Dallery, Matthieu Hainaut, Bernard Henrissat, Olivier Lespinet, Soledad Sacristán, Emiel Ver Loren van Themaat, Eric Kemen, Alice C. Mchardy, Paul Schulze-Lefert, Richard O'Connell
Nature Communications 7 (2016)10.1038/ncomms13072
Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi
Stéphane Hacquard, Barbara Kracher, Kei Hiruma, Philipp Münch, Ruben Garrido-Oter, Michael Thon, Aaron Weimann, Ulrike Damm, Jean-Félix Dallery, Matthieu Hainaut, Bernard Henrissat, Olivier Lespinet, Soledad Sacristán, Emiel Ver Loren van Themaat, Eric Kemen, Alice Mchardy, Paul Schulze-Lefert, Richard O'Connell
Nature Communications 7:11362 (2016)10.1038/ncomms11362
Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum
Martina Peter, Annegret Kohler, Robin A. Ohm, Alan Kuo, Jennifer Kruetzmann, Emmanuelle Morin, Matthias Arend, Kerrie W. Barry, Manfred Binder, Cindy Choi, Alicia Clum, Alex Copeland, Nadine Grisel, Sajeet Haridas, Tabea Kipfer, Kurt Labutti, Erika Lindquist, Anna Lipzen, Renaud Maire, Barbara Meier, Sirma Mihaltcheva, Virginie Molinier, Claude Murat, Stefanie Poeggeler, C. Alisha Quandt, Christoph Sperisen, Andrew Tritt, Emilie Tisserant, Pedro W. Crous, Bernard Henrissat, Uwe Nehls, Simon Egli, Joseph W. Spatafora, Igor V. Grigoriev, Francis M. Martin
Nature Communications 7:1-15 (2016)10.1038/ncomms12662
Understanding plant cell-wall remodelling during the symbiotic interaction between Tuber melanosporum and Corylus avellana using a carbohydrate microarray
Fabiano Sillo, Jonatan U. Fangel, Bernard Henrissat, Antonella Faccio, Paola Bonfante, Francis Martin, William G. T. Willats, Raffaella Balestrini
Planta 244:347-359 (2016)10.1007/s00425-016-2507-5
Draft Genome Sequence of the Deep-Sea Basidiomycetous Yeast Cryptococcus sp. Strain Mo29 Reveals Its Biotechnological Potential
V. Redou, A. Kumar, M. Hainaut, Bernard Henrissat, E. Record, G. Barbier, G. Burgaud
Genome Announcements 4 (2016)
Functional Exploration of the Polysaccharide Lyase Family PL6
Sophie Mathieu, Bernard Henrissat, Flavien Labre, Gudmund Skjak-Braek, William Helbert
PLoS ONE 11:1-15 (2016)10.1371/journal.pone.0159415
The mucin-degradation strategy of Ruminococcus gnavus: The importance of intramolecular trans-sialidases
E. H. Crost, L. E. Tailford, M. Monestier, D. Swarbreck, Bernard Henrissat, L. C. Crossman, N. Juge
Gut microbes 7:302-312 (2016)
Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication
Luis M. Corrochano, Alan Kuo, Marina Marcet-Houben, Silvia Polaino, Asaf Salamov, Jose M. Villalobos-Escobedo, Jane Grimwood, M. Isabel Alvarez, Javier Avalos, Diane Bauer, Ernesto P. Benito, Isabelle Benoit, Gertraud Burger, Lola P. Camino, David Canovas, Enrique Cerda-Olmedo, Jan-Fang Cheng, Angel Dominguez, Marek Elias, Arturo P. Eslava, Fabian Glaser, Gabriel Gutierrez, Joseph Heitman, Bernard Henrissat, Enrique A. Iturriaga, B. Franz Lang, Jose L. Lavin, Soo Chan Lee, Wenjun Li, Erika Lindquist, Sergio Lopez-Garcia, Eva M. Luque, Ana T. Marcos, Joel Martin, Kevin Mccluskey, Humberto R. Medina, Alejandro Miralles-Duran, Atsushi Miyazaki, Elisa Munoz-Torres, Jose A. Oguiza, Robin A. Ohm, Maria Olmedo, Margarita Orejas, Lucila Ortiz-Castellanos, Antonio G. Pisabarro, Julio Rodriguez-Romero, Jose Ruiz-Herrera, Rosa Ruiz-Vazquez, Catalina Sanz, Wendy Schackwitz, Mahdi Shahriari, Ekaterina Shelest, Fatima Silva-Franco, Darren Soanes, Khajamohiddin Syed, Victor G. Tagua, Nicholas J. Talbot, Michael R. Thon, Hope Tice, Ronald P. De Vries, Ad Wiebenga, Jagjit S. Yadav, Edward L. Braun, Scott E. Baker, Victoriano Garre, Jeremy Schmutz, Benjamin A. Horwitz, Santiago Torres-Martinez, Alexander Idnurm, Alfredo Herrera-Estrella, Toni Gabaldon, Igor V. Grigoriev
Current Biology - CB 26:1577-1584 (2016)10.1016/j.cub.2016.04.038
Complexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition
Immacolata Venditto, Ana S. Luis, Maja Rydahl, Julia Schuckel, Vania O. Fernandes, Silvia Vidal-Melgosa, Pedro Bule, Arun Goyal, Virginia M. R. Pires, Catarina G. Dourado, Luis M. A. Ferreira, Pedro M Coutinho, Bernard Henrissat, J. Paul Knox, Arnaud Basle, Shabir Najmudin, Harry J. Gilbert, William G. T. Willats, Carlos M. G. A. Fontes
Proceedings of the National Academy of Sciences of the United States of America 113:7136-7141 (2016)10.1073/pnas.1601558113
The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence
Sebastian Eves-van Den Akker, Dominik R. Laetsch, Peter Thorpe, Catherine J. Lilley, Etienne G. J. Danchin, Martine da Rocha, Corinne Rancurel, Nancy E. Holroyd, James A. Cotton, Amir Szitenberg, Eric Grenier, Josselin Montarry, Benjamin Mimee, Marc-Olivier Duceppe, Ian Boyes, Jessica M. C. Marvin, Laura M. Jones, Hazijah B. Yusup, Joel Lafond-Lapalme, Magali Esquibet, Michael Sabeh, Michael Rott, Hein Overmars, Anna Finkers-Tomczak, Geert Smant, Georgios Koutsovoulos, Vivian Blok, Sophie Mantelin, Peter J. A. Cock, Wendy Phillips, Bernard Henrissat, Peter E. Urwin, Mark Blaxter, John T. Jones
Genome Biology 17:1-23 (2016)10.1186/s13059-016-0985-1
Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis
Jordane Despres, Evelyne Forano, Pascale Lepercq, Sophie Comtet-Marre, Grégory Jubelin, Carl J. Yeoman, Margret E. Berg Miller, Christopher J. Fields, Nicolas Terrapon, Carine Le Bourvellec, Catherine M. G. C. Renard, Bernard Henrissat, Bryan A. White, Pascale Mosoni
BMC Genomics 27 (2016)10.1186/s12864-016-2758-3
Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi
Stéphane Hacquard, Barbara Kracher, Kei Hiruma, Philipp C. Münch, Ruben Garrido-Oter, Michael R. Thon, Aaron Weimann, Ulrike Damm, Jean-Félix Dallery, Matthieu Hainaut, Bernard Henrissat, Olivier Lespinet, Soledad Sacristán, Emiel Ver Loren van Themaat, Eric Kemen, Alice C. Mchardy, Paul Schulze-Lefert, Richard O'Connell
Nature Communications 7:1-12 (2016)10.1038/ncomms11362
Glycans affect DNA extraction and induce substantial differences in gut metagenomic studies
Emmanouil Angelakis, Dipankar Bachar, Bernard Henrissat, Fabrice Armougom, Gilles Audoly, Jean-Christophe J.-C. Lagier, Catherine Robert, Didier Raoult
Scientific Reports 6 (2016)10.1038/srep26276
Xylan degradation by the human gut Bacteroides xylanisolvens XB1A(T) involves two distinct gene clusters that are linked at the transcriptional level
Jordane Despres, Evelyne Forano, Pascale Lepercq, Sophie Comtet-Marre, Grégory Jubelin, Christophe Chambon, Carl J. Yeoman, Margaret E. Berg Miller, Christopher J. Fields, Eric Martens, Nicolas Terrapon, Bernard Henrissat, Bryan A. White, Pascale Mosoni
BMC Genomics 17 (2016)10.1186/s12864-016-2680-8
The molecular basis of polysaccharide cleavage by lytic polysaccharide monooxygenases
Kristian E. H. Frandsen, Thomas J. Simmons, Paul Dupree, Jens-Christian N. Poulsen, Glyn R. Hemsworth, Luisa Ciano, Esther M. Johnston, Morten Tovborg, Katja S. Johansen, Pernille Von Freiesleben, Laurence Marmuse, Sebastien Fort, Sylvain Cottaz, Hugues Driguez, Bernard Henrissat, Nicolas Lenfant, Floriana Tuna, Amgalanbaatar Baldansuren, Gideon J. Davies, Leila Lo Leggio, Paul H. Walton
Nature Chemical Biology 12:298+ (2016)10.1038/NCHEMBIO.2029
Dividing the Large Glycoside Hydrolase Family 43 into Subfamilies: a Motivation for Detailed Enzyme Characterization
Keith Mewis, Nicolas Lenfant, Vincent Lombard, Bernard Henrissat
Applied and Environmental Microbiology 82:1686-1692 (2016)10.1128/AEM.03453-15
MICROBIOME Gut bacteria that prevent growth impairments transmitted by microbiota from malnourished children
Laura V. Blanton, Mark R. Charbonneau, Tarek Salih, Michael J. Barratt, Siddarth Venkatesh, Olga Ilkaveya, Sathish Subramanian, Mark J. Manary, Indi Trehan, Josh M. Jorgensen, Yue-Mei Fan, Bernard Henrissat, Semen A. Leyn, Dmitry A. Rodionov, Andrei L. Osterman, Kennethm. Maleta, Christopher B. Newgard, Per Ashorn, Kathryn G. Dewey, Jeffrey I. Gordon
Science 351:830-U57 (2016)10.1126/science.aad3311
Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi
Carolyn A. Zeiner, Samuel O. Purvine, Erika M. Zink, Ljiljana Pasa-Tolic, Dominique L. Chaput, Sajeet Haridas, Si Wu, Kurt Labutti, Igor V. Grigoriev, Bernard Henrissat, Cara M. Santelli, Colleen M. Hansel
PLoS ONE 11:e0157844 (2016)10.1371/journal.pone.0157844
The Quaternary Structure of a Glycoside Hydrolase Dictates Specificity toward β-Glucans
Mickael Lafond, Gerlind Sulzenbacher, Thibaud Freyd, Bernard Henrissat, Jean-Guy Berrin, Marie-Line Garron
Journal of Biological Chemistry 291:7183-7194 (2016)10.1074/jbc.M115.695999
Single-domain flavoenzymes trigger lytic polysaccharide monooxygenases for oxidative degradation of cellulose
Sona Garajova, Yann Mathieu, Maria Rosa Beccia, Chloé Bennati-Granier, Frédéric Biaso, Mathieu Fanuel, David D. Ropartz, Bruno Guigliarelli, Eric Record, Helene H. Rogniaux-Bonaventure, Bernard Henrissat, Jean-Guy J.-G. Berrin
Scientific Reports 6:Article number: 28276 (2016)10.1038/srep28276
Composting-Like Conditions Are More Efficient for Enrichment and Diversity of Organisms Containing Cellulase-Encoding Genes than Submerged Cultures
Senta Heiss-Blanquet, Francoise M Fayolle-Guichard, Vincent Lombard, Agnès M Hébert, Pedro M Coutinho, Alexis Groppi, Aurélien Barré, Bernard Henrissat
PLoS ONE 11:497-497 (2016)10.1371/journal.pone.0167216
Increased Gut Redox and Depletion of Anaerobic and Methanogenic Prokaryotes in Severe Acute Malnutrition
Matthieu Million, Maryam Tidjani Alou, Saber Khelaifia, Dipankar Bachar, Jean-Christophe J.-C. Lagier, Niokhor Dione, Souleymane Brah, Perrine Hugon, Vincent Lombard, Fabrice Armougom, Julien Fromonot, Catherine Robert, Caroline Michelle, Aldiouma Diallo, Alexandre Fabre, Régis Guieu, Cheikh Sokhna, Bernard Henrissat, Philippe Parola, Didier Raoult
Scientific Reports 6:26051 (2016)10.1038/srep26051
Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors
Firoz Shah, Cesar Nicolas, Johan Bentzer, Magnus Ellstrom, Mark Smits, Francois Rineau, Bjorn Canback, Dimitrios Floudas, Robert Carleer, Gerald Lackner, Jana Braesel, Dirk Hoffmeister, Bernard Henrissat, Dag Ahren, Tomas Johansson, David S. Hibbett, Francis Martin, Per Persson, Anders Tunlid
New Phytologist 209:1705-1719 (2016)10.1111/nph.13722
Draft Genome Sequence of the Deep-Sea Ascomycetous Filamentous Fungus Cadophora malorum Mo12 from the Mid-Atlantic Ridge Reveals Its Biotechnological Potential
Rédou V, Kumar A, Matthieu Hainaut, Bernard Henrissat, Record E, Barbier G, Burgaud G.
Genome Announcements 4:e00467-16 (2016)10.1128/genomeA.00467-16
Visual comparative omics of fungi for plant biomass deconstruction
Shingo Miyauchi, David Navarro, Igor V. Grigoriev, Anna Lipzen, Robert Riley, Didier Chevret, Sacha Grisel, Jean-Guy Berrin, Bernard Henrissat, Marie-Noëlle Rosso
Frontiers in Microbiology 7:1335 (2016)10.3389/fmicb.2016.01335
Structure-Function Analysis of a Mixed-linkage beta-Glucanase/Xyloglucanase from the Key Ruminal Bacteroidetes Prevotella bryantii B(1)4
Nicholas Mcgregor, Mariya Morar, Thomas Hauch Fenger, Peter Stogios, Nicolas Lenfant, Victor Yin, Xiaohui Xu, Elena Evdokimova, Hong Cui, Bernard Henrissat, Alexei Savchenko, Harry Brumer
Journal of Biological Chemistry 291:1175-1197 (2016)10.1074/jbc.M115.691659
Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles
Markus Schlegel, Martin Munsterktter, Ulrich Guldener, Remy Bruggmann, Angelo Duo, Matthieu Hainaut, Bernard Henrissat, Christian M. K. Sieber, Dirk Hoffmeister, Christoph R. Grunig
BMC Genomics 17:1015 (2016)10.1186/s12864-016-3369-8
Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis
Jordane Despres, Evelyne Forano, Pascale Lepercq, Sophie Comtet-Marre, Grégory Jubelin, Carl J. Yeoman, Margret E. Berg Miller, Christopher J. Fields, Nicolas Terrapon, Carine Le Bourvellec, Catherine M. G. C. Renard, Bernard Henrissat, Bryan A. White, Pascale Mosoni
BMC Genomics 17:147 (2016)10.1186/s12864-016-2472-1
Comparative genomic analysis of Drechmeria coniospora reveals core and specific genetic requirements for fungal endoparisitism of nematodes
Lebrigand K., He L.D., Thakur N., Arguel M.J., Polanowska J., Bernard Henrissat, Record E., Ghislaine Magdelenat, Valérie Barbe, Raffaele S., Barbry P., Ewbank J.J
PLoS Genetics 12 (2016)10.1371/journal.pgen.1006017
The genome of Xylona heveae provides a window into fungal endophytism
Romina Gazis, Alan Kuo, Robert Riley, Kurt Labutti, Anna Lipzen, Junyan Lin, Mojgan Amirebrahimi, Cedar N. Hesse, Joseph W. Spatafora, Bernard Henrissat, Matthieu Hainaut, Igor V. Grigoriev, David S. Hibbett
Fungal Biology 120:26-42 (2016)10.1016/j.funbio.2015.10.002
Draft Genome Sequence of the Deep-Sea Basidiomycetous Yeast Cryptococcus sp. Strain Mo29 Reveals Its Biotechnological Potential.
Rédou V, Kumar A, Hainaut M, Bernard Henrissat, Record E, Barbier G, Burgaud G.
Genome Announcements 4:e00461-16 (2016)10.1128/genomeA.00461-16
Fungal secretomics of ascomycete fungi for biotechnological applications
Marie Couturier, David Navarro, Anne Favel, Mireille Haon, C. Lechat, Laurence Lesage-Meessen, Didier Chevret, Vincent Lombard, Bernard Henrissat, Jean-Guy Berrin
Mycosphere Journal 7:1546-1553 (2016)10.5943/mycosphere/si/3b/6
Genome Assembly of the Fungus Cochliobolus miyabeanus, and Transcriptome Analysis during Early Stages of Infection on American Wildrice (Zizania palustris L.)
Claudia V. Castell-Miller, Juan J. Gutierrez-Gonzalez, Zheng Jin Tu, Kathryn E. Bushley, Matthieu Hainaut, Bernard Henrissat, Deborah A. Samac
PLoS ONE 11:e0154122 (2016)10.1371/journal.pone.0154122
2015
Gut microbiota richness promotes its stability upon increased dietary fibre intake in healthy adults
Julien Tap, Jean-Pierre Furet, Martine Bensaada, Catherine Philippe, Hubert Roth, Sylvie Rabot, Omar Lakhdari, Vincent Lombard, Bernard Henrissat, Gerard Corthier, Eric Fontaine, Joel Dore, Marion Leclerc
Environmental Microbiology 17:4954-4964 (2015)10.1111/1462-2920.13006
Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus
Marie Couturier, David Navarro, Didier Chevret, Bernard Henrissat, François Piumi, Francisco J. Ruiz-Duenas, Angel T. Martinez, Igor V. Grigoriev, Robert Riley, Anna Lipzen, Jean-Guy Berrin, Emma R. Master, Marie-Noelle Rosso
Biotechnology for Biofuels 8 (2015)10.1186/s13068-015-0407-8
De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulis Strain LF580 Unravels Life-Style Traits and Anticancerous Scopularide Biosynthetic Gene Cluster
Abhishek Kumar, Bernard Henrissat, Mikko Arvas, Muhammad Fahad Syed, Nils Thieme, J. Philipp Benz, Jens Laurids Sorensen, Eric Record, Stefanie Poeggeler, Frank Kempken
PLoS ONE 10 (2015)10.1371/journal.pone.0140398
Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides
Meng Wu, Nathan P. Mcnulty, Dmitry A. Rodionov, Matvei S. Khoroshkin, Nicholas W. Griffin, Jiye Cheng, Phil Latreille, Randall A. Kerstetter, Nicolas Terrapon, Bernard Henrissat, Andrei L. Osterman, Jeffrey I. Gordon
Science 350 (2015)10.1126/science.aac5992
A Metagenomic Investigation of the Duodenal Microbiota Reveals Links with Obesity
Emmanouil Angelakis, F. Armougom, Frédéric Carrière, Dipankar Bachar, René Laugier, Jean-Christophe J.-C. Lagier, Catherine Robert, Caroline Michelle, Bernard Henrissat, Didier Raoult
PLoS ONE 10 (2015)10.1371/journal.pone.0137784
Unique Organization of Extracellular Amylases into Amylosomes in the Resistant Starch-Utilizing Human Colonic Firmicutes Bacterium Ruminococcus bromii
Xiaolei Ze, Yonit Ben David, Jenny A. Laverde-Gomez, Bareket Dassa, Paul O. Sheridan, Sylvia H. Duncan, Petra Louis, Bernard Henrissat, Nathalie Juge, Nicole M. Koropatkin, Edward A. Bayer, Harry J. Flint
mBio 6 (2015)10.1128/mBio.01058-15
Functional guild classification predicts the enzymatic role of fungi in litter and soil biogeochemistry
Jennifer M. Talbot, Francis Martin, Annegret Kohler, Bernard Henrissat, Kabir G. Peay
Soil Biology and Biochemistry 88:441-456 (2015)10.1016/j.soilbio.2015.05.006
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat
Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Isberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O'Donovan, Kim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier, Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, Ake Vastermark, Gerrit Vriend
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2015:1-5 (2015)10.1093/database/bav063
Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts
Guillaume Morel, Lieven Sterck, Dominique Swennen, Marina Marcet-Houben, Djamila Onesime, Anthony Levasseur, Noémie Jacques, Sandrine Mallet, Arnaud Couloux, Karine Labadie, Joelle Amselem, Jean-Marie Beckerich, Bernard Henrissat, Yves van de Peer, Patrick Wincker, Jean-Luc Souciet, Toni Gabaldón, Colin R. Tinsley, Serge Casaregola
Scientific Reports 5 (2015)10.1038/srep11571
Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels
Elsa Petit, Maddalena V. Coppi, James C. Hayes, Andrew C. Tolonen, Thomas Warnick, William G. Latouf, Danielle Amisano, Amy Biddle, Supratim Mukherjee, Natalia Ivanova, Athanassios Lykidis, Miriam Land, Loren Hauser, Nikos Kyrpides, Bernard Henrissat, Joanne Lau, Danny J. Schnell, George M. Church, Susan B. Leschine, Jeffrey L. Blanchard
PLoS ONE (2015)10.1371/journal.pone.0118285
Glycan complexity dictates microbial resource allocation in the large intestine
Artur Rogowski, Jonathon A. Briggs, Jennifer C. Mortimer, Theodora Tryfona, Nicolas Terrapon, Elisabeth C. Lowe, Arnaud Basle, Carl Morland, Alison M. Day, Hongjun Zheng, Theresa E. Rogers, Paul Thompson, Alastair R. Hawkins, Madhav P. Yadav, Bernard Henrissat, Eric C. Martens, Paul Dupree, Harry J. Gilbert, David N. Bolam
Nature Communications 6 (2015)10.1038/ncomms8481
Key challenges for the creation and maintenance of specialist protein resources
Gemma L. Holliday, Amos Bairoch, Pantelis G. Bagos, Arnaud Chatonnet, David J. Craik, Robert D. Finn, Bernard Henrissat, David Landsman, Gerard Manning, Nozomi Nagano, Claire O'Donovan, Kim D. Pruitt, Neil D. Rawlings, Milton Saier, Ramanathan Sowdhamini, Michael Spedding, Narayanaswamy Srinivasan, Gert Vriend, Patricia C. Babbitt, Alex Bateman
Proteins - Structure, Function and Bioinformatics 83:1005-1013 (2015)10.1002/prot.24803
Structural basis for carbohydrate binding properties of a plant chitinase-like agglutinin with conserved catalytic machinery
Gerlind Sulzenbacher, Veronique Roig-Zamboni, Willy J. Peumans, Bernard Henrissat, Els J. M. Van Damme, Yves Bourne
Journal of Structural Biology 190:115-121 (2015)10.1016/j.jsb.2015.01.013
Automatic prediction of polysaccharide utilization loci in Bacteroidetes species
Nicolas Terrapon, Vincent Lombard, Harry J. Gilbert, Bernard Henrissat
Bioinformatics 31:647-655 (2015)10.1093/bioinformatics/btu716
Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen
Braham Dhillon, Nicolas Feau, Andrea L. Aerts, Stephanie Beauseigle, Louis Bernier, Alex Copeland, Adam Foster, Navdeep Gill, Bernard Henrissat, Padmini Herath, Kurt M. Labutti, Anthony Levasseur, Erika A. Lindquist, Eline Majoor, Robin A. Ohm, Jasmyn L. Pangilinan, Amadeus Pribowo, John N. Saddler, Monique L. Sakalidis, Ronald P. De Vries, Igor V. Grigoriev, Stephen B. Goodwin, Philippe Tanguay, Richard C. Hamelin
Proceedings of the National Academy of Sciences of the United States of America 112:3451-3456 (2015)10.1073/pnas.1424293112
Insights on the Evolution of Mycoparasitism from the Genome of Clonostachys rosea
Magnus Karlsson, Mikael Brandström Durling, Jaeyoung Choi, Chatchai Kosawang, Gerald Lackner, Georgios D. Tzelepis, Kristiina Nygren, Mukesh K. Dubey, Nathalie Kamou, Anthony Levasseur, Antonio Zapparata, Jinhui Wang, Daniel Buchvaldt Amby, Birgit Jensen, Sabrina Sarrocco, Emmanuel Panteris, Anastasia L. Lagopodi, Stefanie Pöggeler, Giovanni Vannacci, David B. Collinge, Dirk Hoffmeister, Bernard Henrissat, Yong-Hwan Lee, Dan Funck Jensen
Genome Biology and Evolution 7:465-480 (2015)10.1093/gbe/evu292
A glycogene mutation map for discovery of diseases of glycosylation
Lars Hansen, Allan Lind-Thomsen, Hiren J. Joshi, Nis Borbye Pedersen, Christian Theil Have, Yun Kong, Shengjun Wang, Thomas Sparso, Niels Grarup, Malene Bech Vester-Christensen, Katrine Schjoldager, Hudson H. Freeze, Torben Hansen, Oluf Pedersen, Bernard Henrissat, Ulla Mandel, Henrik Clausen, Hans H. Wandall, Eric P. Bennett
Glycobiology 25:211-224 (2015)10.1093/glycob/cwu104
Functional Annotation of the Ophiostoma novo-ulmi Genome: Insights into the Phytopathogenicity of the Fungal Agent of Dutch Elm Disease
André M. Comeau, Josée Dufour, Guillaume F. Bouvet, Volker Jacobi, Martha Nigg, Bernard Henrissat, Jérôme Laroche, Roger C. Levesque, Louis Bernier
Genome Biology and Evolution 7:410-430 (2015)10.1093/gbe/evu281
Deciphering genome content and evolutionary relationships of isolates from the fungus Magnaporthe oryzae attacking different host plants
Helene Chiapello, Ludovic Mallet, Cyprien Guerin, Gabriela Aguileta, Joelle J. Amselem, Thomas Kroj, Enrique Ortega-Abboud, Marc-Henri Lebrun, Bernard Henrissat, Annie Gendrault, François Rodolphe, Didier Tharreau, Elisabeth Fournier
Genome Biology and Evolution 7:2896-2912 (2015)10.1093/gbe/evv187
Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis
Jeanne Dore, Marie Perraud, Cindy Dieryckx, Annegret Kohler, Emmanuelle Morin, Bernard Henrissat, Erika Lindquist, Sabine D. Zimmermann, Vincent Girard, Alan Kuo, Igor V Grigoriev, Francis Martin, Roland Marmeisse, Gilles Gay
New Phytologist 208:1169-1187 (2015)10.1111/nph.13546
Structure and boosting activity of a starch-degrading lytic polysaccharide monooxygenase
Leila Lo Leggio, Thomas J. Simmons, Jens-Christian N. Poulsen, Kristian E. H. Frandsen, Glyn R. Hemsworth, Mary A. Stringer, Pernille Von Freiesleben, Morten Tovborg, Katja S. Johansen, Leonardo de Maria, Paul V. Harris, Chee-Leong Soong, Paul Dupree, Theodora Tryfona, Nicolas Lenfant, Bernard Henrissat, Gideon J. Davies, Paul H. Walton
Nature Communications 6:5961 (2015)10.1038/ncomms6961
Closely related fungi employ diverse enzymatic strategies to degrade plant biomass
Isabelle Benoit, Helena Culleton, Miaomiao Zhou, Marcos Difalco, Guillermo Aguilar‑osorio, Evy Battaglia, Ourdia Bouzid, Carlo P J M Brouwer, Hala B O El‑bushari, Pedro M Coutinho, Birgit S Gruben, Kristiina S Hildén, Jos Houbraken, Luis Alexis Jiménez Barboza, Anthony Levasseur, Eline Majoor, Miia R Mäkelä, Hari‑mander Narang, Blanca Trejo‑aguilar, Joost van den Brink, Patricia A Vankuyk, Ad Wiebenga, Vincent Mckie, Barry Mccleary, Adrian Tsang, Bernard Henrissat, Ronald P de Vries
Biotechnology for Biofuels 8:1-14 (2015)10.1186/s13068-015-0285-0
Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus
Michael H Perlin, Joelle J. Amselem, Eric Fontanillas, Su San Toh, Zehua Chen, Jonathan Goldberg, Sébastien Duplessis, Bernard Henrissat, Sarah Young, Qiandong Zeng, Gabriela Aguileta, Elsa Petit, Helene Badouin, Jared Andrews, Dominique Razeeq, Toni Gabaldón, Hadi Quesneville, Tatiana Giraud, Michael E Hood, David J Schultz, Christina A Cuomo
BMC Genomics 16:np (2015)10.1186/s12864-015-1660-8
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
Annegret Kohler, Alan Kuo, Laszlo G. Nagy, Emmanuelle Morin, Kerrie W. Barry, Francois Buscot, Björn Canbäck, Cindy Choi, Nicolas Cichocki, Alicia Clum, Jan Colpaert, Alex Copeland, Mauricio D. Costa, Jeanne Dore, Dimitrios Floudas, Gilles Gay, Mariangela Girlanda, Bernard Henrissat, Sylvie Herrmann, Jaqueline Hess, Nils Högberg, Tomas Johansson, Hassine-Radhouane Khouja, Kurt Labutti, Urs Lahrmann, Anthony Levasseur, Erika A. Lindquist, Anna Lipzen, Roland Marmeisse, Elena Martino, Claude Murat, Chew Y. Ngan, Uwe Nehls, Jonathan M. Plett, Anne Pringle, Robin A. Ohm, Silvia Perotto, Martina Peter, Robert Riley, François Rineau, Joske Ruytinx, Asaf Salamov, Firoz Shah, Hui Sun, Mika Tarkka, Andrew Tritt, Claire Veneault-Fourrey, Alga Zuccaro, . Mycorrhizal Genomics Initiative Consortium, Anders Tunlid, Igor V. Grigoriev, David S. Hibbett, Francis Martin
Nature Genetics 47:410-U176 (2015)10.1038/ng.3223
The transcriptome of Euglena gracilis reveals unexpected metabolic capabilities for carbohydrate and natural product biochemistry
Ellis C. O'Neill, Martin Trick, Lionel Hill, Martin Rejzek, Renata G. Dusi, Chris J. Hamilton, Paul V. Zimba, Bernard Henrissat, Robert A. Field
Molecular BioSystems 11:2808-2820 (2015)10.1039/c5mb00319a
Structure–function characterization reveals new catalytic diversity in the galactose oxidase and glyoxal oxidase family
Delu (tyler) Yin, Saioa Urresti, Mickael Lafond, Esther M. Johnston, Fatemeh Derikvand, Luisa Ciano, Jean-Guy Berrin, Bernard Henrissat, Paul H. Walton, Gideon J. Davies, Harry Brumer
Nature Communications 6:10197 (2015)10.1038/ncomms10197
2014
Comparative analyses of Podospora anserina secretomes reveal a large array of lignocellulose-active enzymes.
Laetitia Poidevin, Jean-Guy J.-G. Berrin, Chloé Bennati-Granier, Anthony Levasseur, Isabelle Herpoël-Gimbert, Didier Chevret, Pedro M Coutinho, Bernard Henrissat, Senta Heiss-Blanquet, Eric Record
Applied Microbiology and Biotechnology 98:7457-7469 (2014)10.1007/s00253-014-5698-3
Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi
Robert Riley, Asaf A. Salamov, Daren W. Brown, Laszlo G. Nagy, Dimitrios Floudas, Benjamin W. Held, Anthony Levasseur, Vincent Lombard, Emmanuelle Morin, Robert Otillar, Erika A. Lindquist, Hui Sun, Kurt M. Labutti, Jeremy Schmutz, Dina Jabbour, Hong Luo, Scott E. Baker, Antonio G. Pisabarro, Jonathan D. Walton, Robert A. Blanchette, Bernard Henrissat, Francis Martin, Dan Cullen, David S. Hibbett, Igor V. Grigoriev
Proceedings of the National Academy of Sciences of the United States of America 111:9923-9928 (2014)10.1073/pnas.1400592111
First Structural Insights into α-l-Arabinofuranosidases from the Two GH62 Glycoside Hydrolase Subfamilies
Béatrice Siguier, Mireille Haon, Virginie Nahoum, Marlène Marcellin, Odile Burlet-Schiltz, Pedro M Coutinho, Bernard Henrissat, Lionel Mourey, Michael O'Donohue, Jean-Guy J.-G. Berrin, Samuel Tranier, Claire Dumon
Journal of Biological Chemistry 289:5261-5273 (2014)10.1074/jbc.M113.528133
Comparative genomic analysis provides insights into the evolution and niche adaptation of marine Magnetospira sp. QH-2 strain
Boyang Ji, Sheng-Da Zhang, Pascal Arnoux, Zoe Rouy, François Alberto, Nadège Philippe, Dorothée Murat, Wei-Jia Zhang, Jean-Baptiste Rioux, Nicolas Ginet, Monique Sabaty, Sophie Mangenot, Nathalie Pradel, Jiesheng Tian, Jing Yang, Lichen Zhang, Wenyan Zhang, Hongmiao Pan, Bernard Henrissat, Pedro M Coutinho, Ying Li, Tian Xiao, Claudine Médigue, Valérie Barbe, David Pignol, Emmanuel Talla, Long-Fei Wu
Environmental Microbiology 16:525-544 (2014)10.1111/1462-2920.12180
Comparative genomics analysis of Lactobacillus species associated with weight gain or weight protection
Fatima Drissi, Vicky Merhej, Emmanouil Angelakis, Abdessamad El Kaoutari, Frédéric Carrière, Bernard Henrissat, Didier Raoult
Nutrition & Diabetes 4:e109-e109 (2014)10.1038/nutd.2014.6
The carbohydrate-active enzymes database (CAZy) in 2013
Bernard Henrissat, Vincent Lombard, Elodie Drula, Pedro Coutinho, Hemalatha Golaconda Ramulu
Nucleic Acids Research 42:D490-D495 (2014)10.1093/nar/gkt1178
Rumen cellulosomics: divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains
Bareket Dassa, Ilya Borovok, Vered Ruimy-Israeli, Raphael Lamed, Harry J Flint, Sylvia H Duncan, Bernard Henrissat, Pedro Coutinho, Mark Morrison, Pascale Mosoni, Carl J Yeoman, Bryan A White, Edward A Bayer
PLoS ONE 9:e99221 (2014)10.1371/journal.pone.0099221
Fast solubilization of recalcitrant cellulosic biomass by the basidiomycete fungus [i]Laetisaria arvalis[/i] involves successive secretion of oxidative and hydrolytic enzymes
David Navarro, Marie-Noelle Rosso, Mireille Haon, Caroline Olivé, Estelle Bonnin, Laurence Lesage-Meessen, Didier Chevret, Pedro M Couthino, Bernard Henrissat, Jean-Guy Berrin
Biotechnology for Biofuels 7:14 p. (2014)10.1186/s13068-014-0143-5
The genome of the white-rot fungus [i]Pycnoporus cinnabarinus[/i]: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown
Anthony Levasseur, Anne Lomascolo, Olivier Chabrol, Francisco J Ruiz-Dueñas, Eva Boukhris-Uzan, François Piumi, Ursula Kües, Arthur F J Ram, Claude Murat-Furminieux, Mireille Haon, Isabelle Benoit, Yonathan Arfi, Didier Chevret, Elodie Drula, Min Jin Kwon, Philippe Gouret, Laurence Lesage-Meessen, Vincent Lombard, Jérôme J. Mariette, Celine Noirot, Joohae Park, Aleksandrina Patyshakuliyeva, Jean-Claude Sigoillot, Ad Wiebenga, Han a B Wösten, Francis Martin, Pedro M Coutinho, Ronald P de Vries, Angel T Martínez, Christophe Klopp, Pierre Pontarotti, Bernard Henrissat, Eric Record
BMC Genomics 15:486 (2014)10.1186/1471-2164-15-486
Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment
Claire Veneault-Fourrey, Carine Commun, Annegret Kohler, Emmanuelle Morin, Raffaella Balestrini, Jonathan Michael Plett, Etienne Danchin, Pedro Coutinho, Ad Wiebenga, Ronald P de Vries, Bernard Henrissat, Francis Martin
Fungal Genetics and Biology 72:168-181 (2014)10.1016/j.fgb.2014.08.007
2013
Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis
Emilie Tisserant, Mathilde Malbreil, Alan Kuo, Annegret Kohler, Aikaterini Symeonidi, Raffaella Balestrini, Philippe Charron, Nina Duensing, Nicolas Frei Dit Frey, Vivienne Gianinazzi-Pearson, Luz B. Gilbert, Yoshihiro Handa, Joshua R. Herr, Mohamed Hijri, Raman Koul, Masayoshi Kawaguchi, Franziska Krajinski, Peter J. Lammers, Frederic G. Masclaux, Claude Murat, Emmanuelle Morin, Steve Ndikumana, Marco Pagni, Denis Petitpierre, Natalia Requena, Pawel Rosikiewicz, Rohan Riley, Katsuharu Saito, Hélène San Clemente, Harris Shapiro, Diederik van Tuinen, Guillaume Bécard, Paola Bonfante, Uta Paszkowski, Yair Y. Shachar-Hill, Gerald A. Tuskan, J. Peter W. Young, Ian R. Sanders, Bernard Henrissat, Stefan A. Rensing, Igor V. Grigoriev, Nicolas Corradi, Christophe Roux, Francis Martin
Proceedings of the National Academy of Sciences of the United States of America 110:20117-20122 (2013)10.1073/pnas.1313452110
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga
Jean-François Flot, Boris Hespeels, Xiang Li, Benjamin Noel, Irina Arkhipova, Etienne G. J. Danchin, Andreas Hejnol, Bernard Henrissat, Romain Koszul, Jean-Marc Aury, Valerie Barbe, Roxane-Marie Barthelemy, Jens Bast, Martine Da Rocha
Nature 500:453-457 (2013)10.1038/nature12326
Genome of the red alga Porphyridium purpureum
Debashish Bhattacharya, Dana C. Price, Cheong Xin Chan, Huan Qiu, Nicholas Rose, Steven Ball, Andreas P. M. Weber, Maria Cecilia Arias, Bernard Henrissat, Pedro M Coutinho, Anagha Krishnan, Simone Zäuner, Shannon Morath, Frédérique Hilliou, Andrea Egizi, Marie-Mathilde Perrineau, Hwan Su Yoon
Nature Communications 4 (2013)10.1038/ncomms2931
Correction for Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche (vol 109, pg 17501, 2012)
Emmanuelle Morin, Annegret Kohler, Adam R. Baker, Marie Foulongne-Oriol, Julien Lombard, Laszlo G. Nagy, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Annick Brun-Jacob, Andrea L. Aerts, Andrew M. Bailey, Christophe Billette, Pedro M Coutinho, Greg Deakin, Harshavardhan Doddapaneni, Dimitrios Floudas, Jane Grimwood, Kristiina Hildén, Ursula Kües, Kurt M. Labutti, Alla Lapidus, Erika A. Lindquist, Susan M. Lucas, Claude Murat-Furminieux, Robert W. Riley, Asaf A. Salamov, Jeremy Schmutz, Venkataramanan Subramanian, Han A. B. Wösten, Jianping Xu, Daniel C. Eastwood, Gary D. Foster, Anton S. M. Sonnenberg, Dan Cullen, Ronald P. de Vries, Taina Lundell, David S. Hibbett, Bernard Henrissat, Kerry S. Burton, Richard W. Kerrigan, Michael P. Challen, Igor V. Grigoriev, Francis Martin
Proceedings of the National Academy of Sciences of the United States of America 110:4146-4146 (2013)10.1073/pnas.1300201110
Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes
Anthony Levasseur, Elodie Drula, Vincent Lombard, Pedro M Coutinho, Bernard Henrissat
Biotechnology for Biofuels 6:1-14 (2013)10.1186/1754-6834-6-41
Cello-oligosaccharide oxidation reveals differences between two lytic polysaccharide monooxygenases (family GH61) from Podospora anserina
Mathieu Bey, Simeng Zhou, Laetitia Poidevin, Bernard Henrissat, Pedro M Coutinho, Jean-Guy Berrin, Jean-Claude Sigoillot
Applied and Environmental Microbiology 79:488-496 (2013)10.1128/AEM.02942-12
Mining for hemicellulases in the fungus-growing termite Pseudacanthotermes militaris using functional metagenomics
Geraldine Bastien-Uluis, Grégory Arnal, Sophie Bozonnet, Sandrine Laguerre-Gheusi, Fernando Ferreira, Régis Fauré, Bernard Henrissat, Fabrice Lefèvre, Patrick Robe, Olivier Bouchez, Celine Noirot, Claire Dumon, Michael O'Donohue
Biotechnology for Biofuels 6, online:Non paginé (2013)10.1186/1754-6834-6-78
Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus
Aleksandrina Patyshakuliyeva, Edita Jurak, Annegret Kohler, Adam Baker, Evy Battaglia, Wouter de Bruijn, Kerry S. Burton, Michael P. Challen, Pedro M Coutinho, Daniel C. Eastwood, Birgit S. Gruben, Miia R. Makela, Francis Martin, Marina Nadal, Joost van den Brink, Ad Wiebenga, Miaomiao Zhou, Bernard Henrissat, Mirjam Kabel, Harry Gruppen, Ronald P. de Vries
BMC Genomics 14:np (2013)10.1186/1471-2164-14-663
Insights into exo- and endoglucanase activities of family 6 glycoside hydrolases from Podospora anserina
Laetitia Poidevin, Julia Feliu, Annick Doan, Jean-Guy Berrin, Mathieu Bey, Pedro M Coutinho, Bernard Henrissat, Eric Record, Senta Heiss-Blanquet
Applied and Environmental Microbiology 79:4220-4229 (2013)10.1128/AEM.00327-13
Development and Validation of a Microarray for the Investigation of the CAZymes Encoded by the Human Gut Microbiome
Abdessamad El Kaoutari, Fabrice Armougom, Quentin Leroy, Bernard Vialettes, Matthieu Million, Didier Raoult, Bernard Henrissat
PLoS ONE 8:e84033 (2013)10.1371/journal.pone.0084033
Characterization of salt-adapted secreted lignocellulolytic enzymes from the mangrove fungus Pestalotiopsis sp
Yonathan Arfi, Didier Chevret, Bernard Henrissat, Jean-Guy Berrin, Anthony Levasseur, Eric Record
Nature Communications 4:1810 (2013)10.1038/ncomms2850
Role of Glycoside Phosphorylases in Mannose Foraging by Human Gut Bacteria
Simon Ladeveze, Laurence Tarquis, Davide Cecchini, Juliette Bercovici, Isabelle André, Christopher Topham, Sandrine Morel, Elisabeth Laville, Pierre Monsan, Vincent Lombard, Bernard Henrissat, Gabrielle Potocki-Veronese
Journal of Biological Chemistry 288:32370-32383 (2013)10.1074/jbc.M113.483628
Functional metagenomics reveals novel pathways of prebiotic breakdown by human gut bacteria
Davide Cecchini, Elisabeth Laville, Sandrine Laguerre, Patrick Robe, Marion Leclerc, Joel Dore, Bernard Henrissat, Magali Remaud Simeon, Pierre Monsan, Gabrielle Veronese
PLoS ONE 8:np (2013)10.1371/journal.pone.0072766
2012
Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants.
Maria Cecilia Arias, Etienne G J Danchin, Pedro Coutinho, Bernard Henrissat, Steven Ball
Mobile Genetic Elements 2:81-87 (2012)10.4161/mge.20375
Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis
Marie M. Couturier, David D. Navarro, Caroline Olive-Lauge Olive, Didier D. Chevret, Mireille M. Haon, Anne A. Favel, Laurence L. Lesage-Meessen, Bernard Henrissat, Pedro M Coutinho, Jean-Guy J.-G. Berrin
BMC Genomics 13:1-14 (2012)10.1186/1471-2164-13-57
Genome sequence of the model medicinal mushroom Ganoderma lucidum
Shilin Chen, Jiang Xu, Chang Liu, Yingjie Zhu, David R Nelson, Shiguo Zhou, Chunfang Li, Lizhi Wang, Xu Guo, Yongzhen Sun, Hongmei Luo, Ying Li, Jingyuan Song, Bernard Henrissat, Anthony Levasseur, Jun Qian, Jianqin Li, Xiang Luo, Linchun Shi, Liu He, Li Xiang, Xiaolan Xu, Yunyun Niu, Qiushi Li, Mira V Han, Haixia Yan, Jin Zhang, Haimei Chen, Aiping Lv, Zhen Wang, Mingzhu Liu, David C Schwartz, Chao Sun
Nature Communications 3:1-9 (2012)10.1038/ncomms1923
The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry
Pierre J. G. M. de Wit, Ate van Der Burgt, Bilal Okmen, Ioannis Stergiopoulos, Kamel A. Abd-Elsalam, Andrea L. Aerts, Ali H. Bahkali, Henriek G. Beenen, Pranav Chettri, Murray P. Cox, Erwin Datema, Ronald P. de Vries, Braham Dhillon, Austen R. Ganley, Scott A. Griffiths, Yanan Guo, Richard C. Hamelin, Bernard Henrissat, M. Shahjahan Kabir, Mansoor Karimi Jashni, Gert Kema, Sylvia Klaubauf, Alla Lapidus, Anthony Levasseur, Erika Lindquist, Rahim Mehrabi, Robin A. Ohm, Timothy J. Owen, Asaf Salamov, Arne Schwelm, Elio Schijlen, Hui Sun, Harrold A. van den Burg, Roeland C. H. J. van Ham, Shuguang Zhang, Stephen B. Goodwin, Igor V. Grigoriev, Jerome Collemare, Rosie E. Bradshaw
PLoS Genetics 8:np (2012)10.1371/journal.pgen.1003088
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche
Emmanuelle Morin, Annegret Kohler, Adam R. Baker, Marie Foulongne-Oriol, Julien Lombard, Laszlo G. Nagy, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Annick Brun-Jacob, Andrea L. Aerts, Andrew M. Bailey, Christophe Billette, Pedro M Coutinho, Greg Deakin, Harshavardhan Doddapaneni, Dimitrios Floudas, Jane Grimwood, Kristiina Hildén, Ursula Kües, Kurt M. Labutti, Alla Lapidus, Erika A. Lindquist, Susan M. Lucas, Claude Murat-Furminieux, Robert W. Riley, Asaf A. Salamov, Jeremy Schmutz, Venkataramanan Subramanian, Han A. B. Wösten, Jianping Xu, Daniel C. Eastwood, Gary D. Foster, Anton S. M. Sonnenberg, Dan Cullen, Ronald P. de Vries, Taina Lundell, David S. Hibbett, Bernard Henrissat, Kerry S. Burton, Richard W. Kerrigan, Michael P. Challen, Igor V. Grigoriev, Francis Martin
Proceedings of the National Academy of Sciences of the United States of America 109:17501-17506 (2012)10.1073/pnas.1206847109
Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)
Henrik Aspeborg, Pedro M Coutinho, Yang Wang, Harry Brumer, Bernard Henrissat
BMC Evolutionary Biology 12:186 (2012)10.1186/1471-2148-12-186
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses
Richard J O'Connell, Michael R Thon, Stéphane Hacquard, Stefan G Amyotte, Jochem Kleeman, Maria F Torres, Ulrike Damm, Ester A Buiate, Lynn Epstein, Noam Alkan, Janine Altmüller, Lucia Alvarado-Balderrama, Christopher A. Bauser, Christian Becker, Bruce W. Birren, Zehua Chen, Jaeyoung Choi, Jo Aann Crouch, Jonathan P. Duvick, Mark A. Farman, Pamela Gan, David Heiman, Bernard Henrissat, Richard J Howard, Mehdi Kabbage, Christian Koch, Barbara Kracher, Yasuyuki Kubo, Audrey D Law, Marc-Henri Lebrun, Yong-Hwan Lee, Itay Miyara, Neil Moore, Ulla Neumann, Karl Nordström, Daniel G Panaccione, Ralph Panstruga, Michael Place, Robert H Proctor, Dov Prusky, Gabriel Rech, Richard Reinhardt, Jeffrey A Rollings, Steve Rounsley, Christopher L Schardl, David C Schwartz, Narmada Shenoy, Ken Shirasu, Usha R Sikhakolli, Kurt Stüber, Serenella A Sukno, James A Sweigard, Yoshitaka Takano, Hiroyuki Takahara, Frances Trail, Charlotte H van Der Does, Lars M Voll, Isa Will, Sarah Young, Qiandong Zeng, Jingze Zhang, Shiguo Zhou, Martin B Dickman, Paul Schulze-Lefert, Emiel Ver Loren van Themaat, Li-Jun Ma, Lisa J Vaillancourt
Nature Genetics 44:1060-1065 (2012)10.1038/ng.2372
Peptidoglycan: a post-genomic analysis.
Caroline Cayrou, Bernard Henrissat, Philippe Gouret, Pierre Pontarotti, Michel Drancourt
BMC Microbiology 12:294 (2012)10.1186/1471-2180-12-294
The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes
Dimitrios Floudas, Manfred Binder, Robert Riley, Kerrie Barry, Robert A. Blanchette, Bernard Henrissat, Angel T. Martínez, Robert Otillar, Joseph W. Spatafora, Jagjit S. Yadav, Andrea Aerts, Isabelle Benoit, Alex Boyd, Alexis Carlson, Alex Copeland, Pedro M Coutinho, Ronald P. de Vries, Patricia Ferreira, Keisha Findley, Brian Foster, Jill Gaskell, Dylan Glotzer, Pawel Górecki, Joseph Heitman, Cedar Hesse, Chiaki Hori, Kiyohiko Igarashi, Joel A. Jurgens, Nathan Kallen, Phil Kersten, Annegret Kohler, Ursula Kües, T. K. Arun Kumar, Alan Kuo, Kurt Labutti, Luis F. Larrondo, Erika Lindquist, Albee Ling, Vincent Lombard, Susan Lucas, Taina Lundell, Rachael Martin, David J. Mclaughlin, Ingo Morgenstern, Emmanuelle Morin, Claude Murat-Furminieux, Laszlo G. Nagy, Matt Nolan, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Antonis Rokas, Francisco J. Ruiz-Dueñas, Grzegorz Sabat, Asaf Salamov, Masahiro Samejima, Jeremy Schmutz, Jason C. Slot, Franz St. John, Jan Stenlid, Hui Sun, Sheng Sun, Khajamohiddin Syed, Adrian Tsang, Ad Wiebenga, Darcy Young, Antonio Pisabarro, Daniel C. Eastwood, Francis Martin, Dan Cullen, Igor V. Grigoriev, David S. Hibbett
Science 336:1715-1719 (2012)10.1126/science.1221748
Functional analysis of family GH36 α-galactosidases from Ruminococcus gnavus E1: insights into the metabolism of a plant oligosaccharide by a human gut symbiont
M. Cervera-Tison, L. E. Tailford, C. Fuell, L. Bruel, G. Sulzenbacher, Bernard Henrissat, Jean-Guy Berrin, M. Fons, T. Giardina, N. Juge
Applied and Environmental Microbiology 78:7720-7732 (2012)10.1128/AEM.01350-12
Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.
Ake Olson, Andrea Aerts, Fred Asiegbu, Lassaâd Belbahri, Ourdia Bouzid, Anders Broberg, Björn Canbäck, Pedro M Coutinho, Dan Cullen, Kerstin Dalman, Giuliana Deflorio, Linda T A van Diepen, Christophe Dunand, Sébastien Duplessis, Mikael Durling, Paul Gonthier, Jane Grimwood, Carl Gunnar Fossdal, David Hansson, Bernard Henrissat, Ari Hietala, Kajsa Himmelstrand, Dirk Hoffmeister, Nils Högberg, Timothy y James, Magnus Karlsson, Annegret Kohler, Ursula Kues, Yong-Hwan Lee, Yao-Cheng Lin, Mårten Lind, Erika Lindquist, Vincent Lombard, Susan Lucas, Karl Lundén, Emmanuelle Morin, Claude Murat, Jongsun Park, Tommaso Raffaello, Pierre Rouzé, Asaf Salamov, Jeremy Schmutz, Halvor Solheim, Jerry Ståhlberg, Heriberto Vélëz, Ronald P de Vries, Ad Wiebenga, Steve Woodward, Igor Yakovlev, Matteo Garbelotto, Francis Martin, Igor V. Grigoriev, Jan Stenlid
New Phytologist 194:1001-1013 (2012)10.1111/j.1469-8137.2012.04128.x
2011
Mimivirus shows dramatic genome reduction after intraamoebal culture
Mickaël Boyer, Saïd Azza, Lina Barrassi, Thomas Klose, Angélique Campocasso, Isabelle Pagnier, Ghislain Fournous, Audrey Borg, Catherine Robert, Xinzheng Zhang, Christelle Desnues, Bernard Henrissat, Michael Rossmann, Bernard La Scola, Didier Raoult
Proceedings of the National Academy of Sciences of the United States of America 108:10296-10301 (2011)
A novel, noncatalytic carbohydrate-binding module displays specificity for galactose-containing polysaccharides through calcium-mediated oligomerization
Cédric Montanier, Márcia a S Correia, James E Flint, Yanping Zhu, Arnaud Baslé, Lauren S Mckee, José a M Prates, Samuel J Polizzi, Pedro M Coutinho, Richard J Lewis, Bernard Henrissat, Carlos M G A Fontes, Harry J Gilbert
Journal of Biological Chemistry 286:22499-509 (2011)10.1074/jbc.M110.217372
Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.
Christian Kubicek, Alfredo Herrera-Estrella, Verena Seidl-Seiboth, Diego Martinez, Irina Druzhinina, Michael Thon, Susanne Zeilinger, Sergio Casas-Flores, Benjamin Horwitz, Prasun Mukherjee, Mala Mukherjee, László Kredics, Luis Alcaraz, Andrea A. Aerts, Zsuzsanna Antal, Lea Atanasova, Mayte Cervantes-Badillo, Jean Challacombe, Olga Chertkov, Kevin Mccluskey, Fanny Coulpier, Nandan Deshpande, Hans von Döhren, Daniel Ebbole, Edgardo Esquivel-Naranjo, Erzsébet Fekete, Michel Flipphi, Fabian Glaser, Elida Gómez-Rodríguez, Sabine Gruber, Cliff Han, Bernard Henrissat, Rosa Hermosa, Miguel Hernández-Oñate, Levente Karaffa, Idit Kosti, Stéphane Le Crom, Erika Lindquist, Susan Lucas, Mette Lübeck, Peter Lübeck, Antoine Margeot, Benjamin Metz, Monica Misra, Helena Nevalainen, Markus Omann, Nicolle Packer, Giancarlo Perrone, Edith Uresti-Rivera, Asaf Salamov, Monika Schmoll, Bernhard Seiboth, Harris Shapiro, Serenella Sukno, Juan Antonio Tamayo-Ramos, Doris Tisch, Aric Wiest, Heather Wilkinson, Michael Zhang, Pedro Coutinho, Charles Kenerley, Scott Baker, Igor Grigoriev
Genome Biology 12:R40 (2011)10.1186/gb-2011-12-4-r40
The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi
Daniel C. Eastwood, Dimitrios Floudas, Manfred Binder, Andrzej Majcherczyk, Patrick Schneider, Andrea Aerts, Fred O. Asiegbu, Scott E. Baker, Kerrie Barry, Mika Bendiksby, Melanie Blumentritt, Pedro M Coutinho, Dan Cullen, Ronald P. de Vries, Allen Gathman, Barry Goodell, Bernard Henrissat, Katarina Ihrmark, Havard Kauserud, Annegret Kohler, Kurt Labutti, Alla Lapidus, Jose L. Lavin, Yong-Hwan Lee, Erika Lindquist, Walt Lilly, Susan Lucas, Emmanuelle Morin, Claude Murat, Jose A. Oguiza, Jongsun Park, Antonio G. Pisabarro, Robert Riley, Anna Rosling, Asaf Salamov, Olaf Schmidt, Jeremy Schmutz, Inger Skrede, Jan Stenlid, Ad Wiebenga, Xinfeng Xie, Ursula Kuees, David S. Hibbett, Dirk Hoffmeister, Nils Högberg, Francis Martin, Igor V. Grigoriev, Sarah C. Watkinson
Science 333:762-765 (2011)10.1126/science.1205411
Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea
Joelle J. Amselem, Christina A. Cuomo, Jan A. L. van Kan, Muriel Viaud, Ernesto P. Benito, Arnaud Couloux, Pedro M Coutinho, Ronald P. de Vries, Paul S. Dyer, Sabine, Helma Fillinger-David, Elisabeth Fournier, Lilian Gout, Matthias Hahn, Linda Kohn, Nicolas Lapalu, Kim M. Plummer, Jean-Marc Pradier, Emmanuel Quevillon, Amir Sharon, Adeline Simon, Arjen ten Have, Bettina Tudzynski, Paul Tudzynski, Patrick Wincker, Marion Andrew, Véronique Anthouard, Ross E. Beever, Rolland Beffa, Isabelle Benoit, Ourdia Bouzid, Baptiste Brault, Zehua Chen, Mathias Choquer, Jerome Collemare, Pascale Cotton, Etienne Danchin, Corinne da Silva, Angelique Gautier, Corinne Giraud-Delville, Tatiana Giraud, Celedonio Gonzalez, Sandrine Grossetete, Ulrich Gueldener, Bernard Henrissat, Barbara J. Howlett, Chinnappa Kodira, Matthias Kretschmer, Anne Lappartient, Michaela Leroch, Caroline Levis, Evan Mauceli, Cécile Neuvéglise, Birgitt Oeser, Matthew Pearson, Julie Poulain, Nathalie Poussereau, Hadi Quesneville, Christine Rascle, Julia Schumacher, Béatrice Segurens, Adrienne Sexton, Evelyn Silva, Catherine Sirven, Darren M. Soanes, Nicholas J. Talbot, Matt Templeton, Chandri Yandava, Oded Yarden, Qiandong Zeng, Jeffrey A. Rollins, Marc-Henri Lebrun, Marty Dickman
PLoS Genetics 7:np (2011)10.1371/journal.pgen.1002230
Podospora anserina hemicellulases potentiate Trichoderma reesei secretome for the saccharification of lignocellulosic biomass
Marie Couturier, Mireille M. Haon, Pedro M Coutinho, Laurence Lesage-Meessen, Jean-Guy Berrin, Bernard Henrissat
Applied and Environmental Microbiology 77:237-246 (2011)10.1128/AEM.01761-10
The cyst-dividing bacterium Ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment.
Gilles de Luca, mohamed Barakat, Philippe Ortet, Sylvain Fochesato, Cécile Jourlin-Castelli, Mireille Ansaldi, Béatrice Py, Gwennaele Fichant, Pedro M Coutinho, Romé Voulhoux, Olivier Bastien, Eric Maréchal, Bernard Henrissat, Yves Quentin, Philippe Noirot, Alain Filloux, Vincent Méjean, Michael S Dubow, Frédéric Barras, Valérie Barbe, Jean Weissenbach, Irina Mihalcescu, André Verméglio, Wafa Achouak, Thierry Heulin
PLoS ONE 6:e23784 (2011)10.1371/journal.pone.0023784
Obligate biotrophy features unraveled by the genomic analysis of rust fungi
Sébastien Duplessis, Christina A C. A. Cuomo, Yao-Cheng Y.-C. Lin, Andrea Aerts, Emilie Tisserant, Claire Veneault-Fourrey, David L. Joly, Stéphane S. Hacquard, Joelle Amselem, Brandi B. Cantarel, Readman R. Chin, Pedro M Coutinho, Nicolas N. Feau, Matthew M. Field, Pascal Frey, Éric Gelhaye, Jonathan J. Goldberg, Manfred G M. G. Grabherr, Chimappa D C. D. Kodira, Annegret Kohler, Ursula U. Kues, Erika A E. A. Lindquist, Susan S. Lucas, Rohit R. Mago, Evan E. Mauceli, Emmanuelle Morin, Claude C. Murat, Jasmyn J. J. J. Pangilinan, Robert R. Park, Matthew M. Pearson, Hadi H. Quesneville, Nicolas Rouhier, Sharadha Sakthikumar, Asaf A A. A. Salamov, Jeremy J. Schmutz, Benjamin B. Selles, Harris Shapiro, Philippe P. Tanguay, Gerald A G. A. Tuskan, Bernard Henrissat, Yves Y. van de Peer, Pierre P. Rouze, Jeffrey G. J. G. Ellis, Peter N P. N. Dodds, Jacqueline E. J. E. Schein, Shaobin S. Zhong, Richard C R. C. Hamelin, Igor V I. V. Grigoriev, Les J L. J. Szabo, Francis Martin
Proceedings of the National Academy of Sciences of the United States of America 108:9166-9171 (2011)10.1073/pnas.1019315108
Mycobacterium tuberculosis Complex Mycobacteria as Amoeba-Resistant Organisms
Felix Mba Medie, Iskandar Ben Salah, Bernard Henrissat, Didier Raoult, Michel Drancourt
PLoS ONE 6:e20499 (2011)10.1371/journal.pone.0020499
Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen
Scott Diguistini, Ye Wang, Nancy Y. Liao, Greg Taylor, Philippe Tanguay, Nicolas Feau, Bernard Henrissat, Simon K. Chan, Uljana Hesse-Orce, Sepideh Massoumi Alamouti, Clement K. M. Tsui, Roderick T. Docking, Anthony Levasseur, Sajeet Haridas, Gordon Robertson, Inanç Birol, Robert A. Holt, Marco A. Marra, Richard C. Hamelin, Martin Hirst, Steven J.M. Jones, Jörg Bohlmann, Colette Breuil
Proceedings of the National Academy of Sciences of the United States of America 108:2504-2509 (2011)10.1073/pnas.1011289108
2010
A hierarchical classification of polysaccharide lyases for glycogenomics
Vincent Lombard, Thomas Bernard, Corinne Rancurel, Harry Brumer, Pedro M Coutinho, Bernard Henrissat
Biochemical Journal 432:437-444 (2010)10.1042/BJ20101185
Genome sequence of the model mushroom Schizophyllum commune
Robin Ohm, Jan de Jong, Luis Lugones, Andrea Aerts, Erika Kothe, Jason Stajich, Ronald de Vries, Eric Record, Anthony Levasseur, Scott Baker, Kirk Bartholomew, Pedro Coutinho, Susann Erdmann, Thomas Fowler, Allen Gathman, Vincent Lombard, Bernard Henrissat, Nicole Knabe, Ursula Kües, Walt Lilly, Erika Lindquist, Susan Lucas, Jon Magnuson, François Piumi, Marjatta Raudaskoski, Asaf Salamov, Jeremy Schmutz, Francis Schwarze, Patricia Vankuyk, J Stephen Horton, Igor Grigoriev, Han Wösten
Nature Biotechnology 28:957-963 (2010)10.1038/nbt.1643
Structure of a polyisoprenoid binding domain from Saccharophagus degradans implicated in plant cell wall breakdown
Florence Vincent, David Dal Molin, Ronald Weiner, Yves Bourne, Bernard Henrissat
FEBS Letters 584:1577-1584 (2010)10.1016/j.febslet.2010.03.015
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire
C André Lévesque, Henk Brouwer, Liliana Cano, John P Hamilton, Carson Holt, Edgar Huitema, Sylvain Raffaele, Gregg P Robideau, Marco Thines, Joe Win, Marcelo M Zerillo, Gordon W Beakes, Jeffrey L Boore, Dana Busam, Bernard Dumas, Steve Ferriera, Susan I Fuerstenberg, Claire M M Gachon, Elodie Gaulin, Francine Govers, Laura Grenville-Briggs, Neil Horner, Jessica Hostetler, Rays H y Jiang, Justin Johnson, Theerapong Krajaejun, Haining Lin, Harold J G Meijer, Barry Moore, Paul Morris, Vipaporn Phuntmart, Daniela Puiu, Jyoti Shetty, Jason E Stajich, Sucheta Tripathy, Stephan Wawra, Pieter van West, Brett R Whitty, Pedro M Coutinho, Bernard Henrissat, Frank Martin, Paul D Thomas, Brett M Tyler, Ronald P de Vries, Sophien Kamoun, Mark Yandell, Ned Tisserat, C Robin Buell
Genome Biology 11:np (2010)10.1186/gb-2010-11-7-r73
Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes
Etienne Danchin, Marie-Noelle Rosso, Paulo Vieira, Janice de Almeida-Engler, Pedro M Coutinho, Bernard Henrissat, Pierre Abad
Proceedings of the National Academy of Sciences of the United States of America 107:17651-17656 (2010)
A novel α-N-acetylgalactosaminidase family with an NAD+-dependent catalytic mechanism suitable for enzymatic removal of blood group A antigens
Gerlind Sulzenbacher, Qiyong Peter Liu, Eric P Bennett, Steven B Levery, Yves Bourne, Guillaume Ponchel, Henrik Clausen, Bernard Henrissat
Biocatalysis and Biotransformation 28:22-32 (2010)10.3109/10242420903424259
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
Li-Jun Ma, Charlotte van Der Does, Katherine A. Borkovich, Jeffrey J. Coleman, Marie-José Daboussi, Antonio Di Pietro, Marie Dufresne, Michael Freitag, Manfred Grabherr, Bernard Henrissat, Petra M. Houterman, Seogchan Kang, Won-Bo Shim, Charles Woloshuk, Xiaohui Xie, Jin-Rong Xu, John Antoniw, Scott E. Baker, Burton H. Bluhm, Andrew Breakspear, Daren W. Brown, Robert A. E. Butchko, Sinead Chapman, Richard Coulson, Pedro M Coutinho, Etienne Danchin, Andrew Diener, Liane R. Gale, Donald M. Gardiner, Stephen Goff, Kim E. Hammond-Kosack, Karen Hilburn, Aurelie Hua-Van, Wilfried Jonkers, Kemal Kazan, Chinnappa D. Kodira, Michael Koehrsen, Lokesh Kumar, Yong-Hwan Lee, Liande Li, John M. Manners, Diego Miranda-Saavedra, Mala Mukherjee, Gyungsoon Park, Jongsun Park, Sook-Young Park, Robert H. Proctor, Aviv Regev, Carmen Ruiz-Roldan, Divya Sain, Sharadha Sakthikumar, Sean Sykes, David C. Schwartz, B. Gillian Turgeon, Ilan Wapinski, Olen Yoder, Sarah Young, Qiandong Zeng, Shiguo Zhou, James Galagan, Christina A. Cuomo, H. Corby Kistler, Martijn Rep
Nature 464:367-373 (2010)10.1038/nature08850
Signature active site architectures illuminate the molecular basis for ligand specificity in family 35 carbohydrate binding module
Márcia a S Correia, D Wade Abbott, Tracey M Gloster, Vânia O Fernandes, José a M Prates, Cédric Montanier, C. Dumon, Michael P Williamson, Richard B Tunnicliffe, Ziyuan Liu, James E Flint, Gideon J Davies, Bernard Henrissat, Pedro M Coutinho, Carlos M G A Fontes, Harry J Gilbert
Biochemistry 49:6193-6205 (2010)10.1021/bi1006139
Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis
Francis Martin, Annegret Kohler, Claude Murat, Raffaella Balestrini, Pedro M Coutinho, Olivier Jaillon, Barbara Montanini, Emmanuelle Morin, Benjamin Noel, Riccardo Percudani, Betina M Porcel, Andrea Rubini, Antonella Amicucci, Joelle Amselem, Véronique Anthouard, Sergio Arcioni, François Artiguenave, Jean-Marc Aury, Paola Ballario, Angelo Bolchi, Andrea Brenna, Annick Brun, Marc Buée, Brandi Cantarel, Gérard Chevalier, Arnaud Couloux, Corinne da Silva, France Denoeud, Sébastien Duplessis, Stefano Ghignone, Benoît Hilselberger, Mirco Iotti, Benoit Marçais, Antonietta Mello, Michele Miranda, Giovanni Pacioni, Hadi Quesneville, Claudia Riccioni, Roberta Ruotolo, Richard Splivallo, Vilberto Stocchi, Emilie Tisserant, Arturo Roberto Viscomi, Alessandra Zambonelli, Elisa Zampieri, Bernard Henrissat, Marc-Henri Lebrun, Francesco Paolocci, Paola Bonfante, Simone Ottonello, Patrick Wincker
Nature 464:1033-1038 (2010)10.1038/nature08867
Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes
Lena Tasse, Juliette Bercovici, Sandra Pizzut-Serin, Patrick Robe, Julien Tap, Christophe Klopp, Brandi L. Cantarel, Pedro M Coutinho, Bernard Henrissat, Marion Leclerc, Joel Dore, Pierre Monsan, Magali Remaud Simeon, Gabrielle Potocki-Veronese
Genome Research 20:1605-1612 (2010)10.1101/gr.108332.110
2009
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
Alexandra Z Worden, Jae-Hyeok Lee, Thomas Mock, Pierre Rouzé, Melinda P Simmons, Andrea L Aerts, Andrew E Allen, Marie L Cuvelier, Evelyne Derelle, Meredith V Everett, Elodie Foulon, Jane Grimwood, Heidrun Gundlach, Bernard Henrissat, Carolyn Napoli, Sarah M Mcdonald, Micaela S Parker, Stephane Rombauts, Aasf Salamov, Peter von Dassow, Jonathan H Badger, Pedro M Coutinho, Elif Demir, Inna Dubchak, Chelle Gentemann, Wenche Eikrem, Jill E Gready, Uwe John, William Lanier, Erika A Lindquist, Susan Lucas, Klaus F X Mayer, Herve Moreau, Fabrice Not, Robert Otillar, Olivier Panaud, Jasmyn Pangilinan, Ian Paulsen, Benoit Piegu, Aaron Poliakov, Steven Robbens, Jeremy Schmutz, Eve Toulza, Tania Wyss, Alexander Zelensky, Kemin Zhou, E Virginia Armbrust, Debashish Bhattacharya, Ursula W Goodenough, Yves van de Peer, Igor V Grigoriev
Science 324:268-72 (2009)10.1126/science.1167222
Tropheryma whipplei glycosylation in the pathophysiologic profile of Whipple's disease.
Cyrille J Bonhomme, Patricia Renesto, Benoît Desnues, Eric Ghigo, Hubert Lepidi, Patrick Fourquet, Florence Fenollar, Bernard Henrissat, Jean-Louis Mege, Didier Raoult
Journal of Infectious Diseases 199:1043-52 (2009)10.1086/597277
The 2008 update of the Aspergillus nidulans genome annotation: a community effort.
Jennifer Russo Wortman, Jane Mabey Gilsenan, Vinita Joardar, Jennifer Deegan, John Clutterbuck, Mikael R Andersen, David Archer, Mojca Bencina, Gerhard Braus, Pedro Coutinho, Hans von Döhren, John Doonan, Arnold J M Driessen, Pawel Durek, Eduardo Espeso, Erzsébet Fekete, Michel Flipphi, Carlos Garcia Estrada, Steven Geysens, Gustavo Goldman, Piet W J de Groot, Kim Hansen, Steven D Harris, Thorsten Heinekamp, Kerstin Helmstaedt, Bernard Henrissat, Gerald Hofmann, Tim Homan, Tetsuya Horio, Hiroyuki Horiuchi, Steve James, Meriel Jones, Levente Karaffa, Zsolt Karányi, Masashi Kato, Nancy Keller, Diane E Kelly, Jan a K W Kiel, Jung-Mi Kim, Ida J van Der Klei, Frans M Klis, Andriy Kovalchuk, Nada Krasevec, Christian P Kubicek, Bo Liu, Andrew Maccabe, Vera Meyer, Pete Mirabito, Márton Miskei, Magdalena Mos, Jonathan Mullins, David R Nelson, Jens Nielsen, Berl R Oakley, Stephen A Osmani, Tiina Pakula, Andrzej Paszewski, Ian T. Paulsen, Sebastian Pilsyk, István Pócsi, Peter J Punt, Arthur F J Ram, Qinghu Ren, Xavier Robellet, Geoff Robson, Bernhard Seiboth, Piet van Solingen, Thomas Specht, Jibin Sun, Naimeh Taheri-Talesh, Norio Takeshita, Dave Ussery, Patricia A Vankuyk, Hans Visser, Peter J I van de Vondervoort, Ronald P de Vries, Jonathan Walton, Xin Xiang, Yi Xiong, an Ping Zeng, Bernd W Brandt, Michael J Cornell, Cees a M J J van den Hondel, Jacob Visser, Stephen G Oliver, Geoffrey Turner
Fungal Genetics and Biology 46 Suppl 1:S2-13 (2009)10.1016/j.fgb.2008.12.003
The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion
Jeffrey J. Coleman, Steve D. Rounsley, Marianela Rodriguez-Carres, Alan Kuo, Catherine C. Wasmann, Jane Grimwood, Jeremy Schmutz, Masatoki Taga, Gerard J. White, Shiguo Zhou, David C. Schwartz, Michael Freitag, Li-Jun Ma, Etienne Danchin, Bernard Henrissat, Pedro M Coutinho, David R. Nelson, Dave Straney, Carolyn A. Napoli, Bridget M. Barker, Michael Gribskov, Martijn Rep, Scott Kroken, István Molnár, Christopher Rensing, John C. Kennell, Jorge Zamora, Mark L. Farman, Eric U. Selker, Asaf Salamov, Harris Shapiro, Jasmyn Pangilinan, Erika Lindquist, Casey Lamers, Igor V. Grigoriev, David M. Geiser, Sarah F. Covert, Esteban Temporini, Hans D. Vanetten
PLoS Genetics 5:e1000618 (2009)
2008
Glycosyltransferases, glycoside hydrolases: surprise, surprise!
Bernard Henrissat, Gerlind Sulzenbacher, Yves Bourne
Current Opinion in Structural Biology (2008)10.1016/j.sbi.2008.09.003
Glycosyltransferases, glycoside hydrolases: surprise, surprise!
Bernard Henrissat, Gerlind Sulzenbacher, Yves Bourne
Current Opinion in Structural Biology 18:527-533 (2008)10.1016/j.sbi.2008.09.003
Complete Genome Sequence of the Complex Carbohydrate-Degrading Marine Bacterium, Saccharophagus degradans Strain 2-40T
Ronald Weiner, Larry Taylor, Bernard Henrissat, Loren Hauser, Miriam Land, Pedro Coutinho, Corinne Rancurel, Elizabeth Saunders, Atkinson Longmire, Haitao Zhang, Edward Bayer, Harry Gilbert, Frank Larimer, Igor Zhulin, Nathan Ekborg, Raphael Lamed, Paul Richardson, Ilya Borovok, Steven Hutcheson
PLoS Genetics 4:e1000087 (2008)10.1371/journal.pgen.1000087
The genome sequence of the model ascomycete fungus Podospora anserina.
Eric Espagne, Olivier Lespinet, Fabienne Malagnac, Corinne da Silva, Olivier Jaillon, Betina Porcel, Arnaud Couloux, Jean-Marc Aury, Béatrice Ségurens, Julie Poulain, Véronique Anthouard, Sandrine Grossetete, Hamid Khalili, Evelyne Coppin, Michelle Déquard-Chablat, Marguerite Picard, Véronique Contamine, Sylvie Arnaise, Anne Bourdais, Véronique Berteaux-Lecellier, Daniel Gautheret, Ronald de Vries, Evy Battaglia, Pedro Coutinho, Etienne G. J. Danchin, Bernard Henrissat, Riyad Khoury, Annie Sainsard-Chanet, Antoine Boivin, Bérangère Pinan-Lucarré, Carole Sellem, Robert Debuchy, Patrick Wincker, Jean Weissenbach, Philippe Silar
Genome Biology 9:R77 (2008)10.1186/gb-2008-9-5-r77
FOLy: An integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds
Anthony Levasseur, François Piumi, Pedro M Coutinho, Corinne Rancurel, Michèle Asther, Michel Delattre, Bernard Henrissat, Pierre Pontarotti, Marcel M. Asther, Eric Record
Fungal Genetics and Biology 45:638-645 (2008)10.1016/j.fgb.2008.01.004
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita
Pierre Abad, Jerome Gouzy, Jean-Marc Aury, Philippe Castagnone-Sereno, Etienne Danchin, Emeline Deleury, Laetitia Perfus-Barbeoch, Véronique Anthouard, François Artiguenave, Vivian C. Blok, Marie-Cécile Caillaud, Pedro M Coutinho, Corinne da Silva, Francesca de Luca, Florence Deau, Magali Esquibet, Timothée Flutre, Jared V. Goldstone, Noureddine Hamamouch, Tarek Hewezi, Olivier Jaillon, Claire Jubin, Paola Leonetti, Marc Magliano, Tom R. Maier, Gabriel V Markov, Paul Mcveigh, Graziano Pesole, Julie Poulain, Marc Robinson-Rechavi, Erika Sallet, Béatrice Ségurens, Delphine Steinbach, Tom Tytgat, Edgardo Ugarte, Cyril van Ghelder, Pasqua Veronico, Thomas J. Baum, Mark Blaxter, Teresa Bleve-Zacheo, Eric L. Davis, J.J. Ewbank, Bruno Favery, Eric Grenier, Bernard Henrissat, John T. Jones, Vincent Laudet, Aaron G. Maule, Hadi Quesneville, Marie-Noelle Rosso, Thomas Schiex, Geert Smant, Jean Weissenbach, Patrick Wincker
Nature Biotechnology 26:909-915 (2008)10.1038/nbt.1482
Identification of a GH110 Subfamily of ␣1,3-Galactosidases: NOVEL ENZYMES FOR REMOVAL OF THE ␣3GAL XENOTRANSPLANTATION ANTIGEN
Qiyong P Liu, Huaiping Yuan, Eric P Bennett, Steven B Levery, Edward Nudelman, Jean Spence, Greg Pietz, Kristen Saunders, Thayer White, Martin L Olsson, Bernard Henrissat, Gerlind Sulzenbacher, Henrik Clausen
Journal of Biological Chemistry 283:8545-8554 (2008)10.1074/jbc.M709020200
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
F. Martin, A. Aerts, D. Ahrén, A. Brun, E. G. J. Danchin, F. Duchaussoy, J. Gibon, Annegret Kohler, E. Lindquist, V. Pereda, A. Salamov, H. J. Shapiro, J. Wuyts, D. Blaudez, Marc Buée, P. Brokstein, B. Canbäck, D. Cohen, P. E. Courty, P. M. Coutinho, C. Delaruelle, J. C. Detter, Aurélie Deveau, S. Difazio, Sébastien Duplessis, L. Fraissinet-Tachet, E. Lucic, P. Frey-Klett, Claire Veneault-Fourrey, I. Feussner, G. Gay, J. Grimwood, P. J. Hoegger10, P. Jain, S. Kilaru, J. Labbé, Y. C. Lin, V. Legué, F. Le Tacon, R. Marmeisse, D. Melayah, B. Montanini, M. Muratet, U. Nehls, H. Niculita-Hirzel, M. P. Oudot-Le Secq, M. Peter, H. Quesneville, B. Rajashekar, M. Reich, N. Rouhier, J. Schmutz, T. Yin, M. Chalot, Bernard Henrissat, U. Kües, S. Lucas, Y. van de Peer, G. K. Podila, A. Polle, P. J. Pukkila, P. M. Richardson, P. Rouzé, I. R. Sanders, J. E. Stajich, A. Tunlid, G. Tuskan, I. V. Grigoriev
Nature 452:88-93 (2008)10.1038/nature06556
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)
Diego Martínez, Randy Berka, Bernard Henrissat, Markku Saloheimo, Mikko Arvas, Scott Bakker, Jarod Chapman, Olga Chertkov, Pedro Coutinho, Dan Cullen, Etienne Danchin, Igor Grigoriev, Paul Harris, Melissa Jackson, Christian Kubicek, Cliff Han, Isaac Ho, Luis Larrondo, Alfredo Lopez de Leon, Jon Magnuson, Sandy Merino, Monica Misra, Beth Nelson, Nicholas Putman, Barbara Robbertse, Asaf Salamov, Monika Schmoll, Astrid Terry, Nina Thayer, Ann Westerholm-Parvinen, Conrad Schoch, Jian Yao, Ravi Barabote, Mary Anne Nelson, Chris Detter, David Bruce, Cheryl Kuske, Gary Xie, Paul Richardson, Daniel Rokhsar, Susan Lucas, Edward Rubin, Nigel Dunn-Coleman, Michael Ward, Thomas Brettin
Nature Biotechnology 26:553-560 (2008)10.1038/nbt1403
The genome sequence of the model ascomycete fungus Podospora anserina
Eric Espagne, Olivier Lespinet, Fabienne Malagnac, Corinne da Silva, Olivier Jaillon, Betina Porcel, Arnaud Couloux, Jean-Marc Aury, Béatrice Ségurens, Julie Poulain, Véronique Anthouard, Sandrine Grossetete, Hamid Khalili, Evelyne Coppin, Michelle Déquard-Chablat, Marguerite Picard, Véronique Contamine, Sylvie Arnaise, Anne Bourdais, Véronique Berteaux-Lecellier, Daniel Gautheret, Ronald de Vries, Evy Battaglia, Pedro Coutinho, Etienne Gj Danchin, Bernard Henrissat, Riyad El Khoury, Annie Sainsard-Chanet, Antoine Boivin, Bérangère Pinan-Lucarré, Carole Sellem, Robert Debuchy, Patrick Wincker, Jean Weissenbach, Philippe Silar
Genome Biology 9:R77 (2008)10.1186/gb-2008-9-5-r77
2007
Des glycosidases bactériennes pour du sang universel
Gerlind Sulzenbacher, Yves Bourne, Bernard Henrissat
Médecine/Sciences (2007)10.1051/medsci/20072389703
Structural Organization and a Standardized Nomenclature for Plant Endo-1,4- β -Glucanases (Cellulases) of Glycosyl Hydrolase Family 9
Breeanna Urbanowicz, Alan Bennett, Elena del Campillo, Carmen Catalá, Takahisa Hayashi, Bernard Henrissat, Herman Höfte, Simon Mcqueen-Mason, Sara Patterson, Oded Shoseyov, Tuula Teeri, Jocelyn K.C. Rose
Plant Physiology 144:1693-1696 (2007)10.1104/pp.107.102574
Bacterial glycosidases for the production of universal red blood cells
Qiyong P Liu, Gerlind Sulzenbacher, Huaiping Yuan, Eric P Bennett, Greg Pietz, Kristen Saunders, Jean Spence, Edward Nudelman, Steven B Levery, Thayer White, John M Neveu, William S Lane, Yves Bourne, Martin L Olsson, Bernard Henrissat, Henrik Clausen
Nature Biotechnology (2007)10.1038/nbt1298
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
Herman Pel, Johannes de Winde, David Archer, Paul Dyer, Gerald Hofmann, Peter Schaap, Geoffrey Turner, Ronald de Vries, Richard Albang, Kaj Albermann, Mikael Andersen, Jannick Bendtsen, Jacques Benen, Marco van den Berg, Stefaan Breestraat, Mark Caddick, Roland Contreras, Michael Cornell, Pedro Coutinho, Etienne Danchin, Alfons Debets, Peter Dekker, Piet van Dijck, Alard van Dijk, Lubbert Dijkhuizen, Arnold Driessen, Christophe D'Enfert, Steven Geysens, Coenie Goosen, Gert Groot, Piet de Groot, Thomas Guillemette, Bernard Henrissat, Marga Herweijer, Johannes van den Hombergh, Cees van den Hondel, Rene van Der Heijden, Rachel van Der Kaaij, Frans Klis, Harrie Kools, Christian Kubicek, Patricia van Kuyk, Jürgen Lauber, Xin Lu, Marc van den Maarel, Rogier Meulenberg, Hildegard Menke, Martin Mortimer, Jens Nielsen, Stephen Oliver, Maurien Olsthoorn, Karoly Pal, Noël van Peij, Arthur Ram, Ursula Rinas, Johannes Roubos, Cees Sagt, Monika Schmoll, Jibin Sun, David Ussery, János Varga, Wouter Vervecken, Peter van de Vondervoort, Holger Wedler, Han Wösten, An-Ping Zeng, Albert van Ooyen, Jaap Visser, Hein Stam
Nature Biotechnology 25:221-231 (2007)10.1038/nbt1282
2006
Crystal structure of inactivated Thermotoga maritima invertase in complex with the trisaccharide substrate raffinose
Francois Alberto, Emmanuelle Jordi, Bernard Henrissat, Mirjam Czjzek
Biochemical Journal 395:457-462 (2006)10.1042/BJ20051936
Dividing the large glycoside hydrolase family 13 into subfamilies: towards improved functional annotations of alpha-amylase-related proteins
Mark R. Stam, Etienne Danchin, Corinne Rancurel, Pedro M Coutinho, Bernard Henrissat
Protein Engineering, Design and Selection 19:555-562 (2006)10.1093/protein/gzl044
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
Gerald A. Tuskan, Stephen Difazio, Stefan Jansson, Jörg Bohlmann, Igor Grigoriev, Uffe Hellsten, Nicholas Putnam, Steven Ralph, Stephane Rombauts, Asaf Salamov, Jacquie Schein, Lieven Sterck, Andrea Aerts, Rishikesh Bhalerao, Rupali Bhalerao, Damien Blaudez, Wout Boerjan, Annick Brun-Jacob, Amy Brunner, Victor Busov, Malcolm Campbell, John Carlson, Michel M. Chalot, Jarod Chapman, Gwo-Liang Chen, D. Cooper, Pedro Coutinho, Jérémy Couturier, Sarah Covert, Quentin Cronk, R. Cunningham, John Davis, S. Degroeve, Annabelle Dejardin, Claude Depamphilis, John Detter, Bill Dirks, Inna Dubchak, Sébastien Duplessis, Jürgen Ehlting, Brian Ellis, Karla Gendler, David Goodstein, Michael Gribskov, Jane Grimwood, Andrew Groover, Lee Gunter, Britta Hamberger, Berthold Heinze, Ykä Helariutta, Bernard Henrissat, Dawn Holligan, Robert Holt, Wayne Huang, Nurul Islam-Faridi, Steven Jones, Matthew Jones-Rhoades, Richard Jorgensen, Chandrashekha Joshi, Jaakko Kangasjärvi, Jan Karlsson, Colin Kelleher, Robert Kirkpatrick, Matias Kirst, Annegret Kohler, Udaya Kalluri, Frank Larimer, Jim Leebens-Mack, Jean-Charles Leplé, Philip Locascio, Yunian Lou, Susan Lucas, Francis Martin, Barbara Montanini, Carolyn Napoli, David R Nelson, C. Dana Nelson, Kaisa Nieminen, Ove Nilsson, Veronica Pereda, Gary Peter, Ryan Philippe, Gilles G. Pilate, Alexandre Poliakov, Jane Razumovskaya, Paul Richardson, Cécile Rinaldi, Kermit Ritland, Pierre Rouzé, Dmitriy Ryaboy, Jeremy Schmutz, J. Schrader, Bo Segerman, Heesun Shin, Asim Siddiqui, Fredrik Sterky, Astrid Terry, Chung-Jui Tsai, Edward Uberbacher, Per Unneberg, Jorma Vahala, Kerr Wall, Susan Wessler, Guojun Yang, Tongming Yin, Carl Douglas, Marco Marra, Goran Sandberg, Yves van de Peer, Daniel S. Rokhsar
Science 313:1596-1604 (2006)10.1126/science.1128691
2005
VaZyMolO: a tool to define and classify modularity in viral proteins
François Ferron, Corinne Rancurel, Sonia Longhi, Christian Cambillau, Bernard Henrissat, Bruno Canard
Journal of General Virology 86:743-749 (2005)10.1099/vir.0.80590-0
Evolutionary and mechanistic relationships between glycosidases acting on ??- and ??-bonds
Mark Stam, Eric Blanc, Pedro Coutinho, Bernard Henrissat
Carbohydrate Research 340:2728-34 (2005)10.1016/j.carres.2005.09.018
Protein disorder: conformational distribution of the flexible linker in a chimeric double cellulase.
Von Ossowski I, Eaton Jt, M. Czjzek, Perkins Sj, Frandsen Tp, M. Schulein, P. Panine, Bernard Henrissat, V. Receveur-Brechot
Biophysical Journal 88:2823-2832 (2005)
Carbohydrate-Active Enzymes Involved in the Secondary Cell Wall Biogenesis in Hybrid Aspen
Henrik Aspeborg, Jarmo Schrader, Pedro Coutinho, Mark Stam, Åsa Kallas, Soraya Djerbi, Peter Nilsson, Stuart Denman, Bahram Amini, Fredrik Sterky, Emma Master, Göran Sandberg, Ewa Mellerowicz, Björn Sundberg, Bernard Henrissat, Tuula Teeri
Plant Physiology 137:983-97 (2005)10.1104/pp.104.055087
2004
The Three-dimensional Structure of Invertase (β-Fructosidase) from Thermotoga maritima Reveals a Bimodular Arrangement and an Evolutionary Relationship between Retaining and Inverting Glycosidases
Francois Alberto, Christophe Bignon, Gerlind Sulzenbacher, Bernard Henrissat, Mirjam Czjzek
Journal of Biological Chemistry 279:18903-18910 (2004)10.1074/jbc.M313911200
Crystal Structure of Thermotoga maritima ␣-L-Fucosidase INSIGHTS INTO THE CATALYTIC MECHANISM AND THE MOLECULAR BASIS FOR FUCOSIDOSIS
Gerlind Sulzenbacher, Christophe Bignon, Takeshi Nishimura, Chris A Tarling, Stephen G Withers, Bernard Henrissat, Yves Bourne
Journal of Biological Chemistry (2004)10.1074/jbc.M313783200
2003
Identification of the Catalytic Nucleophile of the Family 29 α-L-Fucosidase from Thermotoga maritima through Trapping of a Covalent Glycosyl-Enzyme Intermediate and Mutagenesis
Chris A Tarling, Shouming He, Gerlind Sulzenbacher, Christophe Bignon, Yves Bourne, Bernard Henrissat, Stephen G Withers
Journal of Biological Chemistry (2003)10.1074/jbc.M306610200
Klotho Is a Novel β-Glucuronidase Capable of Hydrolyzing Steroid β-Glucuronides
Osamu Tohyama, Akihiro Imura, Akiko Iwano, Jean-Noël Freund, Bernard Henrissat, Toshihiko Fujimori, Yo-Ichi Nabeshima
Journal of Biological Chemistry 279:9777-9784 (2003)10.1074/jbc.m312392200
Why are there so many carbohydrate-active enzyme-related genes in plants?
Pedro M Coutinho, Mark Stam, Eric Blanc, Bernard Henrissat
Trends in Plant Science 8:563-5 (2003)
2002
Molecular characterization of a cell wall-associated beta(1-3)endoglucanase of Aspergillus fumigatus.
Isabelle Mouyna, Jacqueline Sarfati, P. Recco, Thierry Fontaine, Bernard Henrissat, Jean-Paul Latgé
Medical Mycology 40:455-64 (2002)10.1080/mmy.40.5.455.464
2001
Optimized mixtures of recombinant Humicola insolens cellulases for the biodegradation of crystalline cellulose
C. Boisset, C. Petrequin, H. Chanzy, Bernard Henrissat, M. Schulein
Biotechnology and Bioengineering 339-345 (2001)
2000
Identification of the catalytic residues of the first family of beta(1-3)glucanosyltransferases identified in fungi
Isabelle Mouyna, Michel Monod, Thierry Fontaine, Bernard Henrissat, Barbara Léchenne, Jean-Paul Latge
Biochemical Journal 347:741-747 (2000)10.1042/bj3470741
Crystal structures of human pancreatic alpha-amylase in complex with carbohydrate and proteinaceous inhibitors.
F Nahoum, G Roux, A Anton, P. Rouge, A Puigserver, B Bischoff, Bernard Henrissat, F. Payan
Biochemical Journal 201-8 (2000)10.1042/0264-6021:3460201
Imaging the enzymatic digestion of bacterial cellulose ribbons reveals the endo character of the cellobiohydrolase Cel6A gtom Humicola insolens and its mode of synergy with cellobiohydrolase Cel7A
C. Boisset, C. Fraschini, M. Schulein, Bernard Henrissat, H. Chanzy
Applied and Environmental Microbiology 1444-1452 (2000)
High resolution X-ray crystallography shows that ascorbate is a cofactor for myrosinase and substitutes for the function of the catalytic base
W.P. Burmeister, S. Cottaz, P. Rollin, A. Vasella, Bernard Henrissat
Journal of Biological Chemistry 39385-39393 (2000)
1999
Dynamic light scattering evidence for a lignand-induced motion between the two domains of glucoamylase G1 of Aspergillus niger using heterobivalent substrate analogues
N. Payre, S. Cottaz, C. Boisset, R. Borsali, B. Svensson, Bernard Henrissat, H. Driguez
Angewandte Chemie International Edition 974-977 (1999)
Digestion of crystalline cellulose substrates by the Clostridium thermocellum cellulosomes: structural and morphological aspects
C. Boisset, H. Chanzy, Bernard Henrissat, R. Lamed, Y. Shoham, E. Bayer
Biochemical Journal 829-835 (1999)
Nachweis der Liganden-induzierten Bewegung der beiden Domänen von Glucoamylase G1 aus Aspergillus niger durch dynamische Lichtstreuung unter Verwendung heterobifunktioneller Substratanaloga
N. Payre, C. Boisset, S. Cottaz, R. Borsali, B. Svensson, Bernard Henrissat, H. Driguez
Angew. Chem. 1027-1030 (1999)
1998
A b(1-3) glucanosyltransferase isolated from the cell wall of Aspergillus fumigatus is an homolog of the yeast BGL2
Isabelle Mouyna, Robert P. Hartland, Thierry Fontaine, Michel Diaquin, Catherine Simenel, Muriel Delepierre, Bernard Henrissat, Jean-Paul Latgé
Microbiology 3171-3180 (1998)10.1099/00221287-144-11-3171
The k-carrageenase of the marine bacterium Cytophaga drobachiensis: structural and phylogenetic relationships within family-16 glycoside hydrolases
T. Barbeyron, A. Gerard, P. Potin, Bernard Henrissat, B. Kloareg
Journal of Molecular Evolution 528-537 (1998)
Endogenous cellulases in animals: isolation of β-1,4-endoglucanase genes from two species of plant-parasitic cyst nematodes
G. Smant, J.P. Stokkermans, Y. Yitang, J.M. de Boer, T. Baum, W. Xiaohong, R.S. Jussey, F.J. Gommers, Bernard Henrissat, E.L. Davis, J. Helder, A. Shots, J. Gakker
Proceedings of the National Academy of Sciences of the United States of America 4906-4911 (1998)
A scheme for designating enzymes that hydrolyse the polysaccharides in the cell-walls of plants
Bernard Henrissat, T.T. Teeri, R.A. Warren
FEBS Letters 352-354 (1998)
1997
Structural and sequence-based classification of glycoside hydrolases
Bernard Henrissat, G. Davies
Current Opinion in Structural Biology 637-644 (1997)
Nomenclature for sugar-binding subsites in glycosyl hydrolases
G. Davies, K.S. Wilson, Bernard Henrissat
Biochemical Journal 557-559 (1997)
Deciphering protein sequence information through hydrophobic cluster analysis (HCA): current status and perspectives
I. Callebaut, G. Labesse, P. Durand, A. Poupon, L. Canard, J. Chomilier, Bernard Henrissat, J.P. Mornon
Cellular and Molecular Life Sciences 621-645 (1997)
The crystal structures of Sinapis alba myrosinase and a covalent glycosyl-enzyme intermediate provide insights into the substrate recognition and active-site machinery of an S-glycosidase
W.P. Burmeister, S. Cottaz, H. Driguez, S. Palmieri, R. Ori, Bernard Henrissat
Structure 663-676 (1997)
Evidence that galactanase A from Pseudomonas fluorescens subspecies cellulosa is a retaining family 53 glycosyl hydrolase in which E161 and E270 are the catalytic residues
K.L. Braithwaite, T. Barna, T.D. Spurway, S.J. Charnock, G.W. Black, N. Hughes, J.H. Lakey, R. Virden, G.P. Hazlewood, Bernard Henrissat, H.J. Gilbert
Biochemistry 15489-15507 (1997)
Serratia marcescens chitobiase is a retaining glycosidase utilizing substrate acetamido group participation
S. Drouillard, S. Armand, G.J. Davies, C. Vorgias, Bernard Henrissat
Biochemical Journal 945-949 (1997)
A classification of nucleotide-diphospho-sugar glycosyltransferases based on amino acid sequence similarities
J.A. Campbell, G.J. Davies, V. Bulone, Bernard Henrissat
Biochemical Journal 929-939 (1997)
Parallel-up structure evidences the molecular directionality during biosynthesis of bacterial cellulose
M. Koyama, W. Helbert, T. Imai, J. Sugiyama, Bernard Henrissat
Proceedings of the National Academy of Sciences of the United States of America 9091-9095 (1997)
An ultrastructural study of the interaction of an endoglucanase from Humicola insolens with cotton fibres
C. Boisset, H. Chanzy, M. Schulein, Bernard Henrissat
Cellulose Jul-20 (1997)
A bifunctionalized fluorogenic tetrasaccharide as a substrate to study cellulases
S. Armand, S. Drouillard, M. Schulein, Bernard Henrissat, H. Driguez
Journal of Biological Chemistry 2709-2713 (1997)
Domain evolution in the α-amylase superfamily
S. Janecek, B. Svensson, Bernard Henrissat
Journal of Molecular Evolution 322-331 (1997)
Active-site motifs of lysosomal acid hydrolases: invariant features of clan GH-A of glycosyl hydrolases deduced from hydrophobic cluster analysis
P. Durand, P. Lehn, I. Callebaut, S. Fabrega, Bernard Henrissat, J.P. Mornon
Glycobiology 277-284 (1997)
Identification of candidate active site residues in lysosomal β-hexosaminidase. J. Biol. Chem.
M.J. Fernandes, D. Leclerc, Bernard Henrissat, C.E. Vorgias, R. Gravel, P. Hechtman, F. Kaplan
Journal of Biological Chemistry 814-820 (1997)
1996
Plant chitinase use two different hydrolytic mechanisms
B. Iseli, S. Armand, T. Boller, J.M. Neuhaus, Bernard Henrissat
FEBS Letters 186-188 (1996)
Structure of the Fusarium oxysporum endoglucanase I with a non-hydrolysable substrate analogue: substrate distortion gives rise to the preferred axial orientation for the leaving group
G. Sulzenbacher, H. Driguez, Bernard Henrissat, M. Schulein, G. Davies
Biochemistry 15280-15287 (1996)
Cloning, sequencing and overexpression in Escherichia coli of the alginate lyase-encoding algi gene of Pseudomonas alginivora. Identification of three alginate lyases families
F. Chavagnat, C. Duez, M. Guinand, P. Potin, T. Barbeyron, Bernard Henrissat, J. Wallach, J.M. Ghuysen
Biochemical Journal 575-583 (1996)
A modular family 19 chitinase found in the prokaryotic organism Streptomyces griseus HUT6037
T. Ohno, S. Armand, T. Hata, N. Nikaidou, Bernard Henrissat, M. Mitsutomi, T. Watanabe
Journal of Bacteriology 5065-5070 (1996)
Stereochemical course and reaction products of the action of β-xylosidase form Thermoanaerobacterium saccharolyticum strain B6A-RI
S. Armand, C. Vieille, C. Gey, A. Heyraud, J.G. Zeikus, Bernard Henrissat
European Journal of Biochemistry 706-713 (1996)
Mechanism-based inhibition and stereochemistry of glucosinolate hydrolysis by myrosinase
S. Cottaz, Bernard Henrissat, H. Driguez
Biochemistry 15256-15259 (1996)
Electron microscopic investigation of the diffusion of Bacillus licheniformis α-amylase into corn starch granules
W. Helbert, M. Schulein, Bernard Henrissat
International Journal of Biological Macromolecules 165-169 (1996)
Mannanase A from Pseudomonas fluorescens ssp. cellulosa is a retaining glycosyl hydrolase in which E212 and E320 are the putative catalytic residues
D.N. Bolam, N. Hughes, R. Virden, J.H. Lakey, G.P. Hazlewood, Bernard Henrissat, K.L. Braithwaite, H.J. Gilbert
Biochemistry 16195-16204 (1996)
Towards a classification of glycosyl transferases based on amino acid sequence similarities. Prokaryotic α-mannosyl-transferases
R. Geremia, E. Petroni, L. Ielpi, Bernard Henrissat
Biochemical Journal 133-138 (1996)
Endoglucanase II (EGII) of Penicillium janthinellum: cDNA sequence, heterologous expression and promotor analysis
G. Mernitz, A. Koch, Bernard Henrissat, G. Schultz
Current Genetics 490-195 (1996)
Cloning and characterization of a xylanase gene from corn strains of Erwinia chrysanthemi
N.T. Keen, C. Boyd, Bernard Henrissat
Molecular Plant-Microbe Interactions 651-657 (1996)
Updating the sequence-based classification of glycosyl hydrolases
Bernard Henrissat, A. Bairoch
Biochemical Journal 695-696 (1996)
1995
Structure-based multiple alignment of extracellular pectate lyase sequences
S.E. Heffron, Bernard Henrissat, M.D. Yoder, S.E. Lietzke, F. Jurnak
Molecular Plant-Microbe Interactions 331-334 (1995)
Multidomain architecture of β-glycosyl transferases: implications for mechanism of action
I.M. Saxena, R.M. Brown, M. Fevre, R. Geremia, Bernard Henrissat
Journal of Bacteriology 1419-1424 (1995)
Dynamic light scattering study of the two-domain structure of Humicola insolens endoglucanase V
C. Boisset, R. Borsali, M. Schulein, Bernard Henrissat
FEBS Letters 49-52 (1995)
The crystal structure of methyl β-cellotrioside monohydrate 0.25 ethanolate and its relationship to cellulose II
S. Raymond, Bernard Henrissat, D. Tran Qui, A. Kvick, H. Chanzy
Carbohydrate Research 209-229 (1995)
Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases
Bernard Henrissat, I. Callebaut, S. Fabrega, P. Lehn, J.P. Mornon, G. Davies
Proceedings of the National Academy of Sciences of the United States of America 7090-7094 (1995)
Stereochemistry of chitin hydrolysis by a plant chitinase/lysozyme and x-ray structure of a complex with allosamidin: evidence for substrate assisted catalysis
A.C. Terwisscha van Scheltinga, S. Armand, K.H. Kalk, A. Isogai, Bernard Henrissat, B.W. Dijkstra
Biochemistry 15619-15623 (1995)
Families, superfamilies and subfamilies of glycosyl hydrolases
Bernard Henrissat, A. Romeu
Biochemical Journal 350-351 (1995)
Family A cellulases: two essential tryptophan residues in endoglucanase III from Trichoderma reesei
R. Macarron, Bernard Henrissat, M. Claeyssens
BBA - Biochimica et Biophysica Acta 187-190 (1995)
Structures and mechanisms of glycosyl hydrolases
G. Davies, Bernard Henrissat
Structure 853-859 (1995)
Structure of oligosaccharide-bound forms of the endoglucanase V from Humicola insolens at 1.9 Ang. resolution
G.J. Davies, S.P. Tolley, Bernard Henrissat, C. Hjort, M. Schulein
Biochemistry 16210-16220 (1995)
Docking of congo red to the surface of crystalline cellulose using molecular mechanics
S. Woodcock, Bernard Henrissat, J. Sugiyama
Biopolymers 201-210 (1995)
Functional implications of structure-based sequence alignment of proteins in the extracellular pectate lyase superfamily.
Bernard Henrissat, S.E. Heffron, M.D. Yoder, S.E. Lietzke, F. Jurnak
Plant Physiology 963-976 (1995)
Cloning and characterization of the BgxA gene from Erwinia chrysanthemi D1 which encodes a β-glucosidase/xylosidase enzyme
S. Vroemen, J. Heldens, C. Boyd, Bernard Henrissat, N.T. Keen
Mol. Gen. Genet. 465-477 (1995)
Cloning and expression in Saccharomyces cerevisiae of a Trichoderma reesei β-mannanase gene containing a cellulose binding domain
H. Stalbrand, A. Saloheimo, J. Vehmannpera, Bernard Henrissat, M. Penttila
Applied and Environmental Microbiology 1090-1097 (1995)
Processing and hydrolytic mechanism of cgkA-encoded κ-carrageenase of Alteromonas carrageenovora
P. Potin, C. Richard, T. Barbeyron, Bernard Henrissat, C. Gey, Y. Petillot, E. Forest, O. Dideberg, C. Rochas, B. Kloareg
European Journal of Biochemistry 971-975 (1995)
1994
Stereochemical course of the hydrolysis reaction catalyzed by chitinases A1 and D from Bacillus circulans WL-12
S. Armand, H. Tomita, A. Heyraud, C. Gey, T. Watanabe, Bernard Henrissat
FEBS Letters 177-180 (1994)
A novel, small endoglucanase gene, egl5, from Trichoderma reesei isolated by expression in yeast
A. Saloheimo, Bernard Henrissat, A.M. Hoffren, O. Teleman, M. Penttila
Molecular Microbiology 219-228 (1994)
Evidence for a general role for high affinity non-catalytic cellulose binding domains in microbial plant cell wall hydrolases
S.J. Millward-Sadler, D.M. Poole, Bernard Henrissat, G.P. Hazlewood, H.J. Gilbert
Molecular Microbiology 375-382 (1994)
Reading-frame shift in Saccharomyces glucoamylases restores catalytic base, extends sequence and improves alignment with other glucoamylases
Bernard Henrissat, P.M. Coutinho, P.J. Reilly
Protein Eng. 1281-1282 (1994)
The gene encoding κ-carrageenase of Alteromonas carragenovora is related to β-1,3 1,4-glucanases
T. Barbeyron, Bernard Henrissat, B. Kloareg
Gene 105-109 (1994)
1993
Stereochemistry, specificity and kinetics of the hydrolysis of reduced cellodextrins by nine cellulases
C. Schou, G. Rasmussen, M.B. Kaltoft, Bernard Henrissat, M. Schülein
European Journal of Biochemistry 947-953. (1993)
Identification of an essential glutamate residue in the active site of endoglucanase III from Trichoderma reesei
R. Macarron, J. van Beeumen, Bernard Henrissat, I. de La Mata, M. Claeyssens
FEBS Letters 137-140 (1993)
MANSEK and SUNHCA. Two interactive programs for the hydrophobic cluster analysis of protein sequences
L. Lemesle-Varloot, C. Gaboriaux, Anne Morgat, G. Pantel, J.P. Mornon, S. Lavaitte, F. Lestang, Bernard Henrissat
Bioinformatics 37-44 (1993)
4-thiocello-oligosaccharides: their synthesis and use as inhibitors of cellulases
C. Schou, G. Rasmussen, M. Schulein, Bernard Henrissat, H. Driguez
Carbohydrate Research 743-752 (1993)
Comparison of three algorithms for the assignment of secondary structure in proteins: the advantages of a consensus assignment
N. Colloc'H, C. Etchebest, E. Thoreau, Bernard Henrissat, J.P. Mornon
Protein Eng. 377-382 (1993)
Amino acid sequence similarities between low molecular weight endo-1,4-β-xylanases and family H cellulases revealed by clustering analysis
A. Törrönen, C.P. Kubicek, Bernard Henrissat
FEBS Letters 135-139 (1993)
New families in the classification of glycosyl hydrolases based on amino acid sequence similarities
Bernard Henrissat, A. Bairoch
Biochemical Journal 781-788 (1993)
Hidden domains and active site residues in β-glycanase-encoding gene sequences ?
Bernard Henrissat
Gene 199-204 (1993)
A corrective frameshift in the sequence of the β-glucosidase gene from Cellvibio gilvus restores simularity with a large domain found in other β-glucosidase
Bernard Henrissat
J. Ferment. Bioeng. 240-242 (1993)
Characterization of the active site and thermostability regions of endoxylanase from Termoanaero bacterium saccharolyticum strain B6A-RI
Y.E. Lee, S.E. Lowe, Bernard Henrissat, J.G. Zeikus
Journal of Bacteriology 5890-5898 (1993)
Visualization of the adsoption of a bacterial endo-β-1-4-glucanase and its isolated cellulose-binding domain to crystalline cellulose
N.R. Gilkes, D.G. Kilburn, R.C. Miller, R.A.J. Warren, J. Sugiyama, H. Chanzy, Bernard Henrissat
International Journal of Biological Macromolecules 347-351 (1993)
Characteristics of an exochitinase from Streptomyces olivaceoviridis, its correponding gene putative protein domains and evolutionary relationship to other chitinases
H. Blaak, J. Schellmann, S. Walter, Bernard Henrissat, H. Schrempf
European Journal of Biochemistry 659-669 (1993)
Influenza B virus neuraminidase can synthesize its own inhibitor
W.P. Burmeister, Bernard Henrissat, C. Bosso, S. Cusack, R.W.H. Ruigrok
Structure 19-26 (1993)
1992
Specificity mapping of cellulolytic enzymes: classification into families of structurally related proteins confirmed by biochemical analysis
M. Claeyssens, Bernard Henrissat
Protein Science 1293-1297 (1992)
Nucleotide sequence of the arb genes which control β- glucoside utilization in Erwinia chrysanthemi : comparison with the E. coli bgl operon and evidence for a new β- glucohydrolase family including enzymes from eubacteria, archeabacteria and humans
M. El Hassouni, Bernard Henrissat, M. Chippaux, F. Barras
Journal of Bacteriology 765-777 (1992)
Detection of secondary structure elements in proteins by hydrophobic analysis
S. Woodcock, J.P. Mornon, Bernard Henrissat
Protein Eng. 629-635 (1992)
Stereochemistry of the hydrolysis reaction catalyzed by endoglucanase Z from Erwinia chrysanthemi
F. Barras, I. Bortoli-German, M. Bauzan, J. Rouvier, C. Gey, A. Heyraud, Bernard Henrissat
FEBS Letters 145-148 (1992)
The adsorption of a bacterial cellulase and its two isolated domains to crystalline cellulose
N.R. Gilkes, E. Jervis, Bernard Henrissat, B. Tekant, R.C. Miller, R.A.J. Warren, D.G. Kilburn
Journal of Biological Chemistry 6743-6749 (1992)
1991
Domains in microbial β-1,4-glycanases : sequence conservation, function and enzyme families
N.R. Gilkes, Bernard Henrissat, D.G. Kilburn, R.C. Miller, R.A.J. Warren
Microbiol. Rev. 303-315 (1991)
Structural and functional relationships in two families of β-1,4-glycanases
N.R. Gilkes, M. Claeyssens, R. Aebersold, Bernard Henrissat, A. Meinke, H.D. Morrison, D.G. Kilburn, R.A. Warren, R.C. Miller
European Journal of Biochemistry 367-377 (1991)
A classification of glycosyl hydrolases based on amino acid sequence similarities
Bernard Henrissat
Biochemical Journal 309-316 (1991)
Sequence homology between a β-galactosidase and some β-glucosidases
Bernard Henrissat
Prot. Seq. Data Anal. 61-62 (1991)
1990
CelS : a novel endoglucanase identified from Erwinia carotovora subsp. Carotovora
H.T. Saarilahti, Bernard Henrissat, E.T. Palva
Gene 9-14 (1990)
Weak sequence homologies among chitinases detected by clustering analysis
Bernard Henrissat
Protein Seq. Data Anal. 523-526 (1990)
Hydrophobic cluster analysis : procedures to derive structural and functional information from 2-D-representation of protein sequences
L. Lemesle-Varloot, Bernard Henrissat, C. Gaboriaud, V. Bissery, Anne Morgat, J.P. Mornon
Biochimie 555-574 (1990)
HCABAND : a computer program for the 2D-helical representation of protein sequences
Bernard Henrissat, E. Raimbaud, V. S. Tran, J.P. Mornon
Comput. Appl. Biosci. 3-5 (1990)
Nucleotide sequence of the engXCA gene encoding the major endoglucanase of Xanthomonas campestris pv. campestris
C.L. Gough, J.M. Dow, J. Keen, Bernard Henrissat, M.J. Daniels
Gene 53-59 (1990)
Structural homology among the peroxidase enzyme family revealed by hydrophobic cluster analysis
Bernard Henrissat, M. Saloheimo, S. Lavaitte, J.K.C. Knowles
Proteins - Structure, Function and Bioinformatics 251-257 (1990)
1989
Hydrophobic cluster analysis of the primary sequences of a-amylases
E. Raimbaud, A. Buleon, S. Perez, Bernard Henrissat
International Journal of Biological Macromolecules 217-225 (1989)
Cellulase families revealed by hydrophobic cluster analysis
Bernard Henrissat, M. Claeyssens, P. Tomme, L. Lemesle, J.P. Mornon
Gene 83-95 (1989)
1987
Solid state 13C-NMR and electron microscopy study on the reversible transformation cellulose I →cellulose IIII in Valonia.
H. Chanzy, Bernard Henrissat, M. Vincendon, S.F. Tanner, P.S. Belton
Carbohydrate Research 1-11 (1987)
A solid state 13C-NMR study of the cellulose-I-ethylenediamine complex.
Bernard Henrissat, R.H. Marchessault, M.G. Taylor, H. Chanzy
Polym. Commun. 113-115 (1987)
1986
Structural changes of cellulose crystals during the reversible transformation cellulose I<->III1 in Valonia
H. Chanzy, Bernard Henrissat, R. Vuong, J.F. Revol
Holzforschung 25-30 (1986)
1985
Synergism of cellulases from Trichoderma reesei in the degradation of cellulose.
Bernard Henrissat, H. Driguez, C. Viet, M. Schulein
Bio/technology 722-726 (1985)
Unidirectional degradation of Valonia cellulose microcrystals subjected to cellulase action.
H. Chanzy, Bernard Henrissat
FEBS Letters 285-288 (1985)
Precipitation and crystallization of cellulose doped with dyes.
I. Quenin, Bernard Henrissat
Macromolecular Rapid Communications 737-741 (1985)
1984
Colloidal gold labelling of 1,4-β-D-glucan cellobiohydrolase absorbed on cellulose substrates
H. Chanzy, Bernard Henrissat, R. Vuong
FEBS Letters 193-197 (1984)
1983
Electron microscopy study of the enzymic hydrolysis of Valonia cellulose
H. Chanzy, Bernard Henrissat
Carbohydrate Polymers 161-173 (1983)
The action of 1,4-β-D-glucan cellobiohydrolase on Valonia cellulose microcrystals: an electron microscopic study
H. Chanzy, Bernard Henrissat, R. Vuong, M. Schulein
FEBS Letters 113-118 (1983)
Stereochemistry of the hydrolysis of α,α-trehalose by trehalase using a labelled substrate
J. Defaye, H. Driguez, Bernard Henrissat, E. Bar-Guilloux
Carbohydrate Research 265-273 (1983)
1981
A novel synthesis of 5-thio-D-glucose.
H. Driguez, Bernard Henrissat
Tetrahedron Letters 5061-5062 (1981)
1980
Etude de la spécificité et du mécanisme d'action des tréhalases par utilisation d'analogues de substrat. Dérivés désoxy et deutérié en C-2 symétriques et asymétriques de lα,α-tréhalose.
J. Defaye, H. Driguez, Bernard Henrissat, E. Bar-Guilloux
New Journal of Chemistry 59-68 (1980)
1978
Asymmetric acetylation of α-α-trehalose: synthesis of α-D-galactopyranosyl α-D-glucopyranoside and 6-deoxy-6-fluoro-α-D-galactopyranosyl α-D-glucopyranoside
J. Defaye, H. Driguez, Bernard Henrissat, J. Gelas, E. Bar-Guilloux
Carbohydrate Research 41-49 (1978)
