Our team aims at establishing the relationships between the amino acid sequence of carbohydrate-active enzymes and their precise specificity. This work find developments in various areas, from the exploration of the gut microbiota to the search of novel enzymes for bio-fuel production or blood group conversion.

Cazymes classification within CAZy

Carbohydrates are crucial for most organisms as carbon sources or as signaling molecules, but also for cell wall synthesis, host pathogen interactions, energy storage etc. We term carbohydrate-active enzymes (CAZymes) the enzymes that assemble and breakdown complex carbohydrates and carbohydrate polymers.

Unlike most other classes of enzymes whose sequences carry limited informative power, the peculiarities of CAZymes and of their substrates turn these enzymes into extremely powerful probes to examine and explain the lifestyle of living organisms. During the last 20 years we have developed a classification in sequence-based families that correlate with the structure and catalytic mechanism of CAZymes.

This classification currently includes 5 enzyme categories (glycoside hydrolases, glycosyltransferases, carbohydrate esterases, polysaccharide lyases and auxiliary activities) and their appended carbohydrate-binding modules. To make the classification available to the community, we have created the CAZy database (www.cazy.org), which has been meticulously curated and updated since its first version in 1998. Recently, we have coupled various bioinformatics tools to our database explore the CAZyme content of hundreds of eukaryotic and prokaryotic genomes, as well as many metagenomic datasets.

Domaines de recherche
  • CAZymes
  • eukaryotic and prokaryotic genomes


Past members

  • Francesca Maria Pia Paragliola
  • Nicola Curci
  • Bastian Hornung
  • Aurore Labourel
  • Alexandre Albani
  • Pascal Lapebie
  • Rajender Kumar
  • Matthieu Hainaut
  • Denise Henrissat
  • Nicolas Lenfant
  • Keith Mewis
  • Antony Levasseur
  • Hema Golaconda Ramulu
  • Maria-Cecilia Arias
  • Corinne Rancurel
  • Brandi Cantarel
  • Thomas Bernard
  • Emeline Deleury
  • Etienne Danchin
  • Mark Stam
  • Almudena Aranda-Martinez
  • Javier Romero-Garcia
  • François Alberto
  • Julie Allouch
  • Véronique Receveur-Brechot
  • Takeshi Nishimura


Methionine oxidation of carbohydrate-active enzymes during white-rot wood decay

Lise Molinelli, Elodie Drula, Jean-Charles Gaillard, David Navarro, Jean Armengaud, Jean-Guy Berrin, Thierry Tron, Lionel Tarrago

Applied and Environmental Microbiology (2024)10.1128/aem.01931-23

Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota

Matthew Ostrowski, Sabina Leanti La Rosa, Benoit Kunath, Andrew Robertson, Gabriel Pereira, Live Hagen, Neha Varghese, Ling Qiu, Tianming Yao, Gabrielle Flint, James Li, Sean Mcdonald, Duna Buttner, Nicholas Pudlo, Matthew Schnizlein, Vincent Young, Harry Brumer, Thomas Schmidt, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Bruce Hamaker, Emiley Eloe-Fadrosh, Ashootosh Tripathi, Phillip Pope, Eric Martens

556-569 (2024)10.1038/s41564-022-01093-0

Characterization and structural study of a novel β‐ N ‐acetylgalactosaminidase from Niabella aurantiaca

Eduardo Sebastian Moreno Prieto, Sune Fjermedal, Suzana Siebenhaar, Marlène Vuillemin, Jesper Holck, Renaud Vincentelli, Garry Gippert, Casper Wilkens, Jens Preben Morth, Bernard Henrissat

FEBS Journal (2024)10.1111/febs.17042

Show complete publications list

Team publications

Methionine oxidation of carbohydrate-active enzymes during white-rot wood decay

Lise Molinelli, Elodie Drula, Jean-Charles Gaillard, David Navarro, Jean Armengaud, Jean-Guy Berrin, Thierry Tron, Lionel Tarrago

Applied and Environmental Microbiology (2024)10.1128/aem.01931-23

Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota

Matthew Ostrowski, Sabina Leanti La Rosa, Benoit Kunath, Andrew Robertson, Gabriel Pereira, Live Hagen, Neha Varghese, Ling Qiu, Tianming Yao, Gabrielle Flint, James Li, Sean Mcdonald, Duna Buttner, Nicholas Pudlo, Matthew Schnizlein, Vincent Young, Harry Brumer, Thomas Schmidt, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Bruce Hamaker, Emiley Eloe-Fadrosh, Ashootosh Tripathi, Phillip Pope, Eric Martens

556-569 (2024)10.1038/s41564-022-01093-0

Characterization and structural study of a novel β‐ N ‐acetylgalactosaminidase from Niabella aurantiaca

Eduardo Sebastian Moreno Prieto, Sune Fjermedal, Suzana Siebenhaar, Marlène Vuillemin, Jesper Holck, Renaud Vincentelli, Garry Gippert, Casper Wilkens, Jens Preben Morth, Bernard Henrissat

FEBS Journal (2024)10.1111/febs.17042

Draft genome sequencing and assembly of Favolaschia claudopus CIRM-BRFM 2984 isolated from oak limbs

David Navarro, Elodie Drula, Delphine Chaduli, Robert Cazenave, Steven Ahrendt, Jie Wang, Anna Lipzen, Chris Daum, Kerrie Barry, Igor V Grigoriev, Anne Favel, Marie-Noëlle Rosso, Francis Martin

Journal of Genomics 12:44-46 (2024)10.7150/jgen.92255

Genome sequencing of Porostereum spadiceum to study the degradation of levofloxacin

Amal Ben Ayed, Imen Akrout, Karima Staita, Quentin Albert, Stephane Greff, Charlotte Simmler, Steven Ahrendt, Kurt Labutti, Anna Lipzen, Guifen He, Emily Savage, Jean Armengaud, Mélodie Kielbasa, David Navarro, Elodie Drula, Annick Turbé-Doan, Emmanuel Bertrand, Anne Lomascolo, Delphine Chaduli, Craig Faulds, Mohamed Chamkha, Amina Maalej, Kerrie Barry, Igor Grigoriev, Francis Martin, Héla Zouari-Mechichi, Giuliano Sciara, Tahar Mechichi, Eric Record

Ecotoxicology and Environmental Safety 270:115808 (2024)10.1016/j.ecoenv.2023.115808

Exploring the hemicellulolytic properties and safety of Bacillus paralicheniformis as stepping stone in the use of new fibrolytic beneficial microbes

Serigne Inssa Ngom, Soufiane Maski, Bahia Rached, Taha Chouati, Lydie Oliveira Correia, Catherine Juste, Thierry Meylheuc, Bernard Henrissat, Elmostafa El Fahime, Mohamed Amar, Christel Béra-Maillet

Scientific Reports 13:22785 (2023)10.1038/s41598-023-49724-8

Bioactive glycans in a microbiome-directed food for children with malnutrition

Matthew Hibberd, Daniel Webber, Dmitry Rodionov, Suzanne Henrissat, Robert Chen, Cyrus Zhou, Hannah Lynn, Yi Wang, Hao-Wei Chang, Evan Lee, Janaki Lelwala-Guruge, Marat Kazanov, Aleksandr Arzamasov, Semen Leyn, Vincent Lombard, Nicolas Terrapon, Bernard Henrissat, Juan Castillo, Garret Couture, Nikita Bacalzo, Ye Chen, Carlito Lebrilla, Ishita Mostafa, Subhasish Das, Mustafa Mahfuz, Michael Barratt, Andrei Osterman, Tahmeed Ahmed, Jeffrey Gordon

Nature 625:157-165 (2023)10.1038/s41586-023-06838-3

Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi

Yogesh K Gupta, Francismar C Marcelino-Guimarães, Cécile Lorrain, Andrew Farmer, Sajeet Haridas, Everton Geraldo Capote Ferreira, Valéria S Lopes-Caitar, Liliane Santana Oliveira, Emmanuelle Morin, Stephanie Widdison, Connor Cameron, Yoshihiro Inoue, Kathrin Thor, Kelly Robinson, Elodie Drula, Bernard Henrissat, Kurt Labutti, Aline Mara Rudsit Bini, Eric Paget, Vasanth Singan, Christopher Daum, Cécile Dorme, Milan van Hoek, Antoine Janssen, Lucie Chandat, Yannick Tarriotte, Jake Richardson, Bernardo Do Vale Araújo Melo, Alexander H J Wittenberg, Harrie Schneiders, Stephane Peyrard, Larissa Goulart Zanardo, Valéria Cristina Holtman, Flavie Coulombier-Chauvel, Tobias I Link, Dirk Balmer, André N Müller, Sabine Kind, Stefan Bohnert, Louisa Wirtz, Cindy Chen, Mi Yan, Vivian Ng, Pierrick Gautier, Maurício Conrado Meyer, Ralf Thomas Voegele, Qingli Liu, Igor V Grigoriev, Uwe Conrath, Sérgio H Brommonschenkel, Marco Loehrer, Ulrich Schaffrath, Catherine Sirven, Gabriel Scalliet, Sébastien Duplessis, H. Peter van Esse

Nature Communications 14:1835 (2023)10.1038/s41467-023-37551-4

Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes

Matus Valach, Sandrine Moreira, Celine Petitjean, Corinna Benz, Anzhelika Butenko, Olga Flegontova, Anna Nenarokova, Galina Prokopchuk, Tom Batstone, Pascal Lapébie, Lionnel Lemogo, Matt Sarrasin, Paul Stretenowich, Pragya Tripathi, Euki Yazaki, Takeshi Nara, Bernard Henrissat, B Franz Lang, Michael Gray, Tom Williams, Julius Lukeš, Gertraud Burger

BMC Biology 21:99 (2023)10.1186/s12915-023-01563-9

Stable functional structure despite high taxonomic variability across fungal communities in soils of old-growth montane forests

Qingchao Zeng, Annie Lebreton, Lucas Auer, Xiaowu Man, Liukun Jia, Gengshen Wang, Sai Gong, Vincent Lombard, Marc Buée, Gang Wu, Yucheng Dai, Zhuliang Yang, Francis M Martin

Microbiome 11:217 (2023)10.1186/s40168-023-01650-7

Hadza Prevotella require diet-derived microbiota-accessible carbohydrates to persist in mice

Rebecca Gellman, Matthew Olm, Nicolas Terrapon, Fatima Enam, Steven Higginbottom, Justin Sonnenburg, Erica Sonnenburg

Cell Reports 42:113233 (2023)10.1016/j.celrep.2023.113233

Methionine oxidation of Carbohydrate-Active enZymes during white-rot wood decay

Lise Molinelli, Elodie Drula, Jean-Charles Gaillard, David Navarro, Jean Armengaud, Jean-Guy Berrin, Thierry Tron, Lionel Tarrago


Novel laminarin-binding CBMs in multimodular proteins of marine Bacteroidota feature prominently in phytoplankton blooms

Marie-Katherin Zühlke, Elizabeth Ficko-Blean, Daniel Bartosik, Nicolas Terrapon, Alexandra Jeudy, Murielle Jam, Fengqing Wang, Norma Welsch, Robert Larocque, Diane Jouanneau, Tom Eisenack, François Thomas, Anke Trautwein-Schult, Hanno Teeling, Dörte Becher, Thomas Schweder, Mirjam Czjzek


Inducible CRISPR-targeted “knockdown” of human gut Bacteroides in gnotobiotic mice discloses glycan utilization strategies

Zachary Beller, Darryl Wesener, Timothy Seebeck, Janaki Guruge, Alexandra Byrne, Suzanne Henrissat, Nicolas Terrapon, Bernard Henrissat, Dmitry Rodionov, Andrei Osterman, Chris Suarez, Nikita Bacalzo, Ye Chen, Garret Couture, Carlito Lebrilla, Zhigang Zhang, Erik Eastlund, Caitlin Mccann, Gregory Davis, Jeffrey Gordon

Proceedings of the National Academy of Sciences of the United States of America 120:e2311422120 (2023)10.1073/pnas.2311422120

Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria

Neha Sahu, Boris Indic, Johanna Wong-Bajracharya, Zsolt Merényi, Huei-Mien Ke, Steven Ahrendt, Tori-Lee Monk, Sándor Kocsubé, Elodie Drula, Anna Lipzen, Balázs Bálint, Bernard Henrissat, Bill Andreopoulos, Francis Martin, Christoffer Bugge Harder, Daniel Rigling, Kathryn Ford, Gary Foster, Jasmyn Pangilinan, Alexie Papanicolaou, Kerrie Barry, Kurt Labutti, Máté Virágh, Maxim Koriabine, Mi Yan, Robert Riley, Simang Champramary, Krista Plett, Igor Grigoriev, Isheng Jason Tsai, Jason Slot, György Sipos, Jonathan Plett, László Nagy

Nature Microbiology 8:1668-1681 (2023)10.1038/s41564-023-01448-1

BoGH13ASus from Bacteroides ovatus represents a novel α-amylase used for Bacteroides starch breakdown in the human gut

Haley Brown, Anna Deveaux, Brock Juliano, Amanda Photenhauer, Matthieu Boulinguiez, Russell Bornschein, Zdzislaw Wawrzak, Brandon Ruotolo, Nicolas Terrapon, Nicole Koropatkin

Cellular and Molecular Life Sciences 80:232 (2023)10.1007/s00018-023-04812-w

Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae

Richard Dorrell, Alan Kuo, Zoltan Füssy, Elisabeth Richardson, Asaf Salamov, Nikola Zarevski, Nastasia Freyria, Federico Ibarbalz, Jerry Jenkins, Juan Jose Pierella Karlusich, Andrei Stecca Steindorff, Robyn Edgar, Lori Handley, Kathleen Lail, Anna Lipzen, Vincent Lombard, John Mcfarlane, Charlotte Nef, Anna Mg Novák Vanclová, Yi Peng, Chris Plott, Marianne Potvin, Fabio Rocha Jimenez Vieira, Kerrie Barry, Colomban de Vargas, Bernard Henrissat, Eric Pelletier, Jeremy Schmutz, Patrick Wincker, Joel Dacks, Chris Bowler, Igor Grigoriev, Connie Lovejoy

Life Science Alliance 6:e202201833 (2023)10.26508/lsa.202201833

A global phylogenomic analysis of the shiitake genus Lentinula

Sean Sierra-Patev, Byoungnam Min, Miguel Naranjo-Ortiz, Brian Looney, Zachary Konkel, Jason Slot, Yuichi Sakamoto, Jacob Steenwyk, Antonis Rokas, Juan Carro, Susana Camarero, Patricia Ferreira, Gonzalo Molpeceres, Francisco Ruiz-Dueñas, Ana Serrano, Bernard Henrissat, Elodie Drula, Karen Hughes, Juan Mata, Noemia Kazue Ishikawa, Ruby Vargas-Isla, Shuji Ushijima, Chris Smith, John Donoghue, Steven Ahrendt, William Andreopoulos, Guifen He, Kurt Labutti, Anna Lipzen, Vivian Ng, Robert Riley, Laura Sandor, Kerrie Barry, Angel Martínez, Yang Xiao, John Gibbons, Kazuhisa Terashima, Igor Grigoriev, David Hibbett

Proceedings of the National Academy of Sciences of the United States of America 120:e2214076120 (2023)10.1073/pnas.2214076120

Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus

Jonathan M Plett, Shingo Miyauchi, Emmanuelle Morin, Krista Plett, Johanna Wong-Bajracharya, Maira de Freitas Pereira, Alan Kuo, Bernard Henrissat, Elodie Drula, Dominika Wojtalewicz, Robert Riley, Jasmyn Pangilinan, William Andreopoulos, Kurt Labutti, Chris Daum, Yuko Yoshinaga, Laure Fauchery, Vivian Ng, Anna Lipzen, Kerrie Barry, Vasanth Singan, Jie Guo, Teresa Lebel, Mauricio Dutra Costa, Igor V Grigoriev, Francis Martin, Ian C Anderson, Annegret Kohler

Molecular Biology and Evolution 40:msad045 (2023)10.1093/molbev/msad045

Exogenous zinc mitigates salinity stress by stimulating proline metabolism in proso millet (Panicum miliaceum L.)

Naveed Ul Mushtaq, Khalid Alghamdi, Seerat Saleem, Inayatullah Tahir, Ahmad Bahieldin, Bernard Henrissat, Mohammed Khalid Alghamdi, Reiaz Ul Rehman, Khalid Rehman Hakeem

Frontiers in Plant Science 14:1053869 (2023)10.3389/fpls.2023.1053869

A subfamily classification to choreograph the diverse activities within glycoside hydrolase family 31

Thimali Arumapperuma, Jinling Li, Bastian Hornung, Niccolay Madiedo Soler, Ethan Goddard-Borger, Nicolas Terrapon, Spencer Williams

Journal of Biological Chemistry 299:103038 (2023)10.1016/j.jbc.2023.103038

Conidium Specific Polysaccharides in Aspergillus fumigatus

Zhonghua Liu, Isabel Valsecchi, Rémy A Le Meur, Catherine Simenel, J. Iñaki Guijarro, Catherine Comte, Laetitia Muszkieta, Isabelle Mouyna, Bernard Henrissat, Vishukumar Aimanianda, Jean-Paul Latgé, Thierry Fontaine

Journal of Fungi 9:155 (2023)10.3390/jof9020155

Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides

Lucelia Cabral, Gabriela Persinoti, Douglas Paixão, Marcele Martins, Mariana Morais, Mariana Chinaglia, Mariane Domingues, Mauricio Sforca, Renan Pirolla, Wesley Generoso, Clelton Santos, Lucas Maciel, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Mario Murakami

Nature Communications 13:629 (2022)10.1038/s41467-022-28310-y

Glycoside hydrolase subfamily GH5_57 features a highly redesigned catalytic interface to process complex hetero-β-mannans

Marcele Martins, Mariana Morais, Gabriela Persinoti, Rafael Galinari, Li Yu, Yoshihisa Yoshimi, Fernanda Passos Nunes, Tatiani Lima, Shayla Barbieri, Joana Silveira, Vincent Lombard, Nicolas Terrapon, Paul Dupree, Bernard Henrissat, Mário Murakami

Acta crystallographica Section D : Structural biology [1993-...] 78:1358-1372 (2022)10.1107/S2059798322009561

Diversity of genomic adaptations to the post‐fire environment in Pezizales fungi points to crosstalk between charcoal tolerance and sexual development

Andrei Steindorff, Kyungyong Seong, Akiko Carver, Sara Calhoun, Monika Fischer, Kyra Stillman, Haowen Liu, Elodie Drula, Bernard Henrissat, Hunter Simpson, Jonathan Schilling, Anna Lipzen, Guifen He, Mi Yan, Bill Andreopoulos, Jasmyn Pangilinan, Kurt Labutti, Vivian Ng, Matthew Traxler, Thomas Bruns, Igor Grigoriev

New Phytologist 236:1154-1167 (2022)10.1111/nph.18407

A sufficient condition to design unknown input observers for nonlinear systems with arbitrary relative degree

Pedro Coutinho, Iury Bessa, Wen‐bo Xie, Tran Anh-Tu Nguyen, Reinaldo Martínez Palhares

International Journal of Robust and Nonlinear Control 32:8331-8348 (2022)10.1002/rnc.6273

Exploring the impact of Verticillium wilt disease on the mechanical properties of elementary flax (Linum usitatissimum L.) fibres

Lucile Nuez, Sylvie Durand, Alessia Melelli, Jean-Guy Berrin, Mireille Haon, Elodie Drula, Johnny Beaugrand, Pierre D’arras, Alain Bourmaud, Christophe Baley

Industrial Crops and Products 182:114900 (2022)10.1016/j.indcrop.2022.114900

Microbial liberation of N-methylserotonin from orange fiber in gnotobiotic mice and humans

Nathan Han, Jiye Cheng, Omar Delannoy-Bruno, Daniel Webber, Nicolas Terrapon, Bernard Henrissat, Dmitry Rodionov, Aleksandr Arzamasov, Andrei Osterman, David Hayashi, Alexandra Meynier, Sophie Vinoy, Chandani Desai, Stacey Marion, Michael Barratt, Andrew Heath, Jeffrey Gordon

Cell 185:3056-3057 (2022)10.1016/j.cell.2022.07.007

Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk‐cap ( Lactarius ) mushrooms

Annie Lebreton, Nianwu Tang, Alan Kuo, Kurt Labutti, William Andreopoulos, Elodie Drula, Shingo Miyauchi, Kerrie Barry, Alicia Clum, Anna Lipzen, Daniel Mousain, Vivian Ng, Ran Wang, Yucheng Dai, Bernard Henrissat, Igor Grigoriev, Alexis Guerin-Laguette, Fuqiang Yu, Francis Martin

New Phytologist 235:306-319 (2022)10.1111/nph.18143

The Land–Sea Connection: Insights Into the Plant Lineage from a Green Algal Perspective

Charles Bachy, Fabian Wittmers, Jan Muschiol, Maria Hamilton, Bernard Henrissat, Alexandra Worden

Annual Review of Plant Biology 73 (2022)10.1146/annurev-arplant-071921-100530

Genome evolution of a nonparasitic secondary heterotroph, the diatom Nitzschia putrida

Ryoma Kamikawa, Takako Mochizuki, Mika Sakamoto, Yasuhiro Tanizawa, Takuro Nakayama, Ryo Onuma, Ugo Cenci, Daniel Moog, Samuel Speak, Krisztina Sarkozi, Andrew Toseland, Cock van Oosterhout, Kaori Oyama, Misako Kato, Keitaro Kume, Motoki Kayama, Tomonori Azuma, Ken-Ichiro Ishii, Hideaki Miyashita, Bernard Henrissat, Vincent Lombard, Joe Win, Sophien Kamoun, Yuichiro Kashiyama, Shigeki Mayama, Shin-Ya Miyagishima, Goro Tanifuji, Thomas Mock, Yasukazu Nakamura

Science Advances 8:eabi5075 (2022)10.1126/sciadv.abi5075

Functional exploration of the glycoside hydrolase family GH113

Marie Couturier, Mélanie Touvrey-Loiodice, Nicolas Terrapon, Elodie Drula, Laurine Buon, Christine Chirat, Bernard Henrissat, William Helbert

PLoS ONE 17:1-14 (2022)10.1371/journal.pone.0267509

Generation of a Library of Carbohydrate-Active Enzymes for Plant Biomass Deconstruction

Vânia Cardoso, Joana Brás, Inês Costa, Luís Ferreira, Luís Gama, Renaud Vincentelli, Bernard Henrissat, Carlos Fontes

International Journal of Molecular Sciences 23:4024 (2022)10.3390/ijms23074024

Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi

Brian Looney, Shingo Miyauchi, Emmanuelle Morin, Elodie Drula, Pierre Emmanuel Courty, Annegret Kohler, Alan Kuo, Kurt Labutti, Jasmyn Pangilinan, Anna Lipzen, Robert Riley, William Andreopoulos, Guifen He, Jenifer Johnson, Matt Nolan, Andrew Tritt, Kerrie Barry, Igor Grigoriev, László Nagy, David Hibbett, Bernard Henrissat, P. Brandon Matheny, Jesse Labbé, Francis Martin

New Phytologist 233:2294-2309 (2022)10.1111/nph.17892

Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species

Yi-Fei Sun, Annie Lebreton, Jia-Hui Xing, Yu-Xuan Fang, Jing Si, Emmanuelle Morin, Shingo Miyauchi, Elodie Drula, Steven Ahrendt, Kelly Cobaugh, Anna Lipzen, Maxim Koriabine, Robert Riley, Annegret Kohler, Kerrie Barry, Bernard Henrissat, Igor Grigoriev, Francis Martin, Bao-Kai Cui

Journal of Fungi 8:311 (2022)10.3390/jof8030311

The ectomycorrhizal basidiomycete Laccaria bicolor releases a GH28 polygalacturonase that plays a key role in symbiosis establishment

Feng Zhang, Aurore Labourel, Mireille Haon, Minna Kemppainen, Emilie da Silva Machado, Nicolas Brouilly, Claire Veneault-Fourrey, Annegret Kohler, Marie‐noëlle Rosso, Alejandro Pardo, Bernard Henrissat, Jean‐guy Berrin, Francis Martin

New Phytologist 233:2534-2547 (2022)10.1111/nph.17940

Assembly and synthesis of the extracellular matrix in brown algae

Lisa Mazéas, Rina Yonamine, Tristan Barbeyron, Bernard Henrissat, Elodie Drula, Nicolas Terrapon, Chikako Nagasato, Cécile Hervé

Seminars in Cell and Developmental Biology 134:112-124 (2022)10.1016/j.semcdb.2022.03.005

Phenotypic and Genomic Diversification in Complex Carbohydrate-Degrading Human Gut Bacteria

Nicholas Pudlo, Karthik Urs, Ryan Crawford, Ali Pirani, Todd Atherly, Roberto Jimenez, Nicolas Terrapon, Bernard Henrissat, Daniel Peterson, Cherie Ziemer, Evan Snitkin, Eric Martens

mSystems 7:e0094721 (2022)10.1128/msystems.00947-21

The carbohydrate-active enzyme database: functions and literature

Elodie Drula, Marie-Line Garron, Suzan Dogan, Vincent Lombard, Bernard Henrissat, Nicolas Terrapon

Nucleic Acids Research 50:D571-D577 (2022)10.1093/nar/gkab1045

Genetic determinants of endophytism in the Arabidopsis root mycobiome

Fantin Mesny, Shingo Miyauchi, Thorsten Thiergart, Brigitte Pickel, Lea Atanasova, Magnus Karlsson, Bruno Hüttel, Kerrie Barry, Sajeet Haridas, Cindy Chen, Diane Bauer, William Andreopoulos, Jasmyn Pangilinan, Kurt Labutti, Robert Riley, Anna Lipzen, Alicia Clum, Elodie Drula, Bernard Henrissat, Annegret Kohler, Igor Grigoriev, Francis Martin, Stéphane Hacquard

Nature Communications 12:7227 (2021)10.1038/s41467-021-27479-y

Clinical evidence of the role of Methanobrevibacter smithii in severe acute malnutrition

Aminata Camara, Salimata Konate, Maryam Tidjani Alou, Aly Kodio, Amadou Hamidou Togo, Sebastien Cortaredona, Bernard Henrissat, Mahamadou Ali Thera, Ogobara Doumbo, Didier Raoult, Matthieu Million

Scientific Reports 11 (2021)10.1038/s41598-021-84641-8

Polysaccharide utilization loci-driven enzyme discovery reveals BD-FAE: a bifunctional feruloyl and acetyl xylan esterase active on complex natural xylans

Lisanne Hameleers, Leena Penttinen, Martina Ikonen, Léa Jaillot, Régis Fauré, Nicolas Terrapon, Peter J Deuss, Nina Hakulinen, Emma R Master, Edita Jurak

Biotechnology for Biofuels 14 (2021)10.1186/s13068-021-01976-0

Discovery of fungal oligosaccharide-oxidising flavo-enzymes with previously unknown substrates, redox-activity profiles and interplay with LPMOs

Majid Haddad Momeni, Folmer Fredslund, Bastien Bissaro, Olanrewaju Raji, Thu Vuong, Sebastian Meier, Tine Sofie Nielsen, Vincent Lombard, Bruno Guigliarelli, Frédéric Biaso, Mireille Haon, Sacha Grisel, Bernard Henrissat, Ditte Hededam Welner, Emma Master, Jean-Guy Berrin, Maher Abou Hachem

Nature Communications 12 (2021)10.1038/s41467-021-22372-0

Display of the human mucinome with defined O-glycans by gene engineered cells

Rebecca Nason, Christian Büll, Andriana Konstantinidi, Lingbo Sun, Zilu Ye, Adnan Halim, Wenjuan Du, Daniel Sørensen, Fabien Durbesson, Sanae Furukawa, Ulla Mandel, Hiren Joshi, Leo Alexander Dworkin, Lars Hansen, Leonor David, Tina Iverson, Barbara Bensing, Paul Sullam, Ajit Varki, Erik De Vries, Cornelis de Haan, Renaud Vincentelli, Bernard Henrissat, Sergey Vakhrushev, Henrik Clausen, Yoshiki Narimatsu

Nature Communications 12:4070 (2021)10.1038/s41467-021-24366-4

Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates

Jennifer Brown, Candice Swift, Stephen Mondo, Susanna Seppala, Asaf Salamov, Vasanth Singan, Bernard Henrissat, Elodie Drula, John Henske, Samantha Lee, Kurt Labutti, Guifen He, Mi Yan, Kerrie Barry, Igor Grigoriev, Michelle O'Malley

Biotechnology for Biofuels 14:234 (2021)10.1186/s13068-021-02083-w

Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes

Mario Franco, Jennifer Wisecaver, a Elizabeth Arnold, Yu-Ming Ju, Jason Slot, Steven Ahrendt, Lillian Moore, Katharine Eastman, Kelsey Scott, Zachary Konkel, Stephen Mondo, Alan Kuo, Richard Hayes, Sajeet Haridas, Bill Andreopoulos, Robert Riley, Kurt Labutti, Jasmyn Pangilinan, Anna Lipzen, Mojgan Amirebrahimi, Juying Yan, Catherine Adam, Keykhosrow Keymanesh, Vivian Ng, Katherine Louie, Trent Northen, Elodie Drula, Bernard Henrissat, Huei-Mei Hsieh, Ken Youens-Clark, François Lutzoni, Jolanta Miadlikowska, Daniel Eastwood, Richard Hamelin, Igor Grigoriev, Jana U'Ren, A. Elizabeth Arnold, Yu‐ming Ju, Huei‐mei Hsieh, Ken Youens‐clark, Jana U’ren

New Phytologist (2021)10.1111/nph.17873

Larvae of longhorned beetles (Coleoptera; Cerambycidae) have evolved a diverse and phylogenetically conserved array of plant cell wall degrading enzymes

Na Ra Shin, Seunggwan Shin, Yu Okamura, Roy Kirsch, Vincent Lombard, Petr Svacha, Olivier Denux, Sylvie Augustin, Bernard Henrissat, Duane Mckenna, Yannick Pauchet

Systematic Entomology 46:784-797 (2021)10.1111/syen.12488

Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus

Rachel Koch, Gyeong Mee Yoon, Uma Aryal, Kathleen Lail, Mojgan Amirebrahimi, Kurt Labutti, Anna Lipzen, Robert Riley, Kerrie Barry, Bernard Henrissat, Igor Grigoriev, Joshua Herr, M Catherine Aime, M. Catherine Aime

Current Biology - CB 31:3905-3914.e6 (2021)10.1016/j.cub.2021.06.033

Secreted pectin monooxygenases drive plant infection by pathogenic oomycetes

Bernard Henrissat, Federico Sabbadin, Saioa Urresti, Anna Avrova, Lydia Welsh, Peter Lindley, Michael Csukai, Julie Squires, Paul Walton, Gideon Davies, Neil Bruce, Stephen Whisson, Simon Mcqueen-Mason

Science 373:774-779 (2021)10.1126/science.abj1342

A Putative Lignin Copper Oxidase from Trichoderma reesei

Mariane Daou, Alexandra Bisotto, Mireille Haon, Lydie Oliveira Correia, Betty Cottyn, Elodie Drula, Soňa Garajová, Emmanuel Bertrand, Eric Record, David Navarro, Sana Raouche, Stéphanie Baumberger, Craig B Faulds

Journal of Fungi 7:643 (2021)10.3390/jof7080643

C -type cytochrome-initiated reduction of bacterial lytic polysaccharide monooxygenases

Jessie Branch, Badri Rajagopal, Alessandro Paradisi, Nick Yates, Peter Lindley, Jake Smith, Kristian Hollingsworth, W Bruce Turnbull, Bernard Henrissat, Alison Parkin, Alan Berry, Glyn Hemsworth, W. Bruce Turnbull

Biochemical Journal 478:2927-2944 (2021)10.1042/BCJ20210376

Evaluating microbiome-directed fibre snacks in gnotobiotic mice and humans

Omar Delannoy-Bruno, Chandani Desai, Arjun Raman, Robert Chen, Matthew Hibberd, Jiye Cheng, Nathan Han, Juan Castillo, Garret Couture, Carlito Lebrilla, Ruteja Barve, Vincent Lombard, Bernard Henrissat, Semen Leyn, Dmitry Rodionov, Andrei Osterman, David Hayashi, Alexandra Meynier, Sophie Vinoy, Kyleigh Kirbach, Tara Wilmot, Andrew Heath, Samuel Klein, Michael Barratt, Jeffrey Gordon

Nature 595:91-95 (2021)10.1038/s41586-021-03671-4

Gut microbiome contributions to altered metabolism in a pig model of undernutrition

Hao-Wei Chang, Nathan Mcnulty, Matthew Hibberd, David O'Donnell, Jiye Cheng, Vincent Lombard, Bernard Henrissat, Olga Ilkayeva, Michael Muehlbauer, Christopher Newgard, Michael Barratt, Xi Lin, Jack Odle, Jeffrey Gordon, David O’donnell

Proceedings of the National Academy of Sciences of the United States of America 118:e2024446118 (2021)10.1073/pnas.2024446118

Characterization of three bacterial glycoside hydrolase family 9 endoglucanases with different modular architectures isolated from a compost metagenome

Laure Aymé, Agnès Hébert, Bernard Henrissat, Vincent Lombard, Nathalie Franche, Stéphanie Perret, Etienne Jourdier, Senta Heiss-Blanquet

Biochimica et Biophysica Acta (BBA) - General Subjects 1865:129848 (2021)10.1016/j.bbagen.2021.129848

Genome Features of Asaia sp. W12 Isolated from the Mosquito Anopheles stephensi Reveal Symbiotic Traits

Shicheng Chen, Ting Yu, Nicolas Terrapon, Bernard Henrissat, Edward D Walker

Genes 12:752 (2021)10.3390/genes12050752

Strain-level functional variation in the human gut microbiota based on bacterial binding to artificial food particles

Michael Patnode, Janaki Guruge, Juan Castillo, Garret Couture, Vincent Lombard, Nicolas Terrapon, Bernard Henrissat, Carlito Lebrilla, Jeffrey Gordon

Cell Host & Microbe 29:664-673.e5 (2021)10.1016/j.chom.2021.01.007

Characterization of the β-glucuronidase Pn3Pase as the founding member of glycoside hydrolase family GH169

Paeton Wantuch, Satya Jella, Jeremy Duke, Jarrod Mousa, Bernard Henrissat, John Glushka, Fikri Avci

Glycobiology 31:266-274 (2021)10.1093/glycob/cwaa070

Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay

Hayat Hage, Shingo Miyauchi, Máté Virágh, Elodie Drula, Byoungnam Min, Delphine Chaduli, David Navarro, Anne Favel, Manon Norest, Laurence Lesage‐meessen, Balázs Bálint, Zsolt Merényi, Laura Eugenio, Emmanuelle Morin, Angel T Martínez, Petr Baldrian, Martina Štursová, María Jesús Martínez, Cenek Novotny, Jon K Magnuson, Joey W Spatafora, Sundy Maurice, Jasmyn Pangilinan, Willian Andreopoulos, Kurt Labutti, Hope Hundley, Hyunsoo Na, Alan Kuo, Kerrie Barry, Anna Lipzen, Bernard Henrissat, Robert Riley, Steven Ahrendt, László G Nagy, Igor V Grigoriev, Francis Martin, Marie‐noëlle Rosso

Environmental Microbiology (2021)10.1111/1462-2920.15423

Niche differentiation and evolution of the wood decay machinery in the invasive fungus Serpula lacrymans

Jaqueline Hess, Sudhagar Balasundaram, Renee Bakkemo, Elodie Drula, Bernard Henrissat, Nils Högberg, Daniel Eastwood, Inger Skrede

The International Society of Microbiologial Ecology Journal 15:592-604 (2021)10.1038/s41396-020-00799-5

Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber

Live Hagen, Charles Brooke, Claire Shaw, Angela Norbeck, Hailan Piao, Magnus Ø. Arntzen, Heather E. Olson, Alex Copeland, Nancy Isern, Anil Shukla, Simon Roux, Vincent Lombard, Bernard Henrissat, Michelle O’malley, Igor Grigoriev, Susannah Tringe, Roderick Mackie, Ljiljana Pasa-Tolic, Phillip Pope, Matthias Hess

The International Society of Microbiologial Ecology Journal 15:421-434 (2021)10.1038/s41396-020-00769-x

Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales

Gang Wu, Shingo Miyauchi, Emmanuelle Morin, Alan Kuo, Elodie Drula, Torda Varga, Annegret Kohler, Bang Feng, Yang Cao, Anna Lipzen, Christopher Daum, Hope Hundley, Jasmyn Pangilinan, Jenifer Johnson, Kerrie Barry, Kurt Labutti, Vivian Ng, Steven Ahrendt, Byoungnam Min, In‐geol Choi, Hongjae Park, Jonathan Plett, Jon Magnuson, Joseph Spatafora, László Nagy, Bernard Henrissat, Igor Grigoriev, Zhu‐liang Yang, Jianping Xu, Francis Martin

New Phytologist 10 (2021)10.1111/nph.17858

Lignin from oil palm empty fruit bunches: Characterization, biological activities and application in green synthesis of silver nanoparticles

Luis Alberto Zevallos Torres, Adenise Lorenci Wociciechowski, Valcineide Oliveira de Andrade Tanobe, Arion Zandoná Filho, Rilton Alves de Freitas, Miguel Daniel Noseda, Erico Saito Szameitat, Craig Faulds, Pedro Coutinho, Emanuel Bertrand, Carlos Ricardo Soccol

International Journal of Biological Macromolecules (2021)10.1016/j.ijbiomac.2020.11.104

Multimodularity of a GH10 Xylanase Found in the Termite Gut Metagenome

Haiyang Wu, Eleni Ioannou, Bernard Henrissat, Cédric Montanier, Sophie Bozonnet, Michael O'Donohue, Claire Dumon

Applied and Environmental Microbiology 87 (2021)10.1128/AEM.01714-20

Bioinformatic Analysis of Lytic Polysaccharide Monooxygenases Reveals the Pan-Families Occurrence of Intrinsically Disordered C-Terminal Extensions

Ketty C Tamburrini, Nicolas Terrapon, Vincent Lombard, Bastien Bissaro, Sonia Longhi, Jean-Guy Berrin

Biomolecules 11:1632 (2021)10.3390/biom11111632

Fungal treatment for the valorization of technical soda lignin

Mariane Daou, Clementina Farfan Soto, Amel Majira, Laurent Cézard, Betty Cottyn, Florian Pion, David Navarro, Lydie Oliveira Correia, Elodie Drula, Eric Record, Sana Raouche, Stéphanie Baumberger, Craig B Faulds

Journal of Fungi 7:39 (2021)10.3390/jof7010039

Identification of the molecular determinants driving the substrate specificity of fungal lytic polysaccharide monooxygenases (LPMOs)

Kristian E.H. Frandsen, Kristian Frandsen, Mireille Haon, Sacha Grisel, Bernard Henrissat, Leila Lo Leggio, Jean-Guy Berrin

Journal of Biological Chemistry 296:100086 (2021)10.1074/jbc.RA120.015545

Functional diversity of three tandem C-terminal carbohydrate-binding modules of a β-mannanase

Marie Sofie Møller, Souad El Bouaballati, Bernard Henrissat, Birte Svensson

Journal of Biological Chemistry 296:100638 (2021)10.1016/j.jbc.2021.100638

Identification of Copper-Containing Oxidoreductases in the Secretomes of Three Colletotrichum Species with a Focus on Copper Radical Oxidases for the Biocatalytic Production of Fatty Aldehydes

David Ribeaucourt, Safwan Saker, David Navarro, Bastien Bissaro, Elodie Drula, Lydie Oliveira Correia, Mireille Haon, Sacha Grisel, Nicolas Lapalu, Bernard Henrissat, Richard O'Connell, Fanny Lambert, Mickaël Lafond, Jean-Guy Berrin

Applied and Environmental Microbiology 87:e01526-21 (2021)10.1128/AEM.01526-21

Galactosaminogalactan activates the inflammasome to provide host protection

Benoit Briard, Thierry Fontaine, Parimal Samir, David Place, Laetitia Muszkieta, R. Malireddi, Rajendra Karki, Shelbi Christgen, Perrine Bomme, Peter Vogel, Rémi Beau, Emilia Mellado, Oumaima Ibrahim-Granet, Bernard Henrissat, Ravi Kalathur, Cam Robinson, Jean-Paul Latgé, Thirumala-Devi Kanneganti

Nature 588:688-692 (2020)10.1038/s41586-020-2996-z

A comparative genomics study of 23 Aspergillus species from section Flavi

Inge Kjærbølling, Tammi Vesth, Jens Frisvad, Jane Nybo, Sebastian Theobald, Sara Kildgaard, Thomas Isbrandt Petersen, Alan Kuo, Atsushi Sato, Ellen Lyhne, Martin Kogle, Ad Wiebenga, Roland Kun, Ronnie Lubbers, Miia Mäkelä, Kerrie Barry, Mansi Chovatia, Alicia Clum, Chris Daum, Sajeet Haridas, Guifen He, Kurt Labutti, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Robert Riley, Asaf Salamov, Blake Simmons, Jon Magnuson, Bernard Henrissat, Uffe Mortensen, Thomas Larsen, Ronald de Vries, Igor Grigoriev, Masayuki Machida, Scott Baker, Mikael Andersen

Nature Communications 11 (2020)10.1038/s41467-019-14051-y

Metabolism of multiple glycosaminoglycans by Bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus

Didier Ndeh, Arnaud Baslé, Henrik Strahl, Urszula Mcclurgg, Bernard Henrissat, Nicolas Terrapon, Alan Cartmell

Nature Communications 11 (2020)10.1038/s41467-020-14509-4

Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut

Leszek Michalak, John Christian Gaby, Leidy Lagos, Sabina Leanti La Rosa, Torgeir Hvidsten, Catherine Tétard-Jones, William G T Willats, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Johannes Dröge, Magnus Øverlie Arntzen, Live Heldal Hagen, Margareth Øverland, Phillip Pope, Bjørge Westereng

Nature Communications 11 (2020)10.1038/s41467-020-19585-0

Display of the Human Mucinome With Defined O-Glycans by Gene Engineered Cells

Nason Rebecca, Bull, Christian, Hiren J Joshi, Konstantinidi, Andriana, Renaud Vincentelli, Bernard Henrissat, Vakhrushev, Sergey, Henrik Clausen, Yoshiki Narimatsu

Glycobiology (2020)

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

Shingo Miyauchi, Enikő Kiss, Alan Kuo, Elodie Drula, Annegret Kohler, Marisol Sánchez-García, Emmanuelle Morin, Bill Andreopoulos, Kerrie Barry, Gregory Bonito, Marc Buée, Akiko Carver, Cindy Chen, Nicolas Cichocki, Alicia Clum, David Culley, Pedro Crous, Laure Fauchery, Mariangela Girlanda, Richard Hayes, Zsófia Kéri, Kurt Labutti, Anna Lipzen, Vincent Lombard, Jon Magnuson, François Maillard, Claude C. Murat, Matt Nolan, Robin Ohm, Jasmyn Pangilinan, Maíra de Freitas Pereira, Silvia Perotto, Martina Peter, Stephanie Pfister, Robert Riley, Yaron Sitrit, J. Benjamin Stielow, Gergely Szöllősi, Lucia Žifčáková, Martina Štursová, Joseph Spatafora, Leho Tedersoo, Lu-Min Vaario, Akiyoshi Yamada, Mi Yan, Pengfei Wang, Jianping Xu, Tom Bruns, Petr Baldrian, Rytas Vilgalys, Christophe Dunand, Bernard Henrissat, Igor Grigoriev, David Hibbett, László Nagy, Francis M. Martin

Nature Communications 11 (2020)10.1038/s41467-020-18795-w

Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions

Abbot Oghenekaro, Andriy Kovalchuk, Tommaso Raffaello, Susana Camarero, Markus Gressler, Bernard Henrissat, Juna Lee, Mengxia Liu, Angel Martínez, Otto Miettinen, Sirma Mihaltcheva, Jasmyn Pangilinan, Fei Ren, Robert Riley, Francisco Javier Ruiz-Dueñas, Ana Serrano, Michael Thon, Zilan Wen, Zhen Zeng, Kerrie Barry, Igor Grigoriev, Francis Martin, Fred Asiegbu

Scientific Reports 10 (2020)10.1038/s41598-020-62150-4

α-Galactosidase and Sucrose-Kinase Relationships in a Bi-functional AgaSK Enzyme Produced by the Human Gut Symbiont Ruminococcus gnavus E1

Mickael Lafond, Alexandra Tauzin, Laetitia Bruel, Elisabeth Laville, Vincent Lombard, Jérémy Esque, Isabelle André, Nicolas Vidal, Frédérique Pompeo, Nathalie Quinson, Josette Perrier, Michel Fons, Gabrielle Potocki-Veronese, Thierry Giardina

Frontiers in Microbiology 11 (2020)10.3389/fmicb.2020.579521

Characterization of the CAZy Repertoire from the Marine-Derived Fungus Stemphylium lucomagnoense in Relation to Saline Conditions

Wissal Ben Ali, David Navarro, Abhishek Kumar, Elodie Drula, Annick Turbé-Doan, Lydie Oliveira Correia, Stéphanie Baumberger, Emmanuel Bertrand, Craig Faulds, Bernard Henrissat, Giuliano Sciara, Tahar Mechichi, Eric Record

Marine drugs 18:1-21 (2020)10.3390/md18090461

Utilization of Galectins by Pathogens for Infection

Diyoly Ayona, Pierre-Edouard Fournier, Bernard Henrissat, Benoit Desnues

Frontiers in Immunology 11 (2020)10.3389/fimmu.2020.01877

Constrained Output-Feedback Control for Discrete-Time Fuzzy Systems With Local Nonlinear Models Subject to State and Input Constraints

Tran Anh-Tu Nguyen, Pedro Coutinho, Thierry-Marie Guerra, Reinaldo Martinez Palhares, Jun-Tao Pan

IEEE Transactions on Cybernetics 51:4673-4684 (2020)10.1109/TCYB.2020.3009128

A mutation map for human glycoside hydrolase genes

Lars Hansen, Diab Husein, Birthe Gericke, Torben Hansen, Oluf Pedersen, Mitali Tambe, Hudson Freeze, Hassan Naim, Bernard Henrissat, Hans Wandall, Henrik Clausen, Eric Bennett

Glycobiology 30:500-515 (2020)10.1093/glycob/cwaa010

Isolation and Characterization of Extracellular Vesicles Secreted In Vitro by Porcine Microbiota

Leidy Lagos, Sabina Leanti La Rosa, Magnus Ø. Arntzen, Ragnhild Ånestad, Nicolas Terrapon, John Christian Gaby, Bjørge Westereng

Microorganisms 8:983 (2020)10.3390/microorganisms8070983

Densité de nids de Myrmica en tourbière : exemple de la tourbière de Jouvion (Puy-de-Dôme)

Luc Belenguier, Marine Kreder², Vincent Lombard, Mathilde Poussin, Christophe Galkovsky

BIOM - Revue scientifique pour la biodiversité du Massif central 1:35-48 (2020)10.18145/biom.v1i1.255

Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus

Shingo Miyauchi, Hayat Hage, Elodie Drula, Laurence Lesage-Meessen, Jean-Guy Berrin, David Navarro, Anne Favel, Delphine Chaduli, Sacha Grisel, Mireille Haon, François Piumi, Anthony Levasseur, Anne Lomascolo, Steven Ahrendt, Kerrie Barry, Kurt Labutti, Didier Chevret, Chris Daum, Jérôme J. Mariette, Christophe C. Klopp, Daniel Cullen, Ronald de Vries, Allen Gathman, Matthieu Hainaut, Bernard Henrissat, Kristiina Hildén, Ursula Kues, Walt Lilly, Anna Lipzen, Miia Mäkelä, Angel Martinez, Melanie Morel-Rouhier, Emmanuelle Morin, Jasmyn Pangilinan, Arthur Ram, Han Wösten, Francisco Ruiz-Dueñas, Robert Riley, Eric Record, Igor Grigoriev, Marie-Noelle Rosso

DNA Research (2020)10.1093/dnares/dsaa011

101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens

S. Haridas, R. Albert, M. Binder, J. Bloem, K. Labutti, A. Salamov, B. Andreopoulos, S.E. Baker, K. Barry, G. Bills, B.H. Bluhm, C. Cannon, R. Castanera, D.E. Culley, C. Daum, D. Ezra, J.B. González, Bernard Henrissat, A. Kuo, C. Liang, A. Lipzen, F. Lutzoni, J. Magnuson, S.J. Mondo, M. Nolan, R.A. Ohm, J. Pangilinan, H.-J. Park, L. Ramírez, M. Alfaro, H. Sun, A. Tritt, Y. Yoshinaga, L.-H. Zwiers, B.G. Turgeon, S.B. Goodwin, J.W. Spatafora, P.W. Crous, I.V. Grigoriev

Studies in Mycology 96:141-153 (2020)10.1016/j.simyco.2020.01.003

A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

Junhua Li, Huanzi Zhong, Yuliaxis Ramayo-Caldas, Nicolas Terrapon, Vincent Lombard, Gabrielle Potocki-Veronese, Jordi Estellé, Milka Popova, Ziyi Yang, Hui Zhang, Fang Li, Shanmei Tang, Fangming Yang, Weineng Chen, Bing Chen, Jiyang Li, Jing Guo, Cécile Martin, Emmanuelle Maguin, Xun Xu, Huanming Yang, Jian Wang, Lise Madsen, Karsten Kristiansen, Bernard Henrissat, Stanislav Ehrlich, Diego Morgavi

GigaScience 9 (2020)10.1093/gigascience/giaa057

Revisiting Old Questions and New Approaches to Investigate the Fungal Cell Wall Construction

Michael Blatzer, Anne Beauvais, Bernard Henrissat, Jean-Paul Latgé

425:331-369 (2020)10.1007/82_2020_209

Infection cushions of Fusarium graminearum are fungal arsenals for wheat infection

Michael Mentges, Anika Glasenapp, Marike Boenisch, Sascha Malz, Bernard Henrissat, Rasmus J.N. Frandsen, Ulrich Guldener, Martin Münsterkötter, Jörg Bormann, Marc‐henri Lebrun, Wilhelm Schäfer, Ana Lilia Martinez‐rocha

Molecular Plant Pathology 21:1070-1087 (2020)10.1111/mpp.12960

Discovery of a Fungal Copper Radical Oxidase with High Catalytic Efficiency toward 5-Hydroxymethylfurfural and Benzyl Alcohols for Bioprocessing

Yann Mathieu, Wendy Offen, Stephanie Forget, Luisa Ciano, Alexander Holm Viborg, Elena Blagova, Bernard Henrissat, Paul Walton, Gideon Davies, Harry Brumer

ACS Catalysis 10:3042-3058 (2020)10.1021/acscatal.9b04727

Discovery of hyperstable carbohydrate‐active enzymes through metagenomics of extreme environments

Andrea Strazzulli, Beatrice Cobucci‐ponzano, Roberta Iacono, Rosa Giglio, Luisa Maurelli, Nicola Curci, Corinna Schiano‐di‐cola, Annalisa Santangelo, Patrizia Contursi, Vincent Lombard, Bernard Henrissat, Federico M Lauro, Carlos M.G.A. Fontes, Marco Moracci

FEBS Journal 287:1116-1137 (2020)10.1111/febs.15080

At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions

Francesco Venice, Stefano Ghignone, Alessandra Salvioli Di Fossalunga, Joelle Amselem, Mara Novero, Xie Xianan, Kinga Sędzielewska Toro, Emmanuelle Morin, Anna Lipzen, Igor V. Grigoriev, Bernard Henrissat, Francis M. Martin, Paola Bonfante

Environmental Microbiology 22:122-141 (2020)10.1111/1462-2920.14827

A fungal family of lytic polysaccharide monooxygenase-like copper proteins

Aurore Labourel, Kristian Frandsen, Feng Zhang, Nicolas Brouilly, Sacha Grisel, Mireille Haon, Luisa Ciano, David Ropartz, Mathieu Fanuel, Francis Martin, David Navarro, Marie-Noelle Rosso, Tobias Tandrup, Bastien Bissaro, Katja S. Johansen, Anastasia Zerva, Paul H. Walton, Bernard Henrissat, Leila Lo Leggio, Jean-Guy Berrin

Nature Chemical Biology 16:345-350 (2020)10.1038/s41589-019-0438-8

Investigating host-microbiome interactions by droplet based microfluidics

Alexandra S Tauzin, Mariana Rangel Pereira, Liisa D van Vliet, Pierre-Yves Colin, Elisabeth Laville, Jeremy Esque, Sandrine Laguerre, Bernard Henrissat, Nicolas Terrapon, Vincent Lombard, Marion Leclerc, Joël Doré, Florian Hollfelder, Gabrielle Potocki-Veronese

Microbiome 8 (2020)10.1186/s40168-020-00911-z

Analysis of the diversity of the glycoside hydrolase family 130 in mammal gut microbiomes reveals a novel mannoside-phosphorylase function

Ao Li, Elisabeth Laville, Laurence Tarquis, Vincent Lombard, David Ropartz, Nicolas Terrapon, Bernard Henrissat, David Guieysse, Jeremy Esque, Julien Durand, Diego Morgavi, Gabrielle Potocki-Veronese

Microbial Genomics 6:1-14 (2020)10.1099/mgen.0.000404

Genomic analysis enlightens agaricales Lifestyle Evolution and increasing peroxidase diversity

Francisco Ruiz-Dueñas, José Barrasa, Marisol Sánchez-García, Susana Camarero, Shingo Miyauchi, Ana Serrano, Dolores Linde, Rashid Babiker, Elodie Drula, Iván Ayuso-Fernández, Remedios Pacheco, Guillermo Padilla, Patricia Ferreira, Jorge Barriuso, Harald Kellner, Raúl Castanera, Manuel Alfaro, Lucía Ramirez, Antonio Pisabarro, Robert Riley, Alan Kuo, William Andreopoulos, Kurt Labutti, Jasmyn Pangilinan, Andrew Tritt, Anna Lipzen, Guifen He, Mi Yan, Vivian Ng, Igor Grigoriev, Daniel Cullen, Marie-Noëlle Rosso, Bernard Henrissat, David Hibbett, Angel Martínez

Molecular Biology and Evolution 38:p. 1428-1446 (2020)10.1093/molbev/msaa301

Harvesting of Prebiotic Fructooligosaccharides by Nonbeneficial Human Gut Bacteria

Zhi Wang, Alexandra S. Tauzin, Elisabeth Laville, Pietro Tedesco, Fabien Letisse, Nicolas Terrapon, Pascale Lepercq, Myriam Mercade, Gabrielle Potocki-Veronese

mSphere 5:26 p. (2020)10.1128/mSphere.00771-19

Trichoderma reesei Dehydrogenase, a Pyrroloquinoline Quinone-Dependent Member of Auxiliary Activity Family 12 of the Carbohydrate-Active Enzymes Database: Functional and Structural Characterization

Annick Turbé-Doan, Eric Record, Vincent Lombard, Rajender Kumar, Anthony Levasseur, Bernard Henrissat, Marie-Line Garron

Applied and Environmental Microbiology 85:15 p. (2019)10.1128/AEM.00964-19

A metagenomics investigation of carbohydrate-active enzymes along the goat and camel intestinal tract

Saad Al-Masaudi, Abdessamad El Kaoutari, Elodie Drula, Elrashdy Redwan, Vincent Lombard, Bernard Henrissat

International Microbiology 22:429-435 (2019)10.1007/s10123-019-00068-2

Mycobacterium ulcerans mycolactones-fungi crosstalking

Nassim Hammoudi, Carole Cassagne, Nicholas Armstrong, Stéphane Ranque, Bernard Henrissat, Michel Drancourt, Amar Bouam

Scientific Reports 9 (2019)10.1038/s41598-019-39927-3

The continuing expansion of CAZymes and their families

Marie-Line Garron, Bernard Henrissat

Current Opinion in Chemical Biology 53:82-87 (2019)10.1016/j.cbpa.2019.08.004

Inverting family GH156 sialidases define an unusual catalytic motif for glycosidase action

Pedro Bule, Léa Chuzel, Elena Blagova, Liang Wu, Melissa A Gray, Bernard Henrissat, Erdmann Rapp, Carolyn Bertozzi, Christopher Taron, Gideon Davies

Nature Communications 10 (2019)10.1038/s41467-019-12684-7

Comparative genomic analyses reveal diverse virulence factors and antimicrobial resistance mechanisms in clinical Elizabethkingia meningoseptica strains

Jochen Blom, Nicolas Terrapon, Shicheng Chen, Marty Soehnlen, Jochen Blom Id, Bernard Henrissat, Edward D Walker

PLoS ONE 14:e0222648 (2019)10.1371/journal.pone.0222648

Adaptation fonctionnelle des communautés microbiennes en réponse à l’exportation massive de biomasse végétale en forêt : une analyse transcriptomique.

Lucas Auer, François Maillard, Vincent M Lombard, Bernard Henrissat, Laurent Saint‐andré, Bernhard Zeller, Francis M Martin, Marc Buée


Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613

Hongjae Park, Byoungnam Min, Yeongseon Jang, Jungyeon Kim, Anna Lipzen, Aditi Sharma, Bill Andreopoulos, Jenifer Johnson, Robert Riley, Joseph Spatafora, Bernard Henrissat, Kyoung Heon Kim, Igor Grigoriev, Jae-Jin Kim, In-Geol Choi

Applied Microbiology and Biotechnology 103:8145-8155 (2019)10.1007/s00253-019-10089-6

Updates to the Symbol Nomenclature for Glycans guidelines

Sriram Neelamegham, Kiyoko Aoki-Kinoshita, Evan Bolton, Martin Frank, Frederique Lisacek, Thomas Lütteke, Noel O'Boyle, Nicolle Packer, Pamela Stanley, Philip Toukach, Ajit Varki, Robert Woods, Noel O’boyle, Alan Darvill, Anne Dell, Bernard Henrissat, Carolyn Bertozzi, Gerald Hart, Hisashi Narimatsu, Hudson Freeze, Issaku Yamada, James Paulson, James Prestegard, Jamey Marth, J Vliegenthart, Marilynn Etzler, Markus Aebi, Minoru Kanehisa, Naoyuki Taniguchi, Nathan Edwards, Pauline Rudd, Peter Seeberger, Raja Mazumder, Rene Ranzinger, Richard Cummings, Ronald Schnaar, Serge Perez, Stuart Kornfeld, Taroh Kinoshita, William York, Yuriy Knirel

Glycobiology 29:620-624 (2019)10.1093/glycob/cwz045

Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data

Vikash Kumar, Matthieu Hainaut, Nicolas Delhomme, Chanaka Mannapperuma, Peter Immerzeel, Nathaniel R Street, Bernard Henrissat, Ewa J Mellerowicz

ACS Infectious Diseases 5:1609-1623 (2019)10.1021/acsinfecdis.9b00179

The Cellulosome Paradigm in An Extreme Alkaline Environment

Paripok Phitsuwan, Sarah Moraïs, Bareket Dassa, Bernard Henrissat, Edward A Bayer

Microorganisms 7:347 (2019)10.3390/microorganisms7090347

Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74

Grégory Arnal, Peter J Stogios, Jathavan Asohan, Mohamed Attia, Tatiana Skarina, Alexander Holm Viborg, Bernard Henrissat, Alexei Savchenko, Harry Brumer

Journal of Biological Chemistry 294:13233-13247 (2019)10.1074/jbc.RA119.009861

Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans

Michael Patnode, Zachary Beller, Nathan Han, Jiye Cheng, Samantha Peters, Nicolas Terrapon, Bernard Henrissat, Sophie Le Gall, Luc Saulnier, David Hayashi, Alexandra Meynier, Sophie Vinoy, Richard J Giannone, Robert L Hettich, Jeffrey I Gordon

Cell 179:59-73.e13 (2019)10.1016/j.cell.2019.08.011

Fungal ecological strategies reflected in gene transcription ‐ a case study of two litter decomposers

Florian Barbi, Annegret Kohler, Kerrie Barry, Preetisri Baskaran, Chris Daum, Laure Fauchery, Katarina Ihrmark, Alan Kuo, Kurt Labutti, Anna Lipzen, Emmanuelle Morin, Igor Grigoriev, Bernard Henrissat, Björn Lindahl, Francis Martin

Environmental Microbiology 22:1089-1103 (2019)10.1111/1462-2920.14873

Effects of microbiota-directed foods in gnotobiotic animals and undernourished children

Jeanette L Gehrig, Siddarth Venkatesh, Hao-Wei Chang, Matthew C Hibberd, Vanderlene L Kung, Jiye Cheng, Robert y Chen, Sathish Subramanian, Carrie A Cowardin, Martin F Meier, David O'Donnell, Michael Talcott, Larry D Spears, Clay F Semenkovich, Bernard Henrissat, Richard J Giannone, Robert L Hettich, Olga Ilkayeva, Michael Muehlbauer, Christopher B Newgard, Christopher Sawyer, Richard D Head, Dmitry Rodionov, Aleksandr A Arzamasov, Semen A Leyn, Andrei L Osterman, Iqbal Hossain, Munirul Islam, Nuzhat Choudhury, Shafiqul Alam Sarker, Sayeeda Huq, Imteaz Mahmud, Ishita Mostafa, Mustafa Mahfuz, Michael J Barratt, Tahmeed Ahmed, Jeffrey I Gordon

Science 365 (2019)10.1126/science.aau4732

Comparative genomics of Rhizophagus irregularis , R. cerebriforme , R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina

Emmanuelle Morin, Hélène San Clemente, Shingo Miyauchi, Eric C H Chen, Alan Kuo, Elodie Drula, Igor V Grigoriev, Bernard Henrissat, Christophe Roux, Nicolas Corradi, Francis M Martin


Comparative genomics reveals unique wood‐decay strategies and fruiting body development in the Schizophyllaceae

Neha Sahu, Krisztina Krizsán, Balázs Bálint, Gabor G Kovacs, Brigitta Kiss, Judit Cseklye, Elodie Drula, Bernard Henrissat, István Nagy, Mansi Chovatia, Catherine Adam, Kurt Labutti, Anna Lipzen, Robert Riley, Igor Grigoriev, Laszlo Nagy

New Phytologist 224:902-915 (2019)10.1111/nph.16032

Genomic insights from Monoglobus pectinilyticus: a pectin-degrading specialist bacterium in the human colon

Caroline Kim, Genelle Healey, William Kelly, Mark Patchett, Zoe Jordens, Gerald Tannock, Ian Sims, Tracey Bell, Duncan Hedderley, Bernard Henrissat, Douglas Rosendale

The International Society of Microbiologial Ecology Journal 13:1437-1456 (2019)10.1038/s41396-019-0363-6

Bacteroidetes use thousands of enzyme combinations to break down glycans

Pascal Lapébie, Vincent Lombard, Elodie Drula, Nicolas Terrapon, Bernard Henrissat

Nature Communications 10:1 (2019)10.1038/s41467-019-10068-5

Unraveling the subtleties of β-(1→3)-glucan phosphorylase specificity in the GH94, GH149, and GH161 glycoside hydrolase families

Sakonwan Kuhaudomlarp, Giulia Pergolizzi, Nicola Patron, Bernard Henrissat, Robert W. Field

Journal of Biological Chemistry 294:6483-6493 (2019)10.1074/jbc.RA119.007712

Tracking of enzymatic biomass deconstruction by fungal secretomes highlights markers of lignocellulose recalcitrance

Gabriel Paës, David Navarro, Yves Benoit, Senta Blanquet, Brigitte Chabbert, Bernard Chaussepied, Pedro Coutinho, Sylvie Durand, Igor Grigoriev, Marie-Noelle Rosso, Laurent Heux, Charlène Launay, Mireille Haon, Antoine Margeot, Yoshiharu Nishiyama, Sana Raouche, Marie-Noëlle Rosso, Estelle Bonnin, Jean-Guy Berrin

Biotechnology for Biofuels 12 (2019)10.1186/s13068-019-1417-8

Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space

William Helbert, Laurent Poulet, Sophie Drouillard, Sophie Mathieu, Mélanie Loiodice, Marie Couturier, Vincent Lombard, Nicolas Terrapon, Jeremy Turchetto, Vincent Vincentelli, Bernard Henrissat

Proceedings of the National Academy of Sciences of the United States of America 116:6063-6068 (2019)10.1073/pnas.1815791116

Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi

Krisztina Krizsán, Éva Almási, Zsolt Merényi, Neha Sahu, Máté Virágh, Tamás Kószó, Stephen Mondo, Brigitta Kiss, Balázs Bálint, Ursula Kües, Kerrie Barry, Judit Cseklye, Botond Hegedüs, Bernard Henrissat, Jenifer Johnson, Anna Lipzen, Robin A Ohm, István Nagy, Jasmyn Pangilinan, Juying Yan, Yi Xiong, Igor V Grigoriev, David S Hibbett, László G Nagy

Proceedings of the National Academy of Sciences of the United States of America 116:7409-7418 (2019)10.1073/pnas.1817822116

AA16, a new Lytic Polysaccharide Monooxygenase family identified in fungal secretomes

Camille Filiatrault-Chastel, David Navarro, Mireille Haon, Sacha Grisel, Isabelle Gimbert Herpoël-Gimbert, Didier Chevret, Mathieu Fanuel, Bernard Henrissat, Senta Heiss-Blanquet, Antoine Margeot, Jean-Guy Berrin

Biotechnology for Biofuels 12 (2019)10.1186/s13068-019-1394-y

Investigating Host Microbiota Relationships Through Functional Metagenomics

Elisabeth Laville, Josette Perrier, Nada Bejar, Marc Maresca, Jeremy Esque, Alexandra Tauzin, Emma Bouhajja, Marion Leclerc, Elodie Drula, Bernard Henrissat, Stephane Berdah, Eric Di Pasquale, Patrick Robe, Gabrielle Potocki-Veronese

Frontiers in Microbiology 10:12 p. (2019)10.3389/fmicb.2019.01286

Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina

Emmanuelle Morin, Shingo Miyauchi, Hélène San Clemente, Eric C. H. Chen, Adrian Pelin, Ivan de La Providencia, Steve Ndikumana, Denis Beaudet, Matthieu Hainaut, Elodie Drula, Alan Kuo, Nianwu Tang, Sébastien Roy, Julie Viala, Bernard Henrissat, Igor V Grigoriev, Nicolas Corradi, Christophe Roux, Francis M. Martin

New Phytologist 222:1584-1598 (2019)10.1111/nph.15687

Evolution and comparative genomics of the most common Trichoderma species

Christian P. Kubicek, Andrei S. Steindorff, Komal Chenthamara, Gelsomina Manganiello, Bernard Henrissat, Jian Zhang, Feng Cai, Alexey G. Kopchinskiy, Eva M. Kubicek, Alan Kuo, Riccardo Baroncelli, Sabrina Sarrocco, Eliane Ferreira Noronha, Giovanni Vannacci, Qirong Shen, Igor V. Grigoriev, Irina S. Druzhinina

BMC Genomics 20 (2019)10.1186/s12864-019-5680-7

Multi-omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring

Hao Tan, Annegret Kohler, Renyun Miao, Tianhai Liu, Qiang Zhang, Bo Zhang, Lin Jiang, Yong Wang, Liyuan Xie, Jie Tang, Xiaolin Li, Lixu Liu, Igor V Grigoriev, Chris Daum, Kurt Labutti, Anna Lipzen, Alan Kuo, Emmanuelle Morin, Elodie Drula, Bernard Henrissat, Bo Wang, Zhongqian Huang, Bingcheng Gan, Weihong Peng, Francis Martin

Environmental Microbiology 21:3909-3926 (2019)10.1111/1462-2920.14741

Insights into an unusual auxiliary activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases

Kristian Frandsen, Morten Tovborg, Christian Jørgensen, Nikolaj Spodsberg, Marie-Noelle Rosso, Glyn R. Hemsworth, Elspeth F. Garman, Geoffrey W. Grime, Jens-Christian N. Poulsen, Tanveer S. Batth, Shingo Miyauchi, Anna Lipzen, Chris Daum, Igor V. Grigoriev, Katja S Johansen, Bernard Henrissat, Jean-Guy Berrin, Leila Lo Leggio

Journal of Biological Chemistry 294:17117-17130 (2019)10.1074/jbc.RA119.009223

A subfamily roadmap for functional glycogenomics of the evolutionarily diverse Glycoside Hydrolase Family 16 (GH16)

Alexander Holm Viborg, Nicolas Terrapon, Vincent Lombard, Gurvan Michel, Mirjam Czjzek, Bernard Henrissat, Harry Brumer

Journal of Biological Chemistry 294:15973-15986 (2019)10.1074/jbc.RA119.010619

Broad‐specificity GH131 β‐glucanases are a hallmark of Fungi and Oomycetes that colonise plants

Georgios Anasontzis, Marc-Henri Lebrun, Mireille Haon, Charlotte Champion, Annegret Kohler, Nicolas Lenfant, Francis Martin, Richard O'Connell, Robert Riley, Igor V. Grigoriev, Bernard Henrissat, Jean-Guy Berrin, Marie-Noelle Rosso

Environmental Microbiology np (2019)10.1111/1462-2920.14596

From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus

Benoit J Kunath, Francesco Delogu, Adrian E Naas, Magnus Ø. Arntzen, Vincent Eijsink, Bernard Henrissat, Torgeir Hvidsten, Philippe B. Pope

The International Society of Microbiologial Ecology Journal 13:603-617 (2019)10.1038/s41396-018-0290-y

Sucrose 6F-phosphate phosphorylase: a novel insight in the human gut microbiome

Alexandra Tauzin, Laetitia Bruel, Elisabeth Laville, Cendrine Nicoletti, David Navarro, Bernard Henrissat, Josette Perrier, Gabrielle Potocki-Veronese, Thierry Giardina, Mickael Lafond

Microbial Genomics np (2019)10.1099/mgen.0.000253

Proteomic Dissection of the Cellulolytic Machineries Used by Soil-Dwelling Bacteroidetes

Marcel Taillefer, Magnus Arntzen, Bernard Henrissat, Phillip Pope, Johan Larsbrink

mSystems 3 (2018)10.1128/mSystems.00240-18

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

Yoann Seeleuthner, Samuel Mondy, Vincent Lombard, Quentin Carradec, Eric Pelletier, Marc Wessner, Jade Leconte, Jean-François Mangot, Julie Poulain, Karine Labadie, Ramiro Logares, Shinichi Sunagawa, Véronique de Berardinis, Marcel Salanoubat, Céline Dimier, Stefanie Kandels-Lewis, Marc Picheral, Sarah Searson, Stéphane Pesant, Nicole Poulton, Ramunas Stepanauskas, Peer Bork, Chris Bowler, Pascal Hingamp, Matthew B. Sullivan, Daniele Iudicone, Ramon Massana, Jean-Marc Aury, Bernard Henrissat, Eric Karsenti, Olivier Jaillon, Mike Sieracki, Colomban de Vargas, Patrick Wincker, Silvia G. Acinas, Emmanuel Boss, Michael Follows, Gabriel Gorsky, Nigel Grimsley, Lee Karp-Boss, Uros Krzic, Fabrice Not, Jeroen Raes, Emmanuel G. Reynaud, Christian Sardet, Sabrina Speich, Lars Stemmann, Jean Weissenbach, Didier Velayoudon

Nature Communications 9:310 (2018)10.1038/s41467-017-02235-3

Leveraging single-cell genomics to expand the fungal tree of life

Steven Ahrendt, C Alisha Quandt, Doina Ciobanu, Alicia Clum, Asaf Salamov, Bill Andreopoulos, Jan-Fang Cheng, Tanja Woyke, Adrian Pelin, Bernard Henrissat, Nicole Reynolds, Gerald Benny, Matthew Smith, Timothy James, Igor Grigoriev

Nature Microbiology 3:1417-1428 (2018)10.1038/s41564-018-0261-0

Analysis of carbohydrate-active enzymes in Thermogemmatispora sp. strain T81 reveals carbohydrate degradation ability

Atilio Tomazini, Sadhana Lal, Riffat Munir, Matthew Stott, Bernard Henrissat, Igor Polikarpov, Richard Sparling, David Levin

Canadian Journal of Microbiology 64:992-1003 (2018)10.1139/cjm-2018-0336

A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)

Sean Ma, Yolanda Chen, Martin Ma, Joshua Benoit, Anita Bhandari, Julia Bowsher, Kristian Brevik, Kaat Cappelle, Mei-Ju Li, Anna Childers, Christopher Li, Olivier Christiaens, Justin Ma, Elise Didion, Elena Elpidina, Patamarerk Engsontia, Markus Ma, Inmaculada García-Robles, Richard Gibbs, Chandan Goswami, Alessandro Grapputo, Kristina Gruden, Marcin Ma, Bernard Ma, Emily Jennings, Jeffery Jones, Megha Kalsi, Sher Afzal Khan, Abhishek Kumar, Fei Li, Vincent Ma, Xingzhou Ma, Alex Martynov, Nicholas Miller, Robert Mitchell, Monica Muñoz-Torres, Anna Muszewska, Brenda Oppert, Subba Reddy Palli, Kristen Panfilio, Yannick Pauchet, Lindsey Perkin, Marko Petek, Monica Poelchau, Eric Record, Joseph Rinehart, Hugh Robertson, Andrew Rosendale, Victor Ruiz-Arroyo, Guy Smagghe, Zsofia Szendrei, Gregg W.C Thomas, Alex Torson, Iris Vargas Jentzsch, Matthew Weirauch, Ashley Yates, George Yocum, June-Sun Yoon, Stephen Richards, Sean Schoville, Martin Andersson, Mei-Ju Chen, Christopher Childers, Justin Clements, Markus Friedrich, Marcin Grynberg, Bernard Henrissat, Vincent Lombard, Alexander Ma, Lindsey Li, Marko Ma, Robert Robertson, Gregg W.C. Thomas, Matthew Ma, Richard Richards

Scientific Reports 8:1931 (2018)10.1038/s41598-018-20154-1

Genome Sequencing and analyses of Two Marine Fungi from the North Sea Unraveled a Plethora of Novel Biosynthetic Gene Clusters

Abhishek Kumar, Jens Laurids Sørensen, Frederik Teilfeldt Hansen, Mikko Arvas, Muhammad Fahad Syed, Lara Hassan, J Philipp Benz, Eric Record, Bernard Henrissat, Stefanie Pöggeler, Frank Kempken, J. Philipp Benz

Scientific Reports 8:10187 (2018)10.1038/s41598-018-28473-z

Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times

Xiaoyu Liang, Jason Whitham, Evert Holwerda, Xiongjun Shao, Liang Tian, Yu-Wei Wu, Vincent Lombard, Bernard Henrissat, Dawn Klingeman, Zamin Yang, Mircea Podar, Tom Richard, James Elkins, Steven S Brown, Lee Lynd

Biotechnology for Biofuels 11:243 (2018)10.1186/s13068-018-1238-1

Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri

Tammi C. Vesth, Jane L. Nybo, Sebastian Theobald, Jens C. Frisvad, Thomas O. Larsen, Kristian F. Nielsen, Jakob B. Hoof, Julian Brandl, Asaf Salamov, Robert Riley, John M. Gladden, Pallavi Phatale, Morten Nielsen, Ellen Lyhne, Martin E. Kogle, Kimchi Strasser, Erin Mcdonnell, Kerrie Barry, Alicia Clum, Cindy Chen, Kurt Labutti, Sajeet Haridas, Matt Nolan, Laura Sandor, Alan Kuo, Anna Lipzen, Matthieu Hainaut, Elodie Drula, Adrian Tsang, Jon K. Magnuson, Bernard Henrissat, Ad Wiebenga, Blake A. Simmons, Miia R. Mäkelä, Ronald P. de Vries, Igor V. Grigoriev, Uffe H. Mortensen, Scott E. Baker, Mikael R. Handersen

Nature Genetics 50:1688-1695 (2018)10.1038/s41588-018-0246-1

An ancient family of lytic polysaccharide monooxygenases with roles in arthropod development and biomass digestion

Federico Sabbadin, Glyn Hemsworth, Luisa Ciano, Bernard Henrissat, Paul P. Dupree, Theodora T. Tryfona, Rita Marques, Sean Sweeney, Katrin Besser, Luisa Elias, Giovanna Pesante, Yi Li, Adam Dowle, Rachel Bates, Leonardo Gomez, Rachael Simister, Gideon Davies, Paul Walton, Neil D.B. Bruce, Simon Mcqueen-Mason

Nature Communications 9:756 (2018)10.1038/s41467-018-03142-x

Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids

Ugo Cenci, Shannon Sibbald, Bruce Curtis, Ryoma Kamikawa, Laura Eme, Daniel Moog, Bernard Henrissat, Eric Marechal, Malika Chabi, Christophe Djemiel, Andrew Roger, Eunsoo Kim, John Archibald

BMC Biology 16:137 (2018)10.1186/s12915-018-0593-5

Ancient acquisition of “alginate utilization loci” by human gut microbiota

Sophie Mathieu, Mélanie Touvrey-Loiodice, Laurent Poulet, Sophie Drouillard, Renaud Vincentelli, Bernard Henrissat, Gudmund Skjåk-Bræk, William Helbert

Scientific Reports 8:8075 (2018)10.1038/s41598-018-26104-1

Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi

Dániel Knapp, Julianna Németh, Kerrie Barry, Matt Hainaut, Bernard Henrissat, Jenifer Johnson, Alan Kuo, Joanne Hui Ping Lim, Anna Lipzen, Matt Nolan, Robin Ohm, László Tamás, Igor Grigoriev, Joseph Spatafora, Laszlo Nagy, Gabor G Kovacs, Matthieu Hainaut

Scientific Reports 8:6321 (2018)10.1038/s41598-018-24686-4

The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet

Alexey Grum-Grzhimaylo, Daniel Falkoski, Joost van den Heuvel, Claudio Valero-Jiménez, Byoungnam Min, In-Geol Choi, Anna Lipzen, Chris Daum, Duur Aanen, Adrian Tsang, Bernard Henrissat, Elena Bilanenko, Ronald de Vries, Jan van Kan, Igor Grigoriev, Alfons Debets

Molecular Ecology 27:4808-4819 (2018)10.1111/mec.14912

De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads

David W Eccles, Jodie Chandler, Mali Camberis, Bernard Henrissat, Sergey Koren, Graham Le Gros, Jonathan J. Ewbank

BMC Biology 16:6 (2018)10.1186/s12915-017-0473-4

Functional signatures of soil fungal communities in response to forest tree phenology revealed by metatranscriptome analysis

Marc Buée, Lucas Auer, Patricia Luis, Olivier Rué, Valentin Loux, Vincent M Lombard, Bernard Henrissat, Roland Marmeisse, Igor Gregoriev, Annegret Kohler, Francis M Martin


Functional metagenomics identifies an exosialidase with an inverting catalytic mechanism that defines a new glycoside hydrolase family (GH156)

Léa Chuzel, Mehul Ganatra, Erdmann Rapp, Bernard Henrissat, Christopher Taron

Journal of Biological Chemistry 293:18138-18150 (2018)10.1074/jbc.RA118.003302

A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation

Alan Cartmell, Li Muñoz-Muñoz, Jonathon Briggs, Didier Ndeh, Elisabeth Lowe, Arnaud Basle, Nicolas Terrapon, Katherine Stott, Tiaan Heunis, Joe Gray, Li Yu, Paul P. Dupree, Pearl Fernandes, Sayali Shah, Spencer Williams, Aurore Labourel, Matthias Trost, Bernard Henrissat, Harry Gilbert, Jose Munoz-Munoz

Nature Microbiology 3:1314-1326 (2018)10.1038/s41564-018-0258-8

Rapid Divergence of Genome Architectures Following the Origin of an Ectomycorrhizal Symbiosis in the Genus Amanita

Jaqueline Hess, Inger Skrede, Maryam Chaib de Mares, Matthieu Hainaut, Bernard Henrissat, Anne Pringle

Molecular Biology and Evolution 35:2786-2804 (2018)10.1093/molbev/msy179

Metagenomic Assembly and Prokaryotic Metagenome-Assembled Genome Sequences from the Northern Gulf of Mexico “Dead Zone”

J Cameron Thrash, Brett Baker, Kiley Seitz, Ben Temperton, Lauren Gillies Campbell, Nancy Rabalais, Bernard Henrissat, Olivia Mason, David Baltrus

Microbiology Resource Announcements 7:1-3 (2018)10.1128/MRA.01033-18

Broad Genomic Sampling Reveals a Smut Pathogenic Ancestry of the Fungal Clade Ustilaginomycotina

Teeratas Kijpornyongpan, Stephen Mondo, Kerrie Barry, Laura Sandor, Juna Lee, Anna Lipzen, Jasmyn Pangilinan, Kurt Labutti, Matthieu Hainaut, Bernard Henrissat, Igor Grigoriev, Joseph Spatafora, M Catherine Aime, Fabia Ursula Battistuzzi

Molecular Biology and Evolution 35:1840-1854 (2018)10.1093/molbev/msy072

Production of α-1,3-L-arabinofuranosidase active on substituted xylan does not improve compost degradation by Agaricus bisporus

Aurin Vos, Edita Jurak, Peter de Gijsel, Robin Ohm, Bernard Henrissat, Luis Lugones, Mirjam Kabel, Han Wösten

PLoS ONE 13:e0201090 (2018)10.1371/journal.pone.0201090

Exploring genome diversity of 6 strains of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis

Emmanuelle Morin, Eric C H Chen, Alan Kuo, Denis Beaudet, Igor V Grigoriev, Bernard Henrissat, Christophe Roux, Nicolas Corradi, Francis M Martin


Talaromyces borbonicus , sp. nov., a novel fungus from biodegraded Arundo donax with potential abilities in lignocellulose conversion

Simona Varriale, Jos Houbraken, Zoraide Granchi, Olimpia Pepe, Gabriella Cerullo, Valeria Ventorino, Thomas Chin-A-Woeng, Martin Meijer, Robert Riley, Igor Grigoriev, Bernard Henrissat, Ronald de Vries, Vincenza Faraco

Mycologia 110:316-324 (2018)10.1080/00275514.2018.1456835

Glycosyltransferase genes that cause monogenic congenital disorders of glycosylation are distinct from glycosyltransferase genes associated with complex diseases

Hiren Joshi, Lars Hansen, Yoshiki Narimatsu, Hudson Freeze, Bernard Henrissat, Eric Bennett, Hans Wandall, Henrik Clausen, Katrine Schjoldager

Glycobiology 28:284-294 (2018)10.1093/glycob/cwy015

Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts

Irina Druzhinina, Komal Chenthamara, Jian Zhang, Lea Atanasova, Dongqing Yang, Youzhi Miao, Mohammad Rahimi, Marica Grujic, Feng Cai, Shadi Pourmehdi, Kamariah Abu Salim, Carina Pretzer, Alexey Kopchinskiy, Bernard Henrissat, Alan Kuo, Hope Hundley, Mei Wang, Andrea A. Aerts, Asaf Salamov, Anna Lipzen, Kurt Labutti, Kerrie Barry, Igor Grigoriev, Qirong Shen, Christian Kubicek

PLoS Genetics 14:e1007322 (2018)10.1371/journal.pgen.1007322

Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga

Miia Mäkelä, Mao Peng, Zoraide Granchi, Thomas Chin-A-Woeng, Rosa Hegi, Sake van Pelt, Steven Ahrendt, Robert Riley, Matthieu Hainaut, Bernard Henrissat, Igor Grigoriev, Ronald de Vries, Kristiina Hildén

Genome Announcements 6:1414-1431 (2018)10.1128/genomeA.01414-17

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection

Rekha Seshadri, Sinead Leahy, Graeme Attwood, Koon Hoong Teh, Suzanne Lambie, Adrian Cookson, Emiley Eloe-Fadrosh, Georgios Pavlopoulos, Michalis Hadjithomas, Neha Varghese, David Páez-Espino, Rechelle Perry, Gemma Henderson, Christopher J. Creevey, Nicolas Terrapon, Pascal Lapébie, Elodie Drula, Vincent Lombard, Edward M. Rubin, Nikos Kyrpides, Bernard Henrissat, Tanja Woyke, Natalia Ivanova, William Kelly, Nikola Palevich, Peter Janssen, Ron Ronimus, Samantha Noel, Priya Soni, Kerri Reilly, Todd Atherly, Cherie Ziemer, Andre-Denis Wright, Suzanne Ishaq, Michael Cotta, Stephanie Thompson, Katie Crosley, Nest Mckain, R John Wallace, Harry Flint, Jennifer Martin, Robert Forster, Robert Gruninger, Tim Mcallister, Rosalind Gilbert, Diane Ouwerkerk, Athol Klieve, Rafat Al Jassim, Stuart Denman, Chris Mcsweeney, Carly Rosewarne, Satoshi Koike, Yasuo Kobayashi, Makoto Mitsumori, Takumi Shinkai, Silvio Cravero, María Cerón Cucchi, Chris Creevey

Nature Biotechnology 36:359-367 (2018)10.1038/nbt.4110

Identification of Euglena gracilis β-1,3-glucan phosphorylase and establishment of a new glycoside hydrolase (GH) family GH149

Sakonwan Kuhaudomlarp, Nicola Patron, Bernard Henrissat, Martin Rejzek, Gerhard Saalbach, Robert W. Field

Journal of Biological Chemistry 293:2865-2876 (2018)10.1074/jbc.RA117.000936

The ectomycorrhizal basidiomycete Laccaria bicolor releases a secreted β-1,4 endoglucanase that plays a key role in symbiosis development

Feng Zhang, George Anasontzis, Aurore Labourel, Charlotte Champion, Mireille Haon, Minna Kemppainen, Carine Commun, Alejandro Pardo, Claire Veneault-Fourrey, Annegret Kohler, Marie-Noelle Rosso, Bernard Henrissat, Jean-Guy Berrin, Francis Martin

New Phytologist 220:1309-1321 (2018)10.1111/nph.15113

Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists

Elena Martino, Emmanuelle Morin, Gwen-Aëlle Grelet, Alan Kuo, Annegret Kohler, Stefania Daghino, Kerrie Barry, Nicolas Cichocki, Alicia Clum, Rhyan Dockter, Matthieu Hainaut, Rita Kuo, Kurt Labutti, Björn Lindahl, Erika Lindquist, Anna Lipzen, Hassine-Radhouane Khouja, Jon Magnuson, Claude Murat, Robin Ohm, Steven Singer, Joseph Spatafora, Mei Wang, Claire Veneault-Fourrey, Bernard Henrissat, Igor Grigoriev, Francis Martin, Silvia Perotto

New Phytologist 217:1213-1229 (2018)10.1111/nph.14974

Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides

Ana R Luis, Jonathon Briggs, Xiaoyang Zhang, Benjamin Farnell, Didier Ndeh, Aurore Labourel, Arnaud Basle, Alan Cartmell, Nicolas Terrapon, Katherine Stott, Elisabeth Lowe, Richard Mclean, Kaitlyn Shearer, Julia Schuckel, Immacolata Venditto, Marie-Christine Ralet, Bernard Henrissat, Eric Martens, Steven Mosimann, D Wade Abbott, Harry Gilbert, D. Wade Abbott

Nature Microbiology 3:210-219 (2018)10.1038/s41564-017-0079-1

Lytic xylan oxidases from wood-decay fungi unlock biomass degradation

Marie Couturier, Simon Ladeveze, Gerlind Sulzenbacher, Luisa Ciano, Mathieu Fanuel, Céline Moreau, Ana Villares, Bernard Cathala, Florence Chaspoul, Kristian Frandsen, Aurore Labourel, Isabelle Gimbert Herpoël-Gimbert, Sacha Grisel, Mireille Haon, Nicolas Lenfant, Hélène Rogniaux, David Ropartz, Gideon Davies, Marie-Noelle Rosso, Paul Walton, Bernard Henrissat, Jean-Guy Berrin

Nature Chemical Biology 14:306-310 (2018)10.1038/nchembio.2558

PULDB: the expanded database of Polysaccharide Utilization Loci

Nicolas Terrapon, Vincent Lombard, Elodie Drula, Pascal Lapébie, Saad Al-Masaudi, Harry Gilbert, Bernard Henrissat

Nucleic Acids Research 46:D677-D683 (2018)10.1093/nar/gkx1022

The human gut microbe Bacteroides thetaiotaomicron encodes the founding member of a novel glycosaminoglycan-degrading polysaccharide lyase family PL29

Didier Ndeh, Jose Munoz Munoz, Alan Cartmell, David Bulmer, Corinne Wills, Bernard Henrissat, Joseph Gray

Journal of Biological Chemistry 293:17906-17916 (2018)10.1074/jbc.RA118.004510

Comparative analysis of basidiomycete transcriptomes reveals a core set of expressed genes encoding plant biomass degrading enzymes

Mao Peng, Maria Victoria Aguilar-Pontes, Matthieu Hainaut, Bernard Henrissat, Kristiina Hildén, Miia R. Makela, Ronald P. de Vries

Fungal Genetics and Biology 112:40-46 (2018)10.1016/j.fgb.2017.08.001

Structural Dynamics and Catalytic Properties of a Multimodular Xanthanase

Olga V. Moroz, Pernille F. Jensen, Sean P. Mcdonald, Nicholas Mcgregor, Elena Blagova, Gerard Comamala, Dorotea R. Seura, Lars Anderson, Santhosh M. Vasu, Vasudeva P. Rao, Lars Giger, Trine Hoist Sorensen, Rune Nygaard Monrad, Allan Svendsen, Jens Nielsen, Bernard Henrissat, Gideon Davies, Harry Brumer, Kasper D. Rand, Keith S. Wilson

ACS Catalysis 8:6021-6034 (2018)10.1021/acscatal.8b00666

Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass

Shingo Miyauchi, Anaïs Rancon, Elodie Drula, Hayat Hage, Delphine Chaduli, Anne Favel, Sacha Grisel, Bernard Henrissat, Isabelle Herpoel-Gimbert, Francisco J. Ruiz-Duenas, Didier Chevret, Matthieu Hainaut, Junyan Lin, Mei Wang, Jasmyn Pangilinan, Anna Lipzen, Laurence Lesage-Meessen, David Navarro, Robert Riley, Igor V. Grigoriev, Simeng Zhou, Sana Raouche, Marie-Noelle Rosso

Biotechnology for Biofuels 11:np (2018)10.1186/s13068-018-1198-5

Novel carbohydrate binding modules in the surface anchored α-amylase of Eubacterium rectale provide a molecular rationale for the range of starches used by this organism in the human gut

Darrell Cockburn, Carolyn Suh, Krizia Perez Medina, Rebecca Duvall, Zdzislaw Wawrzak, Bernard Henrissat, Nicole Koropatkin

Molecular Microbiology 107:249-264 (2018)10.1111/mmi.13881

High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis

Eric C H Chen, Emmanuelle Morin, Denis Beaudet, Jessica Noel, Gokalp Yildirir, Steve Ndikumana, Philippe Charron, Camille St-Onge, John Giorgi, Manuela Krüger, Timea Marton, Jeanne Ropars, Igor V. Grigoriev, Matthieu Hainaut, Bernard Henrissat, Christophe Roux, Francis Martin, Nicolas Corradi

New Phytologist 220:1161-1171 (2018)10.1111/nph.14989

Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle

Claude Murat, Thibaut Payen, Benjamin Noël, Alan Kuo, Emmanuelle Morin, Juan Chen, Annegret Kohler, Krisztina Krizsán, Raffaella Balestrini, Corinne da Silva, Barbara Montanini, Matthieu Hainaut, Elisabetta Levati, Kerrie Barry, Beatrice Belfiori, Nicolas Cichocki, Alicia Clum, Rhyan Dockter, Laure Fauchery, Julie Guy, Mirco Iotti, François F. Le Tacon, Erika Lindquist, Anna Lipzen, Fabienne Malagnac, Antonietta Mello, Virginie Molinier, Shingo Miyauchi, Julie Poulain, Claudia Riccioni, Andrea Rubini, Yaron Sitrit, Richard Splivallo, Stefanie S. Traeger, Mei Wang, Daniel Wipf, Alessandra Zambonelli, Francesco Paolocci, Minou Nowrousian, Simone Ottonello, Petr Baldrian, Joseph Spatafora, Bernard Henrissat, Laszlo Nagy, Jean-Marc Aury, Patrick Wincker, Igor Grigoriev, Paola Bonfante, Francis Martin

Nature Ecology & Evolution 2:1956-1965 (2018)10.1038/s41559-018-0710-4

Lavender- and lavandin-distilled straws: an untapped feedstock with great potential for the production of high-added value compounds and fungal enzymes

Laurence Lesage-Meessen, Marine Bou, Christian Ginies, Didier Chevret, David Navarro, Elodie Drula, Estelle Bonnin, José C del Río, Elise Odinot, Alexandra Bisotto, Jean-Guy J.-G. Berrin, Jean-Claude Sigoillot, Craig Faulds, Anne Lomascolo

Biotechnology for Biofuels 11:217 (2018)10.1186/s13068-018-1218-5

Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes

Wade Abbott, Orly Alber, Ed Bayer, Jean-Guy Berrin, Alisdair Boraston, Harry Brumer, Ryszard Brzezinski, Anthony Clarke, Beatrice Cobucci-Ponzano, Darrell Cockburn, Pedro Coutinho, Mirjam Czjzek, Bareket Dassa, Gideon John Davies, Vincent Eijsink, Jens Eklof, Alfons Felice, Elizabeth Ficko-Blean, Geoff Pincher, Thierry Fontaine, Zui Fujimoto, Kiyotaka Fujita, Shinya Fushinobu, Harry Gilbert, Tracey Gloster, Ethan Goddard-Borger, Ian Greig, Jan-Hendrik Hehemann, Glyn Hemsworth, Bernard Henrissat, Masafumi Hidaka, Ramon Hurtado-Guerrero, Kiyohiko Igarashi, Takuya Ishida, Stefan Janecek, Seino Jongkees, Nathalie Juge, Satoshi Kaneko, Takane Katayama, Motomitsu Kitaoka, Naotake Konno, Daniel Kracher, Anna Kulminskaya, Alicia Lammerts van Bueren, Sine Larsen, Junho Lee, Markus Linder, Leila Loleggio, Roland Ludwig, Ana Luis, Mirko Maksimainen, Brian Mark, Richard Mclean, Gurvan Michel, Cédric Montanier, Marco Moracci, Haruhide Mori, Hiroyuki Nakai, Wim Nerinckx, Takayuki Ohnuma, Richard Pickersgill, Kathleen Piens, Tirso Pons, Etienne Rebuffet, Peter Reilly, Magali Remaud Simeon, Brian Rempel, Kyle Robinson, David Rose, Juha Rouvinen, Wataru Saburi, Yuichi Sakamoto, Mats Sandgren, Fathima Shaikh, Yuval Shoham, Franz St John, Jerry Stahlberg, Michael Suits, Gerlind Sulzenbacher, Tomomi Sumida, Ryuichiro Suzuki, Birte Svensson, Toki Taira, Ed Taylor, Takashi Tonozuka, Breeanna Urbanowicz, Gustav Vaaje-Kolstad, Wim van den Ende, Annabelle Varrot, Maxime Versluys, Florence Vincent, David Vocadlo, Warren Wakarchuk, Tom Wennekes, Rohan Williams, Spencer Williams, David Wilson, Stephen Withers, Katsuro Yaoi, Vivian Yip, Ran Zhang

Glycobiology 28:3-8 (2018)10.1093/glycob/cwx089

The CAZy Database/the Carbohydrate-Active Enzyme (CAZy) Database: Principles and Usage Guidelines

Nicolas Terrapon, Vincent Lombard, Elodie Drula, Pedro Coutinho, Bernard Henrissat

117-131 (2017)10.1007/978-4-431-56454-6_6

Structural and electronic determinants of lytic polysaccharide monooxygenase reactivity on polysaccharide substrates

T. Simmons, K.E.H Frandsen, L Ciano, T Tryfona, N Lenfant, J C Poulsen, L Wilson, T Tandrup, M Tovborg, K Schnorr, K. Johansen, Bernard Henrissat, P. Walton, L Lo Leggio, P. Dupree

Nature Communications 8:1064 (2017)10.1038/s41467-017-01247-3

The yeast Geotrichum candidum encodes functional lytic polysaccharide monooxygenases

Simon Ladevèze, Mireille Haon, Ana Villares, Bernard Cathala, Sacha Grisel, Isabelle Herpoël-Gimbert, Bernard Henrissat, Jean-Guy Berrin

Biotechnology for Biofuels 10 (2017)10.1186/s13068-017-0903-0

Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters

Jean-Félix Dallery, Nicolas Lapalu, Antonios Zampounis, Sandrine Pigné, Isabelle Luyten, Joëlle Amselem, Alexander Wittenberg, Shiguo Zhou, Marisa de Queiroz, Guillaume Robin, Annie Auger, Matthieu Hainaut, Bernard Henrissat, Ki-Tae Kim, Yong-Hwan Lee, Olivier Lespinet, David Schwartz, Michael Thon, Richard O'Connell

BMC Genomics 18:667 (2017)10.1186/s12864-017-4083-x

Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation

Olov Svartström, Johannes Alneberg, Nicolas Terrapon, Vincent Lombard, Ino de Bruijn, Jonas Malmsten, Ann-Marie Dalin, Emilie El Muller, Pranjul Shah, Paul Wilmes, Bernard Henrissat, Henrik Aspeborg, Anders Andersson

The International Society of Microbiologial Ecology Journal 11:2538-2551 (2017)10.1038/ismej.2017.108

Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis

Eleni Gentekaki, Bruce Curtis, Courtney Stairs, Vladimír Klimeš, Marek Eliáš, Dayana Salas-Leiva, Emily Herman, Laura Eme, Maria Arias, Bernard Henrissat, Frederique Hilliou, Mary Klute, Hiroshi Suga, Shehre-Banoo Malik, Arthur Pightling, Martin Kolisko, Richard Rachubinski, Alexander Schlacht, Darren Soanes, Anastasios Tsaousis, John Archibald, Steven Ball, Joel B Dacks, C Graham Clark, Mark van Der Giezen, Andrew Roger

PLoS Biology 15:e2003769 (2017)10.1371/journal.pbio.2003769

How a Glycoside Hydrolase Recognizes a Helical Polyglucan

Bernard Henrissat, Marie-Line Garron

Structure 25:1319-1321 (2017)10.1016/j.str.2017.08.004

Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens

J. Uehling, A. Gryganskyi, K. Hameed, T. Tschaplinski, P.K. Misztal, S. Wu, A. Desirò, N. Vande Pol, Z. Du, A. Zienkiewicz, K. Zienkiewicz, E. Morin, E. Tisserant, R. Splivallo, M. Hainaut, Bernard Henrissat, R. Ohm, A. Kuo, J. Yan, A. Lipzen, M. Nolan, K. Labutti, K. Barry, A.H. Goldstein, J. Labbé, C. Schadt, G. Tuskan, I. Grigoriev, F. Martin, R. Vilgalys, G. Bonito

Environmental Microbiology 19:2964-2983 (2017)10.1111/1462-2920.13669

Comparative genomics and transcriptomics for understanding ericoid mycorrhizal fungi ecology

Elena Martino,, Emmanuelle Morin, Gwen-Aëlle Grelet, Annegret Kohler, Stefania Daghino, Claude C. Murat, Bernard Henrissat, I.V. Grigoriev, Francis M. Martin, Silvia Perotto


Characterization of a mycobacterial cellulase and its impact on biofilm- and drug-induced cellulose production

Niël van Wyk, David Navarro, Mickaël Blaise, Jean-Guy Berrin, Bernard Henrissat, Michel Drancourt, Laurent Kremer

Glycobiology 27:392-399 (2017)10.1093/glycob/cwx014

Transcriptomics and experimental proof that compound appressoria are arsenals of Fusarium graminearum

M. Mentges, Anika Glasenapp, Marike J. Boenisch, A.-L. Martínez Rocha, M. Münsterkötter, U. Güldener, Bernard Henrissat, Marc-Henri Lebrun, Jorg Bormann, W. Schaefer

p.238 (2017)

Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels

Weihua Wu, Ryan Davis, Mary Bao Tran-Gyamfi, Alan Kuo, Kurt Labutti, Sirma Mihaltcheva, Hope Hundley, Mansi Chovatia, Erika Lindquist, Kerrie Barry, Igor Grigoriev, Bernard Henrissat, John Gladden

Applied Microbiology and Biotechnology 101:2603-2618 (2017)10.1007/s00253-017-8091-1

Discovery of genes coding for carbohydrate-active enzyme by metagenomic analysis of lignocellulosic biomasses

Salvatore Montella, Valeria Ventorino, Vincent Lombard, Bernard Henrissat, Olimpia Pepe, Vincenza Faraco

Scientific Reports 7:42623 (2017)10.1038/srep42623

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

Ronald P. De Vries, Robert Riley, Ad Wiebenga, Guillermo Aguilar-Osorio, Sotiris Amillis, Cristiane Akemi Uchima, Gregor Anderluh, Mojtaba Asadollahi, Marion Askin, Kerrie Barry, Evy Battaglia, Tiziano Benocci, Susanna A. Braus-Stromeyer, Camila Caldana, David Canovas, Gustavo C. Cerqueira, Fusheng Chen, Wanping Chen, Cindy Choi, Alicia Clum, Renato Augusto Correa Dos Santos, Andre Ricardo De Lima Damasio, George Diallinas, Tamas Emri, Erzsébet Fekete, Michel Flipphi, Susanne Freyberg, Antonia Gallo, Christos Gournas, Rob Habgood, Matthieu Hainaut, Maria Laura Harispe, Bernard Henrissat, Kristiina S. Hilden, Ryan Hope, Abeer Hossain, Eugenia Karabika, Levente Karaffa, Zsolt Karanyi, Nada Krasevec, Alan Kuo, Harald Kusch, Kurt Labutti, Ellen L. Lagendijk, Alla Lapidus, Anthony Levasseur, Erika Lindquist, Anna Lipzen, Antonio F. Logrieco, Andrew Maccabe, Miia R. Makela, Iran Malavazi, Petter Melin, Vera Meyer, Natalia Mielnichuk, Marton Miskei, Akos P. Molnar, Giuseppina Mulé, Chew Yee Ngan, Margarita Orejas, Erzsebet Orosz, Jean Paul Ouedraogo, Karin M. Overkamp, Hee-Soo Park, Giancarlo Perrone, François Piumi, Peter J. Punt, Arthur F. J. Ram, Ana Ramón, Stefan Rauscher, Eric Record, Diego Mauricio Riaño-Pachón, Vincent Robert, Julian Roehrig, Roberto Ruller, Asaf Salamov, Nadhira S. Salih, Rob A. Samson, Erzsébet Sándor, Manuel Sanguinetti, Tabea Schutze, Kristina Sepcic, Ekaterina Shelest, Gavin Sherlock, Vicky Sophianopoulou, Fabiom. Squina, Hui Sun, Antonia Susca, Richard B. Todd, Adrian Tsang, Shiela E. Unkles, Nathalie van De Wiele, Diana Van Rossen-Uffink, Juliana Velasco De Castro Oliveira, Tammi C. Vesth, Jaap Visser, Jae-Hyuk Yu, Miaomiao Zhou, Mikael R. Andersen, David B. Archer, Scott E. Baker, Isabelle Benoit, Axel A. Brakhage, Gerhard H. Braus, Reinhard Fischer, Jens C. Frisvad, Gustavo H. Goldman, Jos Houbraken, Berl Oakley, Istvan Pocsi, Claudio Scazzocchio, Bernhard Seiboth, Patricia A. Vankuyk, Jennifer Wortman, Paul S. Dyer, Igor V. Grigoriev

Genome Biology 18:np (2017)10.1186/s13059-017-1151-0

A parts list for fungal cellulosomes revealed by comparative genomics

Charles H. Haitjema, Sean P. Gilmore, John K. Henske, Kevin V. Solomon, Randall de Groot, Alan Kuo, Stephen J. Mondo, Asaf A. Salamov, Kurt Labutti, Zhiying Zhao, Jennifer Chiniquy, Kerrie Barry, Heather M. Brewer, Samuel O. Purvine, Aaron T. Wright, Matthieu Hainaut, Brigitte Boxma, Theo van Alen, Johannes H. P. Hackstein, Bernard Henrissat, Scott E. Baker, Igor V. Grigoriev, Michelle A. O'Malley

Nature Microbiology 2:17087 (2017)10.1038/nmicrobiol.2017.87

An evolutionarily distinct family of polysaccharide lyases removes rhamnose capping of complex arabinogalactan proteins

Jose Munoz-Munoz, Alan Cartmell, Nicolas Terrapon, Arnaud Basle, Bernard Henrissat, Harry J. Gilbert

Journal of Biological Chemistry 292:13271-13283 (2017)10.1074/jbc.M117.794578

Complex pectin metabolism by gut bacteria reveals novel catalytic functions

Didier Ndeh, Artur Rogowski, Alan Cartmell, Ana S. Luis, Arnaud Basle, Joseph Gray, Immacolata Venditto, Jonathon Briggs, Xiaoyang Zhang, Aurore Labourel, Nicolas Terrapon, Fanny Buffetto, Sergey Nepogodiev, Yao Xiao, Robert A. Field, Yanping Zhu, Malcolm A. O'Neill, Breeanna R. Urbanowicz, William S. York, Gideon J. Davies, D. Wade Abbott, Marie-Christine Ralet-Renard, Eric C. Martens, Bernard Henrissat, Harry J. Gilbert

Nature 544:65-+ (2017)10.1038/nature21725

Unusual active site location and catalytic apparatus in a glycoside hydrolase family

Jose Munoz-Munoz, Alan Cartmell, Nicolas Terrapon, Bernard Henrissat, Harry J. Gilbert

Proceedings of the National Academy of Sciences of the United States of America 114:4936-4941 (2017)10.1073/pnas.1701130114

Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2

Ahmad Ali-Ahmad, Marie-Line Garron, Véronique Roig-Zamboni, Nicolas Lenfant, Didier Nurizzo, Bernard Henrissat, Jean-Guy Berrin, Yves Bourne, Florence Vincent

Journal of Structural Biology 197:227-235 (2017)10.1016/j.jsb.2016.11.004

Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12

Jill Gaskell, Phil Kersten, Luis Larrondo, Paulo Canessa, Diego Martínez, David Hibbett, Monika Schmoll, Christian Kubicek, Angel Martinez, Jagjit Yadav, Emma Master, Jon Karl Magnuson, Debbie Yaver, Randy Berka, Kathleen Lail, Cindy Chen, Kurt Labutti, Matt Nolan, Anna Lipzen, Andrea A. Aerts, Robert Riley, Kerrie Barry, Bernard Henrissat, Robert Blanchette, Igor Grigoriev, Dan Cullen

Genomics Data 14:21-23 (2017)10.1016/j.gdata.2017.08.003

A bioinformatics analysis of 3400 lytic polysaccharide oxidases from family AA9

Nicolas Lenfant, Matthieu Hainaut, Nicolas Terrapon, Elodie Drula, Vincent Lombard, Bernard Henrissat

Carbohydrate Research 448:166-174 (2017)10.1016/j.carres.2017.04.012

A Metagenomics Investigation of Carbohydrate-Active Enzymes along the Gastrointestinal Tract of Saudi Sheep

Saad Al-Masaudi, Abdessamad El Kaoutari, Elodie Drula, Hussein Al-Mehdar, Elrashdy M. Redwan, Vincent Lombard, Bernard Henrissat

Frontiers in Microbiology 8:np (2017)10.3389/fmicb.2017.00666

Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome

Lizi Bensoussan, Sarah Moraïs, Bareket Dassa, Nir Friedman, Bernard Henrissat, Vincent Lombard, Edward Bayer, Itzhak Mizrahi

Environmental Microbiology 19:185-197 (2017)10.1111/1462-2920.13561

Conformational flexibility of PL12 family heparinases: structure and substrate specificity of heparinase III from Bacteroides thetaiotaomicron (BT4657)

Thirumalaiselvi Ulaganathan, Rong Shi, Deqiang Yao, Ruo-Xu Gu, Marie-Line Garron, Maia Cherney, D. Peter Tieleman, Eric Sterner, Guoyun Li, Lingyun Li, Robert J. Linhardt, Miroslaw Cygler

Glycobiology 27:176-187 (2017)10.1093/glycob/cww096

Exploring the genomic diversity of black yeasts and relatives ( Chaetothyriales , Ascomycota )

M. Teixeira, L. Moreno, B. Stielow, A. Muszewska, M. Hainaut, L. Gonzaga, A. Abouelleil, S. Patané, M. Priest, R. Souza, S. Young, S. Ferreira, Q. Zeng, M.M.L. da Cunha, A. Gladki, B. Barker, A. Vicente, E.M. de Souza, S. Almeida, Bernard Henrissat, A. Vasconcelos, S. Deng, H. Voglmayr, A. Moussa, A. Gorbushina, M.S.S. Felipe, C.A. Cuomo, G. Sybren de Hoog

Studies in Mycology 86:1-28 (2017)10.1016/j.simyco.2017.01.001

A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic

Orlane Patrascu, Fabienne Beguet-Crespel, Ludovica Marinelli, Emmanuelle Le Chatelier, Anne-Laure Abraham, Marion Leclerc, Christophe C. Klopp, Nicolas Terrapon, Bernard Henrissat, Hervé Blottiere, Joël Dore, Christel Maillet

Scientific Reports 7:np (2017)10.1038/srep40248

Pan-Cellulosomics of Mesophilic Clostridia: Variations on a Theme

Bareket Dassa, Ilya Borovok, Vincent Lombard, Bernard Henrissat, Raphael Lamed, Edward Bayer, Sarah Moraïs

Microorganisms 5:74 (2017)10.3390/microorganisms5040074

Unique organization and unprecedented diversity of the Bacteroides (Pseudobacteroides) cellulosolvens cellulosome system

Olga Zhivin, Bareket Dassa, Sarah Moraïs, Sagar Utturkar, Steven Brown, Bernard Henrissat, Raphael Lamed, Edward Bayer

Biotechnology for Biofuels 10:211 (2017)10.1186/s13068-017-0898-6

The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi

Mao Peng, Adiphol Dilokpirnol, Miia R. Makela, Kristiina Hilden, Sander Bervoets, Robert Riley, Igor V. Grigoriev, Matthieu Hainaut, Bernard Henrissat, Ronald P. de Vries, Zoraide Granchi

Journal of Biotechnology 246:1-3 (2017)10.1016/j.jbiotec.2017.02.012

Archaea: Essential inhabitants of the human digestive microbiota

Vanessa Demonfort Nkamga, Bernard Henrissat, Michel Drancourt

Human Microbiome Journal 3:1-8 (2017)10.1016/j.humic.2016.11.005

Metabolic roles of uncultivated bacterioplankton lineages in the northern gulf of Mexico "Dead Zone

J. Cameron Thrash, Kiley W. Seitz, Brett J. Baker, Ben Temperton, Lauren E. Gillies, Nancy N. Rabalais, Bernard Henrissat, Olivia U. Mason, Bernard Henrissat

mBio 8 (2017)10.1128/mBio.01017-17

Comparative Metagenomics of Cellulose- and Poplar Hydrolysate-Degrading Microcosms from Gut Microflora of the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus) after Long-Term Enrichment

Mabel Wong, Weijun Wang, Marie Couturier, Fakhria Razeq, Vincent Lombard, Pascal Lapébie, Elizabeth Edwards, Nicolas Terrapon, Bernard Henrissat, Emma Master

Frontiers in Microbiology 8:2504 (2017)10.3389/fmicb.2017.02504

How members of the human gut microbiota overcome the sulfation problem posed by glycosaminoglycans

Alan Cartmell, Elisabeth Lowe, Arnaud Basle, Susan Firbank, Didier Ndeh, Heath Murray, Nicolas Terrapon, Vincent Lombard, Bernard Henrissat, Jeremy E Turnbull, Mirjam Czjzek, Harry Gilbert, David Bolam

Proceedings of the National Academy of Sciences of the United States of America 114:7037-7042 (2017)10.1073/pnas.1704367114

A metagenome-derived thermostable β-glucanase with an unusual module architecture which defines the new glycoside hydrolase family GH148

Angel Angelov, Vu Thuy Trang Pham, Maria Übelacker, Silja Brady, Benedikt Leis, Nicole Pill, Judith Brolle, Matthias Mechelke, Matthias Moerch, Bernard Henrissat, Wolfgang Liebl

Scientific Reports 7:17306 (2017)10.1038/s41598-017-16839-8

Feed in summer, rest in winter: microbial carbon utilization in forest topsoil

Lucia Zifcakova, Tomas Vetrovsky, Vincent Lombard, Bernard Henrissat, Adina Howe, Petr Baldrian

Microbiome 5:np (2017)10.1186/s40168-017-0340-0

CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems

Anne Abot, Grégory Arnal, Lucas Auer, Adèle Lazuka, Delphine Labourdette, Sophie Lamarre, Lidwine Trouilh, Elisabeth Laville, Vincent Lombard, Gabrielle Potocki-Veronese, Bernard Henrissat, Michael O’donohue, Guillermina Hernandez-Raquet, Claire Dumon, Véronique Le Berre

BMC Genomics 17:1-12 (2016)10.1186/s12864-016-2988-4

Metagenomics unveils the attributes of the alginolytic guilds of sediments from four distant cold coastal environments

Marina N. Matos, Mariana Lozada, Luciano E. Anselmino, Matias A. Musumeci, Bernard Henrissat, Janet K. Jansson, Walter P. Mac Cormack, Jolynn Carroll, Sara Sjoling, Leif Lundgren, Hebe M. Dionisi

Environmental Microbiology 18:4471-4484 (2016)10.1111/1462-2920.13433

The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria.

Boyang Ji, Sheng-Da Zhang, Wei-Jia Zhang, Zoe Rouy, François Alberto, Claire-Lise Santini, Sophie Mangenot, Séverine Gagnot, Nadège Philippe, Nathalie Pradel, Lichen Zhang, Sébastien Tempel, Ying Li, Claudine Médigue, Bernard Henrissat, Pedro M Coutinho, Valérie Barbe, Emmanuel Talla, Long-Fei Wu

Environmental Microbiology doi: 10.1111/1462-2920.13637 (2016)10.1111/1462-2920.13637

The complexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition

Immacolata Venditto, Ana S. Luis, Maja G. Rydahl, Julia Schuckel, Vania O. Fernandes, Silvia Vidal Melgosa, Pedro Bule, Arun Goyal, Virginia M. R. Pires, Catarina G. Dourado, Luis M. A. Ferreira, Pedro M Coutinho, Bernard Henrissat, J. Paul Knox, Arnaud Basle, Shabir Najmudin, Harry J. Gilbert, William G. Willats, Carlos M. G. A. Fontes

26:2 p. (2016)

A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility

Mahesh S. Desai, Anna M. Seekatz, Nicole M. Koropatkin, Nobuhiko Kamada, Christina A. Hickey, Mathis Wolter, Nicholas A. Pudlo, Sho Kitamoto, Nicolas Terrapon, Arnaud Muller, Vincent B. Young, Bernard Henrissat, Paul Wilmes, Thaddeus S. Stappenbeck, Gabriel Nunez, Eric C. Martens

Cell 167:1339-1353 (2016)10.1016/j.cell.2016.10.043

CAZyme content of Pochonia chlamydosporia reflects that chitin and chitosan modification are involved in nematode parasitism

Almudena Aranda-Martinez, Nicolas Lenfant, Nuria Escudero, Ernesto A. Zavala-Gonzalez, Bernard Henrissat, Luis V. Lopez-Llorca

Environmental Microbiology 18:4200-4215 (2016)10.1111/1462-2920.13544

Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2

S. Haridas, R. Albert, M. Binder, J. Bloem, Kurt Labutti, A. Salamov, B. Andreopoulos, S.E. Baker, Kerrie Barry, G. Bills, B.H. Bluhm, C. Cannon, R. Castanera, D.E. Culley, C. Daum, D. Ezra, J.B. González, Bernard Henrissat, A. Kuo, C. Liang, Anna Lipzen, F. Lutzoni, J. Magnuson, S.J. Mondo, M. Nolan, R.A. Ohm, J. Pangilinan, H.-J. Park, L. Ramírez, M. Alfaro, H. Sun, A. Tritt, Y. Yoshinaga, L.-H. Zwiers, B.G. Turgeon, S.B. Goodwin, J.W. Spatafora, P.W. Crous, I.V. Grigoriev, Thirumalaiselvi Ulaganathan, Rong Shi, Deqiang Yao, Ruo-Xu Gu, Marie-Line Garron, Maia Cherney, D Peter Tieleman, Eric Sterner, Guoyun Li, Lingyun Li, Robert Linhardt, Miroslaw Cygler, Niël van Wyk, Michel Drancourt, Laurent Kremer, Otto Miettinen, Robert Riley, Dan Cullen, Ronald de Vries, Matthieu Hainaut, Annele Hatakka, Kristiina Hildén, Rita Kuo, Miia Mäkelä, Laura Sandor, Joseph Spatafora, Igor Grigoriev, David Hibbett

Genome Announcements 4:112-122 (2016)10.1128/genomeA.00976-16

Exploration of fungal biodiversity for the deconstruction of lignocellulosic biomass and the implementation of new biosynthetic pathways for green chemistry

Emmanuel Bertrand, Jean-Guy Berrin, Christophe Boyer, Mariane Daou, Michel Delattre, Elodie Drula, Anne Favel, Sacha Grisel, Mireille Haon, Isabelle Gimbert, Laurence Lesage-Meessen, Anne Lomascolo, David Navarro, Sana Raouche, Eric Record, Marie-Noelle Rosso, Jean-Claude Sigoillot, Sabine Taussac, Annick Doan, Craig Faulds

np (2016)

The Mechanism by Which Arabinoxylanases Can Recognize Highly Decorated Xylans

Aurore Labourel, Lucy I. Crouch, Joana L. A. Bras, Adam Jackson, Artur Rogowski, Joseph Gray, Madhav P. Yadav, Bernard Henrissat, Carlos M. G. A. Fontes, Harry J. Gilbert, Shabir Najmudin, Arnaud Basle, Fiona Cuskin

Journal of Biological Chemistry 291:22149-22159 (2016)10.1074/jbc.M116.743948

Erratum: Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi

Stéphane Hacquard, Barbara Kracher, Kei Hiruma, Philipp C. Münch, Ruben Garrido-Oter, Michael R. Thon, Aaron Weimann, Ulrike Damm, Jean-Félix Dallery, Matthieu Hainaut, Bernard Henrissat, Olivier Lespinet, Soledad Sacristán, Emiel Ver Loren van Themaat, Eric Kemen, Alice C. Mchardy, Paul Schulze-Lefert, Richard O'Connell

Nature Communications 7 (2016)10.1038/ncomms13072

Functional exploration of naturally and artificially enriched rumen microbiomes reveals novel enzymatic synergies involved in plant cell wall breakdown

Lisa Ufarté, Elisabeth Laville, Davide Cecchini, Davide Rizzo, Etienne Amblard, Elodie Drula, Bernard Henrissat, M. Cleret, Adèle Lazuka, Guillermina Hernandez Raquet, Diego Morgavi, Claire Dumon, Robe P., Christophe C. Klopp, Sophie Bozonnet, Gabrielle Potocki Veronese


Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi

Stéphane Hacquard, Barbara Kracher, Kei Hiruma, Philipp Münch, Ruben Garrido-Oter, Michael Thon, Aaron Weimann, Ulrike Damm, Jean-Félix Dallery, Matthieu Hainaut, Bernard Henrissat, Olivier Lespinet, Soledad Sacristán, Emiel Ver Loren van Themaat, Eric Kemen, Alice Mchardy, Paul Schulze-Lefert, Richard O'Connell

Nature Communications 7:11362 (2016)10.1038/ncomms11362

Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum

Martina Peter, Annegret Kohler, Robin A. Ohm, Alan Kuo, Jennifer Kruetzmann, Emmanuelle Morin, Matthias Arend, Kerrie W. Barry, Manfred Binder, Cindy Choi, Alicia Clum, Alex Copeland, Nadine Grisel, Sajeet Haridas, Tabea Kipfer, Kurt Labutti, Erika Lindquist, Anna Lipzen, Renaud Maire, Barbara Meier, Sirma Mihaltcheva, Virginie Molinier, Claude Murat, Stefanie Poeggeler, C. Alisha Quandt, Christoph Sperisen, Andrew Tritt, Emilie Tisserant, Pedro W. Crous, Bernard Henrissat, Uwe Nehls, Simon Egli, Joseph W. Spatafora, Igor V. Grigoriev, Francis M. Martin

Nature Communications 7:1-15 (2016)10.1038/ncomms12662

Understanding plant cell-wall remodelling during the symbiotic interaction between Tuber melanosporum and Corylus avellana using a carbohydrate microarray

Fabiano Sillo, Jonatan U. Fangel, Bernard Henrissat, Antonella Faccio, Paola Bonfante, Francis Martin, William G. T. Willats, Raffaella Balestrini

Planta 244:347-359 (2016)10.1007/s00425-016-2507-5

The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals in-sights into the bases of parasitism and virulence

S. Eves-van den Akker, D. R. Laetsch, P. Thorpe, C. J. Lilley, Etienne Danchin, Martine da Rocha, Corinne Rancurel, N. E. Holroyd, J. A. Cotton, A. Szitenberg, Eric Grenier, Josselin Montarry, B. Mimee, M. Duceppe, I. Boyes, J. M. C. Marvin, L. M. Jones, H. B. Yusup, J. Lafond-Lapalme, Magali Esquibet, M. Sabeh, M. Rott, H. Overmars, A. Finkers-Tomczak, G. Smant, G. Koutsovoulos, V. Blok, S. Mantelin, P. J. A. Cock, W. Phillips, Bernard Henrissat, P. E. Urwin, M. Blaxter, J. T. Jones

48:387 p. (2016)

Draft Genome Sequence of the Deep-Sea Basidiomycetous Yeast Cryptococcus sp. Strain Mo29 Reveals Its Biotechnological Potential

V. Redou, A. Kumar, M. Hainaut, Bernard Henrissat, E. Record, G. Barbier, G. Burgaud

Genome Announc 4 (2016)

Functional Exploration of the Polysaccharide Lyase Family PL6

Sophie Mathieu, Bernard Henrissat, Flavien Labre, Gudmund Skjak-Braek, William Helbert

PLoS ONE 11:1-15 (2016)10.1371/journal.pone.0159415

The mucin-degradation strategy of Ruminococcus gnavus: The importance of intramolecular trans-sialidases

E. H. Crost, L. E. Tailford, M. Monestier, D. Swarbreck, Bernard Henrissat, L. C. Crossman, N. Juge

Gut microbes 7:302-312 (2016)

Hemicellulytic potential of invertebrate microbiome for biorefinery

Grégory Arnal, Pablo Alvira, Sophie Bozonnet, Silvia Vidal Melgosa, William G.T Willats, Olga Lefevre - Gherbovet, Régis Fauré, Bernard Henrissat, M. O'Donohue, Claire Dumon


Complexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition

Immacolata Venditto, Ana S. Luis, Maja Rydahl, Julia Schuckel, Vania O. Fernandes, Silvia Vidal-Melgosa, Pedro Bule, Arun Goyal, Virginia M. R. Pires, Catarina G. Dourado, Luis M. A. Ferreira, Pedro M Coutinho, Bernard Henrissat, J. Paul Knox, Arnaud Basle, Shabir Najmudin, Harry J. Gilbert, William G. T. Willats, Carlos M. G. A. Fontes

Proceedings of the National Academy of Sciences of the United States of America 113:7136-7141 (2016)10.1073/pnas.1601558113

Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication

Luis M. Corrochano, Alan Kuo, Marina Marcet-Houben, Silvia Polaino, Asaf Salamov, Jose M. Villalobos-Escobedo, Jane Grimwood, M. Isabel Alvarez, Javier Avalos, Diane Bauer, Ernesto P. Benito, Isabelle Benoit, Gertraud Burger, Lola P. Camino, David Canovas, Enrique Cerda-Olmedo, Jan-Fang Cheng, Angel Dominguez, Marek Elias, Arturo P. Eslava, Fabian Glaser, Gabriel Gutierrez, Joseph Heitman, Bernard Henrissat, Enrique A. Iturriaga, B. Franz Lang, Jose L. Lavin, Soo Chan Lee, Wenjun Li, Erika Lindquist, Sergio Lopez-Garcia, Eva M. Luque, Ana T. Marcos, Joel Martin, Kevin Mccluskey, Humberto R. Medina, Alejandro Miralles-Duran, Atsushi Miyazaki, Elisa Munoz-Torres, Jose A. Oguiza, Robin A. Ohm, Maria Olmedo, Margarita Orejas, Lucila Ortiz-Castellanos, Antonio G. Pisabarro, Julio Rodriguez-Romero, Jose Ruiz-Herrera, Rosa Ruiz-Vazquez, Catalina Sanz, Wendy Schackwitz, Mahdi Shahriari, Ekaterina Shelest, Fatima Silva-Franco, Darren Soanes, Khajamohiddin Syed, Victor G. Tagua, Nicholas J. Talbot, Michael R. Thon, Hope Tice, Ronald P. De Vries, Ad Wiebenga, Jagjit S. Yadav, Edward L. Braun, Scott E. Baker, Victoriano Garre, Jeremy Schmutz, Benjamin A. Horwitz, Santiago Torres-Martinez, Alexander Idnurm, Alfredo Herrera-Estrella, Toni Gabaldon, Igor V. Grigoriev

Current Biology - CB 26:1577-1584 (2016)10.1016/j.cub.2016.04.038

The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

Sebastian Eves-van Den Akker, Dominik R. Laetsch, Peter Thorpe, Catherine J. Lilley, Etienne G. J. Danchin, Martine da Rocha, Corinne Rancurel, Nancy E. Holroyd, James A. Cotton, Amir Szitenberg, Eric Grenier, Josselin Montarry, Benjamin Mimee, Marc-Olivier Duceppe, Ian Boyes, Jessica M. C. Marvin, Laura M. Jones, Hazijah B. Yusup, Joel Lafond-Lapalme, Magali Esquibet, Michael Sabeh, Michael Rott, Hein Overmars, Anna Finkers-Tomczak, Geert Smant, Georgios Koutsovoulos, Vivian Blok, Sophie Mantelin, Peter J. A. Cock, Wendy Phillips, Bernard Henrissat, Peter E. Urwin, Mark Blaxter, John T. Jones

Genome Biology 17:1-23 (2016)10.1186/s13059-016-0985-1

Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis

Jordane Despres, Evelyne Forano, Pascale Lepercq, Sophie Comtet-Marre, Grégory Jubelin, Carl J. Yeoman, Margret E. Berg Miller, Christopher J. Fields, Nicolas Terrapon, Carine Le Bourvellec, Catherine M. G. C. Renard, Bernard Henrissat, Bryan A. White, Pascale Mosoni

BMC Genomics 27 (2016)10.1186/s12864-016-2758-3

Structural and functional characterization of a hypothetical new glycoside hydrolase

Barbara Guyez, Moncassin Franck, Claire Raingeval, Sophie Bozonnet, Bernard Henrissat, L Mourey, Michael O'Donohue, S. Tranier, Claire Dumon


Exploration of the lignocellulolytic potential of invertebrate microbiome

Grégory Arnal, Pablo Alvira, Sophie Bozonnet, Silvia Vidal Melgosa, W. G. T. Willats, R. Faure, Bernard Henrissat, Michael O'Donohue, Claire Dumon


Glycans affect DNA extraction and induce substantial differences in gut metagenomic studies

Emmanouil Angelakis, Dipankar Bachar, Bernard Henrissat, Fabrice Armougom, Gilles Audoly, Jean-Christophe J.-C. Lagier, Catherine Robert, Didier Raoult

Scientific Reports 6 (2016)10.1038/srep26276

Xylan degradation by the human gut Bacteroides xylanisolvens XB1A(T) involves two distinct gene clusters that are linked at the transcriptional level

Jordane Despres, Evelyne Forano, Pascale Lepercq, Sophie Comtet-Marre, Grégory Jubelin, Christophe Chambon, Carl J. Yeoman, Margaret E. Berg Miller, Christopher J. Fields, Eric Martens, Nicolas Terrapon, Bernard Henrissat, Bryan A. White, Pascale Mosoni

BMC Genomics 17 (2016)10.1186/s12864-016-2680-8

New insights from genome and transcriptome analyses of four ericoid mycorrhizal fungi

Elena Martino,, Gwen-Aëlle Grelet, Emmanuelle Morin, Annegret Kohler, Stefania Daghino, Bernard Henrissat, Alan Kuo, Igor V Grigoriev, Francis M. Martin, Silvia Perotto


The molecular basis of polysaccharide cleavage by lytic polysaccharide monooxygenases

Kristian E. H. Frandsen, Thomas J. Simmons, Paul Dupree, Jens-Christian N. Poulsen, Glyn R. Hemsworth, Luisa Ciano, Esther M. Johnston, Morten Tovborg, Katja S. Johansen, Pernille Von Freiesleben, Laurence Marmuse, Sebastien Fort, Sylvain Cottaz, Hugues Driguez, Bernard Henrissat, Nicolas Lenfant, Floriana Tuna, Amgalanbaatar Baldansuren, Gideon J. Davies, Leila Lo Leggio, Paul H. Walton

Nature Chemical Biology 12:298+ (2016)10.1038/NCHEMBIO.2029

Dividing the Large Glycoside Hydrolase Family 43 into Subfamilies: a Motivation for Detailed Enzyme Characterization

Keith Mewis, Nicolas Lenfant, Vincent Lombard, Bernard Henrissat

Applied and Environmental Microbiology 82:1686-1692 (2016)10.1128/AEM.03453-15

MICROBIOME Gut bacteria that prevent growth impairments transmitted by microbiota from malnourished children

Laura V. Blanton, Mark R. Charbonneau, Tarek Salih, Michael J. Barratt, Siddarth Venkatesh, Olga Ilkaveya, Sathish Subramanian, Mark J. Manary, Indi Trehan, Josh M. Jorgensen, Yue-Mei Fan, Bernard Henrissat, Semen A. Leyn, Dmitry A. Rodionov, Andrei L. Osterman, Kennethm. Maleta, Christopher B. Newgard, Per Ashorn, Kathryn G. Dewey, Jeffrey I. Gordon

Science 351:830-U57 (2016)10.1126/science.aad3311

Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi

Carolyn A. Zeiner, Samuel O. Purvine, Erika M. Zink, Ljiljana Pasa-Tolic, Dominique L. Chaput, Sajeet Haridas, Si Wu, Kurt Labutti, Igor V. Grigoriev, Bernard Henrissat, Cara M. Santelli, Colleen M. Hansel

PLoS ONE 11:e0157844 (2016)10.1371/journal.pone.0157844

The Quaternary Structure of a Glycoside Hydrolase Dictates Specificity toward β-Glucans

Mickael Lafond, Gerlind Sulzenbacher, Thibaud Freyd, Bernard Henrissat, Jean-Guy Berrin, Marie-Line Garron

Journal of Biological Chemistry 291:7183-7194 (2016)10.1074/jbc.M115.695999

Single-domain flavoenzymes trigger lytic polysaccharide monooxygenases for oxidative degradation of cellulose

Sona Garajova, Yann Mathieu, Maria Rosa Beccia, Chloé Bennati-Granier, Frédéric Biaso, Mathieu Fanuel, David D. Ropartz, Bruno Guigliarelli, Eric Record, Helene H. Rogniaux-Bonaventure, Bernard Henrissat, Jean-Guy J.-G. Berrin

Scientific Reports 6:Article number: 28276 (2016)10.1038/srep28276

Visual comparative omics of fungi for plant biomass deconstruction

Shingo Miyauchi, David Navarro, Igor V. Grigoriev, Anna Lipzen, Robert Riley, Didier Chevret, Sacha Grisel, Jean-Guy Berrin, Bernard Henrissat, Marie-Noëlle Rosso

Frontiers in Microbiology 7:1335 (2016)10.3389/fmicb.2016.01335

Draft Genome Sequence of the Deep-Sea Ascomycetous Filamentous Fungus Cadophora malorum Mo12 from the Mid-Atlantic Ridge Reveals Its Biotechnological Potential

Rédou V, Kumar A, Matthieu Hainaut, Bernard Henrissat, Record E, Barbier G, Burgaud G.

Genome Announcements 4:e00467-16 (2016)10.1128/genomeA.00467-16

Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors

Firoz Shah, Cesar Nicolas, Johan Bentzer, Magnus Ellstrom, Mark Smits, Francois Rineau, Bjorn Canback, Dimitrios Floudas, Robert Carleer, Gerald Lackner, Jana Braesel, Dirk Hoffmeister, Bernard Henrissat, Dag Ahren, Tomas Johansson, David S. Hibbett, Francis Martin, Per Persson, Anders Tunlid

New Phytologist 209:1705-1719 (2016)10.1111/nph.13722

Composting-Like Conditions Are More Efficient for Enrichment and Diversity of Organisms Containing Cellulase-Encoding Genes than Submerged Cultures

Senta Heiss-Blanquet, Francoise M Fayolle-Guichard, Vincent M Lombard, Agnès M Hébert, Pedro M Coutinho, Alexis Groppi, Aurélien Barré, Bernard Henrissat

PLoS ONE 11:497-497 (2016)10.1371/journal.pone.0167216

Increased Gut Redox and Depletion of Anaerobic and Methanogenic Prokaryotes in Severe Acute Malnutrition

Matthieu Million, Maryam Tidjani Alou, Saber Khelaifia, Dipankar Bachar, Jean-Christophe J.-C. Lagier, Niokhor Dione, Souleymane Brah, Perrine Hugon, Vincent Lombard, Fabrice Armougom, Julien Fromonot, Catherine Robert, Caroline Michelle, Aldiouma Diallo, Alexandre Fabre, Régis Guieu, Cheikh Sokhna, Bernard Henrissat, Philippe Parola, Didier Raoult

Scientific Reports 6:26051 (2016)10.1038/srep26051

Structure-Function Analysis of a Mixed-linkage beta-Glucanase/Xyloglucanase from the Key Ruminal Bacteroidetes Prevotella bryantii B(1)4

Nicholas Mcgregor, Mariya Morar, Thomas Hauch Fenger, Peter Stogios, Nicolas Lenfant, Victor Yin, Xiaohui Xu, Elena Evdokimova, Hong Cui, Bernard Henrissat, Alexei Savchenko, Harry Brumer

Journal of Biological Chemistry 291:1175-1197 (2016)10.1074/jbc.M115.691659

Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles

Markus Schlegel, Martin Munsterktter, Ulrich Guldener, Remy Bruggmann, Angelo Duo, Matthieu Hainaut, Bernard Henrissat, Christian M. K. Sieber, Dirk Hoffmeister, Christoph R. Grunig

BMC Genomics 17:1015 (2016)10.1186/s12864-016-3369-8

Comparative genomic analysis of Drechmeria coniospora reveals core and specific genetic requirements for fungal endoparisitism of nematodes

Lebrigand K., He L.D., Thakur N., Arguel M.J., Polanowska J., Bernard Henrissat, Record E., Ghislaine Magdelenat, Valérie Barbe, Raffaele S., Barbry P., Ewbank J.J

PLoS Genetics 12 (2016)10.1371/journal.pgen.1006017

The genome of Xylona heveae provides a window into fungal endophytism

Romina Gazis, Alan Kuo, Robert Riley, Kurt Labutti, Anna Lipzen, Junyan Lin, Mojgan Amirebrahimi, Cedar N. Hesse, Joseph W. Spatafora, Bernard Henrissat, Matthieu Hainaut, Igor V. Grigoriev, David S. Hibbett

Fungal Biology 120:26-42 (2016)10.1016/j.funbio.2015.10.002

Genome Assembly of the Fungus Cochliobolus miyabeanus, and Transcriptome Analysis during Early Stages of Infection on American Wildrice (Zizania palustris L.)

Claudia V. Castell-Miller, Juan J. Gutierrez-Gonzalez, Zheng Jin Tu, Kathryn E. Bushley, Matthieu Hainaut, Bernard Henrissat, Deborah A. Samac

PLoS ONE 11:e0154122 (2016)10.1371/journal.pone.0154122

Fungal secretomics of ascomycete fungi for biotechnological applications

Marie Couturier, David Navarro, Anne Favel, Mireille Haon, C. Lechat, Laurence Lesage-Meessen, Didier Chevret, Vincent Lombard, Bernard Henrissat, Jean-Guy Berrin

Mycosphere Journal 7:1546-1553 (2016)10.5943/mycosphere/si/3b/6

Draft Genome Sequence of the Deep-Sea Basidiomycetous Yeast Cryptococcus sp. Strain Mo29 Reveals Its Biotechnological Potential.

Rédou V, Kumar A, Hainaut M, Bernard Henrissat, Record E, Barbier G, Burgaud G.

Genome Announcements 4:e00461-16 (2016)10.1128/genomeA.00461-16

Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus

Marie Couturier, David Navarro, Didier Chevret, Bernard Henrissat, François Piumi, Francisco J. Ruiz-Duenas, Angel T. Martinez, Igor V. Grigoriev, Robert Riley, Anna Lipzen, Jean-Guy Berrin, Emma R. Master, Marie-Noelle Rosso

Biotechnology for Biofuels 8 (2015)10.1186/s13068-015-0407-8

Gut microbiota richness promotes its stability upon increased dietary fibre intake in healthy adults

Julien Tap, Jean-Pierre Furet, Martine Bensaada, Catherine Philippe, Hubert Roth, Sylvie Rabot, Omar Lakhdari, Vincent Lombard, Bernard Henrissat, Gerard Corthier, Eric Fontaine, Joel Dore, Marion Leclerc

Environmental Microbiology 17:4954-4964 (2015)10.1111/1462-2920.13006

De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulis Strain LF580 Unravels Life-Style Traits and Anticancerous Scopularide Biosynthetic Gene Cluster

Abhishek Kumar, Bernard Henrissat, Mikko Arvas, Muhammad Fahad Syed, Nils Thieme, J. Philipp Benz, Jens Laurids Sorensen, Eric Record, Stefanie Poeggeler, Frank Kempken

PLoS ONE 10 (2015)10.1371/journal.pone.0140398

Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides

Meng Wu, Nathan P. Mcnulty, Dmitry A. Rodionov, Matvei S. Khoroshkin, Nicholas W. Griffin, Jiye Cheng, Phil Latreille, Randall A. Kerstetter, Nicolas Terrapon, Bernard Henrissat, Andrei L. Osterman, Jeffrey I. Gordon

Science 350 (2015)10.1126/science.aac5992

A Metagenomic Investigation of the Duodenal Microbiota Reveals Links with Obesity

Emmanouil Angelakis, F. Armougom, Frédéric Carrière, Dipankar Bachar, René Laugier, Jean-Christophe J.-C. Lagier, Catherine Robert, Caroline Michelle, Bernard Henrissat, Didier Raoult

PLoS ONE 10 (2015)10.1371/journal.pone.0137784

Functional guild classification predicts the enzymatic role of fungi in litter and soil biogeochemistry

Jennifer M. Talbot, Francis Martin, Annegret Kohler, Bernard Henrissat, Kabir G. Peay

Soil Biology and Biochemistry 88:441-456 (2015)10.1016/j.soilbio.2015.05.006

Unique Organization of Extracellular Amylases into Amylosomes in the Resistant Starch-Utilizing Human Colonic Firmicutes Bacterium Ruminococcus bromii

Xiaolei Ze, Yonit Ben David, Jenny A. Laverde-Gomez, Bareket Dassa, Paul O. Sheridan, Sylvia H. Duncan, Petra Louis, Bernard Henrissat, Nathalie Juge, Nicole M. Koropatkin, Edward A. Bayer, Harry J. Flint

mBio 6 (2015)10.1128/mBio.01058-15

Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts

Guillaume Morel, Lieven Sterck, Dominique Swennen, Marina Marcet-Houben, Djamila Onesime, Anthony Levasseur, Noémie Jacques, Sandrine Mallet, Arnaux Couloux, Karine Labadie, Joëlle Amselem, Jean-Marie Beckerich, Bernard Henrissat, Yves van de Peer, Patrick Wincker, Jean-Luc Souciet, Toni Gabaldón, Colin Tinsley, Serge Casaregola

Scientific Reports 5 (2015)10.1038/srep11571

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Isberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O'Donovan, Kim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier, Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, Ake Vastermark, Gerrit Vriend


Exploration of the lignocellulotytic potential of invertebrate microbiome

Grégory Arnal, Geraldine Bastien-Uluis, Pablo Alvira, Sophie Bozonnet, Sandrine Laguerre, Régis Fauré, Bernard Henrissat, Claire Dumon, M. O'Donohue


Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels

Elsa Petit, Maddalena V. Coppi, James C. Hayes, Andrew C. Tolonen, Thomas Warnick, William G. Latouf, Danielle Amisano, Amy Biddle, Supratim Mukherjee, Natalia Ivanova, Athanassios Lykidis, Miriam Land, Loren Hauser, Nikos Kyrpides, Bernard Henrissat, Joanne Lau, Danny J. Schnell, George M. Church, Susan B. Leschine, Jeffrey L. Blanchard

PLoS ONE (2015)

Glycan complexity dictates microbial resource allocation in the large intestine

Artur Rogowski, Jonathon A. Briggs, Jennifer C. Mortimer, Theodora Tryfona, Nicolas Terrapon, Elisabeth C. Lowe, Arnaud Basle, Carl Morland, Alison M. Day, Hongjun Zheng, Theresa E. Rogers, Paul Thompson, Alastair R. Hawkins, Madhav P. Yadav, Bernard Henrissat, Eric C. Martens, Paul Dupree, Harry J. Gilbert, David N. Bolam

Nature Communications 6 (2015)10.1038/ncomms8481

Key challenges for the creation and maintenance of specialist protein resources

Gemma L. Holliday, Amos Bairoch, Pantelis G. Bagos, Arnaud Chatonnet, David J. Craik, Robert D. Finn, Bernard Henrissat, David Landsman, Gerard Manning, Nozomi Nagano, Claire O'Donovan, Kim D. Pruitt, Neil D. Rawlings, Milton Saier, Ramanathan Sowdhamini, Michael Spedding, Narayanaswamy Srinivasan, Gert Vriend, Patricia C. Babbitt, Alex Bateman

Proteins - Structure, Function and Bioinformatics 83:1005-1013 (2015)10.1002/prot.24803

CAZyChip: a bioChip for bacterial glycoside hydrolases detection and dynamic exploration of microbial diversity for plant cell wall hydrolysis

Anne Abot, Delphine Labourdette, Lidwine Trouilh, Sophie Lamarre, Gabrielle Potocki Veronese, Lucas Auer, Adèle Lazuka, Guillermina Hernandez-Raquet, Bernard Henrissat, Michael O'Donohue, Claire Dumon, Véronique Le Berre-Anton


Structural basis for carbohydrate binding properties of a plant chitinase-like agglutinin with conserved catalytic machinery

Gerlind Sulzenbacher, Veronique Roig-Zamboni, Willy J. Peumans, Bernard Henrissat, Els J. M. Van Damme, Yves Bourne

Journal of Structural Biology 190:115-121 (2015)10.1016/j.jsb.2015.01.013

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

Annegret Kohler, Alan Kuo, Laszlo G Nagy, Emmanuelle Morin, Kerrie W Barry, Francois Buscot, Björn Canbäck, Cindy Choi, Nicolas Cichocki, Alicia Clum, Jan Colpaert, Alex Copeland, Mauricio D Costa, Jeanne Doré, Dimitrios Floudas, Gilles Gay, Mariangela Girlanda, Bernard Henrissat, Sylvie Herrmann, Jaqueline Hess, Nils Högberg, Tomas Johansson, Hassine-Radhouane Khouja, Kurt Labutti, Urs Lahrmann, Anthony Levasseur, Erika A Lindquist, Anna Lipzen, Roland Marmeisse, Elena Martino, Claude Murat, Chew y Ngan, Uwe Nehls, Jonathan M Plett, Anne Pringle, Robin A Ohm, Silvia Perotto, Martina Peter, Robert Riley, Francois Rineau, Joske Ruytinx, Asaf Salamov, Firoz Shah, Hui Sun, Mika Tarkka, Andrew Tritt, Claire Veneault-Fourrey, Alga Zuccaro, Anders Tunlid, Igor V Grigoriev, David S Hibbett, Francis Martin

410-5 (2015)10.1038/ng.3223

Get ready for infection: Transcriptional profiling reveals virulence-specific traits inside of infection cushions of Fusarium graminearum

Jorg Bormann, Marike J. Boenisch, Anika Glasenapp, Ana-Lilia Martinez Rocha, Stefan Scholten, Sebastian Piehler, Martin Münsterkötter, Ulrich Güldener, Bernard Henrissat, Marc-Henri M.-H. Lebrun, Wilhelm Schäfer

p.25 (2015)

Automatic prediction of polysaccharide utilization loci in Bacteroidetes species

Nicolas Terrapon, Vincent Lombard, Harry J. Gilbert, Bernard Henrissat

Bioinformatics 31:647-655 (2015)10.1093/bioinformatics/btu716

Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen

Braham Dhillon, Nicolas Feau, Andrea L. Aerts, Stephanie Beauseigle, Louis Bernier, Alex Copeland, Adam Foster, Navdeep Gill, Bernard Henrissat, Padmini Herath, Kurt M. Labutti, Anthony Levasseur, Erika A. Lindquist, Eline Majoor, Robin A. Ohm, Jasmyn L. Pangilinan, Amadeus Pribowo, John N. Saddler, Monique L. Sakalidis, Ronald P. De Vries, Igor V. Grigoriev, Stephen B. Goodwin, Philippe Tanguay, Richard C. Hamelin

Proceedings of the National Academy of Sciences of the United States of America 112:3451-3456 (2015)10.1073/pnas.1424293112

Insights on the Evolution of Mycoparasitism from the Genome of Clonostachys rosea

Magnus Karlsson, Mikael Brandström Durling, Jaeyoung Choi, Chatchai Kosawang, Gerald Lackner, Georgios D. Tzelepis, Kristiina Nygren, Mukesh K. Dubey, Nathalie Kamou, Anthony Levasseur, Antonio Zapparata, Jinhui Wang, Daniel Buchvaldt Amby, Birgit Jensen, Sabrina Sarrocco, Emmanuel Panteris, Anastasia L. Lagopodi, Stefanie Pöggeler, Giovanni Vannacci, David B. Collinge, Dirk Hoffmeister, Bernard Henrissat, Yong-Hwan Lee, Dan Funck Jensen

Genome Biology and Evolution 7:465-480 (2015)10.1093/gbe/evu292

A glycogene mutation map for discovery of diseases of glycosylation

Lars Hansen, Allan Lind-Thomsen, Hiren J. Joshi, Nis Borbye Pedersen, Christian Theil Have, Yun Kong, Shengjun Wang, Thomas Sparso, Niels Grarup, Malene Bech Vester-Christensen, Katrine Schjoldager, Hudson H. Freeze, Torben Hansen, Oluf Pedersen, Bernard Henrissat, Ulla Mandel, Henrik Clausen, Hans H. Wandall, Eric P. Bennett

Glycobiology 25:211-224 (2015)10.1093/glycob/cwu104

Functional Annotation of the Ophiostoma novo-ulmi Genome: Insights into the Phytopathogenicity of the Fungal Agent of Dutch Elm Disease

André M. Comeau, Josée Dufour, Guillaume F. Bouvet, Volker Jacobi, Martha Nigg, Bernard Henrissat, Jérôme Laroche, Roger C. Levesque, Louis Bernier

Genome Biology and Evolution 7:410-430 (2015)10.1093/gbe/evu281

Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis

Jeanne Dore, Marie Perraud, Cindy Dieryckx, Annegret Kohler, Emmanuelle Morin, Bernard Henrissat, Erika Lindquist, Sabine D. Zimmermann, Vincent Girard, Alan Kuo, Igor V Grigoriev, Francis Martin, Roland Marmeisse, Gilles Gay

New Phytologist 208:1169-1187 (2015)10.1111/nph.13546

Deciphering genome content and evolutionary relationships of isolates from the fungus Magnaporthe oryzae attacking different host plants

Helene Chiapello, Ludovic Mallet, Cyprien Guerin, Gabriela Aguileta, Joelle J. Amselem, Thomas Kroj, Enrique Ortega-Abboud, Marc-Henri Lebrun, Bernard Henrissat, Annie Gendrault, François Rodolphe, Didier Tharreau, Elisabeth Fournier

Genome Biology and Evolution 7:2896-2912 (2015)10.1093/gbe/evv187

Structure and boosting activity of a starch-degrading lytic polysaccharide monooxygenase

Leila Lo Leggio, Thomas J. Simmons, Jens-Christian N. Poulsen, Kristian E. H. Frandsen, Glyn R. Hemsworth, Mary A. Stringer, Pernille Von Freiesleben, Morten Tovborg, Katja S. Johansen, Leonardo de Maria, Paul V. Harris, Chee-Leong Soong, Paul Dupree, Theodora Tryfona, Nicolas Lenfant, Bernard Henrissat, Gideon J. Davies, Paul H. Walton

Nature Communications 6:5961 (2015)10.1038/ncomms6961

Closely related fungi employ diverse enzymatic strategies to degrade plant biomass

Isabelle Benoit, Helena Culleton, Miaomiao Zhou, Marcos Difalco, Guillermo Aguilar‑osorio, Evy Battaglia, Ourdia Bouzid, Carlo P J M Brouwer, Hala B O El‑bushari, Pedro M Coutinho, Birgit S Gruben, Kristiina S Hildén, Jos Houbraken, Luis Alexis Jiménez Barboza, Anthony Levasseur, Eline Majoor, Miia R Mäkelä, Hari‑mander Narang, Blanca Trejo‑aguilar, Joost van den Brink, Patricia A Vankuyk, Ad Wiebenga, Vincent Mckie, Barry Mccleary, Adrian Tsang, Bernard Henrissat, Ronald P de Vries

Biotechnology for Biofuels 8:1-14 (2015)10.1186/s13068-015-0285-0

Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus

Michael H Perlin, Joelle J. Amselem, Eric Fontanillas, Su San Toh, Zehua Chen, Jonathan Goldberg, Sébastien Duplessis, Bernard Henrissat, Sarah Young, Qiandong Zeng, Gabriela Aguileta, Elsa Petit, Helene Badouin, Jared Andrews, Dominique Razeeq, Toni Gabaldón, Hadi Quesneville, Tatiana Giraud, Michael E Hood, David J Schultz, Christina A Cuomo

BMC Genomics 16:np (2015)10.1186/s12864-015-1660-8

The transcriptome of Euglena gracilis reveals unexpected metabolic capabilities for carbohydrate and natural product biochemistry

Ellis C. O'Neill, Martin Trick, Lionel Hill, Martin Rejzek, Renata G. Dusi, Chris J. Hamilton, Paul V. Zimba, Bernard Henrissat, Robert A. Field

Molecular BioSystems 11:2808-2820 (2015)10.1039/c5mb00319a

Structure–function characterization reveals new catalytic diversity in the galactose oxidase and glyoxal oxidase family

Delu (tyler) Yin, Saioa Urresti, Mickael Lafond, Esther M. Johnston, Fatemeh Derikvand, Luisa Ciano, Jean-Guy Berrin, Bernard Henrissat, Paul H. Walton, Gideon J. Davies, Harry Brumer

Nature Communications 6:10197 (2015)10.1038/ncomms10197

Comparative analyses of Podospora anserina secretomes reveal a large array of lignocellulose-active enzymes.

Laetitia Poidevin, Jean-Guy J.-G. Berrin, Chloé Bennati-Granier, Anthony Levasseur, Isabelle Herpoël-Gimbert, Didier Chevret, Pedro M Coutinho, Bernard Henrissat, Senta Heiss-Blanquet, Eric Record

Applied Microbiology and Biotechnology 98:7457-7469 (2014)10.1007/s00253-014-5698-3

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

Robert Riley, Asaf A. Salamov, Daren W. Brown, Laszlo G. Nagy, Dimitrios Floudas, Benjamin W. Held, Anthony Levasseur, Vincent Lombard, Emmanuelle Morin, Robert Otillar, Erika A. Lindquist, Hui Sun, Kurt M. Labutti, Jeremy Schmutz, Dina Jabbour, Hong Luo, Scott E. Baker, Antonio G. Pisabarro, Jonathan D. Walton, Robert A. Blanchette, Bernard Henrissat, Francis Martin, Dan Cullen, David S. Hibbett, Igor V. Grigoriev

Proceedings of the National Academy of Sciences of the United States of America 111:9923-9928 (2014)10.1073/pnas.1400592111

A Novel Unsaturated β-Glucuronyl Hydrolase Involved in Ulvan Degradation Unveils the Versatility of Stereochemistry Requirements in Family GH105

Pi Nyvall Collen, Alexandra Jeudy, Jean-Francois Sassi, Agnès Groisillier, Mirjam Czjzek, Pedro Coutinho, William Helbert

Journal of Biological Chemistry 289:6199-6211 (2014)10.1074/jbc.M113.537480

First Structural Insights into α-l-Arabinofuranosidases from the Two GH62 Glycoside Hydrolase Subfamilies

Béatrice Siguier, Mireille Haon, Virginie Nahoum, Marlène Marcellin, Odile Burlet-Schiltz, Pedro M Coutinho, Bernard Henrissat, Lionel Mourey, Michael O'Donohue, Jean-Guy J.-G. Berrin, Samuel Tranier, Claire Dumon

Journal of Biological Chemistry 289:5261-5273 (2014)10.1074/jbc.M113.528133

Comparative genomic analysis provides insights into the evolution and niche adaptation of marine Magnetospira sp. QH-2 strain

Boyang Ji, Sheng-Da Zhang, Pascal Arnoux, Zoe Rouy, François Alberto, Nadège Philippe, Dorothée Murat, Wei-Jia Zhang, Jean-Baptiste Rioux, Nicolas Ginet, Monique Sabaty, Sophie Mangenot, Nathalie Pradel, Jiesheng Tian, Jing Yang, Lichen Zhang, Wenyan Zhang, Hongmiao Pan, Bernard Henrissat, Pedro M Coutinho, Ying Li, Tian Xiao, Claudine Médigue, Valérie Barbe, David Pignol, Emmanuel Talla, Long-Fei Wu

Environmental Microbiology 16:525-544 (2014)10.1111/1462-2920.12180

Comparative genomics analysis of Lactobacillus species associated with weight gain or weight protection

Fatima Drissi, Vicky Merhej, Emmanouil Angelakis, Abdessamad El Kaoutari, Frédéric Carrière, Bernard Henrissat, Didier Raoult

Nutrition & Diabetes 4:e109-e109 (2014)10.1038/nutd.2014.6

The carbohydrate-active enzymes database (CAZy) in 2013

Bernard Henrissat, Vincent M Lombard, Elodie Drula, Pedro Coutinho, Hemalatha Golaconda Ramulu

Nucleic Acids Research 42:D490-D495 (2014)10.1093/nar/gkt1178

Rumen cellulosomics: divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains

Bareket Dassa, Ilya Borovok, Vered Ruimy-Israeli, Raphael Lamed, Harry J Flint, Sylvia H Duncan, Bernard Henrissat, Pedro Coutinho, Mark Morrison, Pascale Mosoni, Carl J Yeoman, Bryan A White, Edward A Bayer

PLoS ONE 9:e99221 (2014)10.1371/journal.pone.0099221

Structural and biochemical characterization of the β-N-acetylglucosaminidase from Thermotoga maritima: toward rationalization of mechanistic knowledge in the GH73 family

Alexandra Lipski, Mireille Hervé, Vincent Lombard, Didier Nurizzo, Dominique Mengin-Lecreulx, Yves Bourne, Florence Vincent

Glycobiology 25:319-330 (2014)10.1093/glycob/cwu113

Use of specific glycoside phosphorylases for the implementation of phosphorolysis or reverse phosphorolysis reactions

Gabrielle Veronese, Simon Ladeveze, Laurence Tarquis, Elisabeth Laville, Bernard Henrissat, Pierre Monsan

np (2014)

Fast solubilization of recalcitrant cellulosic biomass by the basidiomycete fungus [i]Laetisaria arvalis[/i] involves successive secretion of oxidative and hydrolytic enzymes

David Navarro, Marie-Noelle Rosso, Mireille Haon, Caroline Olivé, Estelle Bonnin, Laurence Lesage-Meessen, Didier Chevret, Pedro M Couthino, Bernard Henrissat, Jean-Guy Berrin

Biotechnology for Biofuels 7:14 p. (2014)10.1186/s13068-014-0143-5

Identification of divergent protein domains by combining HMM-HMM comparisons and co-occurrence detection

Amel Ghouila, Isabelle Florent, Fatma Zahra Guerfali, Nicolas Terrapon, Dhafer Laouini, Sadok Ben Yahia, Olivier Gascuel, Laurent Brehelin

PLoS ONE 9:e95275 (2014)10.1371/journal.pone.0095275

The genome of the white-rot fungus [i]Pycnoporus cinnabarinus[/i]: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown

Anthony Levasseur, Anne Lomascolo, Olivier Chabrol, Francisco J Ruiz-Dueñas, Eva Boukhris-Uzan, François Piumi, Ursula Kües, Arthur F J Ram, Claude Murat-Furminieux, Mireille Haon, Isabelle Benoit, Yonathan Arfi, Didier Chevret, Elodie Drula, Min Jin Kwon, Philippe Gouret, Laurence Lesage-Meessen, Vincent Lombard, Jérôme J. Mariette, Celine Noirot, Joohae Park, Aleksandrina Patyshakuliyeva, Jean-Claude Sigoillot, Ad Wiebenga, Han a B Wösten, Francis Martin, Pedro M Coutinho, Ronald P de Vries, Angel T Martínez, Christophe C. Klopp, Pierre Pontarotti, Bernard Henrissat, Eric Record

BMC Genomics 15:486 (2014)10.1186/1471-2164-15-486

Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment

Claire Veneault-Fourrey, Carine Commun, Annegret Kohler, Emmanuelle Morin, Raffaella Balestrini, Jonathan Michael Plett, Etienne Danchin, Pedro Coutinho, Ad Wiebenga, Ronald P de Vries, Bernard Henrissat, Francis Martin

Fungal Genetics and Biology 72:168-181 (2014)10.1016/j.fgb.2014.08.007

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

Emilie Tisserant, Mathilde Malbreil, Alan Kuo, Annegret Kohler, Aikaterini Symeonidi, Raffaella Balestrini, Philippe Charron, Nina Duensing, Nicolas Frei Dit Frey, Vivienne Gianinazzi-Pearson, Luz B. Gilbert, Yoshihiro Handa, Joshua R. Herr, Mohamed Hijri, Raman Koul, Masayoshi Kawaguchi, Franziska Krajinski, Peter J. Lammers, Frederic G. Masclaux, Claude Murat, Emmanuelle Morin, Steve Ndikumana, Marco Pagni, Denis Petitpierre, Natalia Requena, Pawel Rosikiewicz, Rohan Riley, Katsuharu Saito, Hélène San Clemente, Harris Shapiro, Diederik van Tuinen, Guillaume Bécard, Paola Bonfante, Uta Paszkowski, Yair Y. Shachar-Hill, Gerald A. Tuskan, J. Peter W. Young, Ian R. Sanders, Bernard Henrissat, Stefan A. Rensing, Igor V. Grigoriev, Nicolas Corradi, Christophe Roux, Francis Martin

Proceedings of the National Academy of Sciences of the United States of America 110:20117-20122 (2013)10.1073/pnas.1313452110

Dissecting Partner Recognition by an Intrinsically Disordered Protein Using Descriptive Random Mutagenesis

Antoine Gruet, Marion Dosnon, Andrea Vassena, Vincent Lombard, Denis Gerlier, Christophe Bignon, Sonia Longhi

Journal of Molecular Biology 425:3495-3509 (2013)10.1016/j.jmb.2013.06.025

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

Jean-François Flot, Boris Hespeels, Xiang Li, Benjamin Noel, Irina Arkhipova, Etienne G. J. Danchin, Andreas Hejnol, Bernard Henrissat, Romain Koszul, Jean-Marc Aury, Valerie Barbe, Roxane-Marie Barthelemy, Jens Bast

Nature 500:453-457 (2013)10.1038/nature12326

Mining for lignocellulases in termite using fonctionnal metagenomics.

Sophie Bozonnet, Grégory Arnal, Géraldine Bastien, Sandrine Laguerre, Fernando Ferreira, Régis Fauré, Bernard Henrissat, Fabrice Lefèvre, Patrick Robe, Claire Dumon, Michael J O'Donohue


Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

Anthony Levasseur, Elodie Drula, Vincent Lombard, Pedro M Coutinho, Bernard Henrissat

Biotechnology for Biofuels 6:1-14 (2013)10.1186/1754-6834-6-41

Correction for Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche (vol 109, pg 17501, 2012)

Emmanuelle Morin, Annegret Kohler, Adam R. Baker, Marie Foulongne-Oriol, Julien Lombard, Laszlo G. Nagy, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Annick Brun-Jacob, Andrea L. Aerts, Andrew M. Bailey, Christophe Billette, Pedro M Coutinho, Greg Deakin, Harshavardhan Doddapaneni, Dimitrios Floudas, Jane Grimwood, Kristiina Hildén, Ursula Kües, Kurt M. Labutti, Alla Lapidus, Erika A. Lindquist, Susan M. Lucas, Claude Murat-Furminieux, Robert W. Riley, Asaf A. Salamov, Jeremy Schmutz, Venkataramanan Subramanian, Han A. B. Wösten, Jianping Xu, Daniel C. Eastwood, Gary D. Foster, Anton S. M. Sonnenberg, Dan Cullen, Ronald P. de Vries, Taina Lundell, David S. Hibbett, Bernard Henrissat, Kerry S. Burton, Richard W. Kerrigan, Michael P. Challen, Igor V. Grigoriev, Francis Martin

Proceedings of the National Academy of Sciences of the United States of America 110:4146-4146 (2013)10.1073/pnas.1300201110

Genome of the red alga Porphyridium purpureum

Debashish Bhattacharya, Dana C. Price, Cheong Xin Chan, Huan Qiu, Nicholas Rose, Steven Ball, Andreas P. M. Weber, Maria Cecilia Arias, Bernard Henrissat, Pedro M Coutinho, Anagha Krishnan, Simone Zäuner, Shannon Morath, Frédérique Hilliou, Andrea Egizi, Marie-Mathilde Perrineau, Hwan Su Yoon

Nature Communications 4 (2013)10.1038/ncomms2931

Mining for hemicellulases in the fungus-growing termite Pseudacanthotermes militaris using functional metagenomics

Geraldine Bastien-Uluis, Grégory Arnal, Sophie Bozonnet, Sandrine Laguerre-Gheusi, Fernando Ferreira, Régis Fauré, Bernard Henrissat, Fabrice Lefèvre, Patrick Robe, Olivier Bouchez, Celine Noirot, Claire Dumon, Michael O'Donohue

Biotechnology for Biofuels 6, online:Non paginé (2013)10.1186/1754-6834-6-78

Cello-oligosaccharide oxidation reveals differences between two lytic polysaccharide monooxygenases (family GH61) from Podospora anserina

Mathieu Bey, Simeng Zhou, Laetitia Poidevin, Bernard Henrissat, Pedro M Coutinho, Jean-Guy Berrin, Jean-Claude Sigoillot

Applied and Environmental Microbiology 79:488-496 (2013)10.1128/AEM.02942-12

Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus

Aleksandrina Patyshakuliyeva, Edita Jurak, Annegret Kohler, Adam Baker, Evy Battaglia, Wouter de Bruijn, Kerry S. Burton, Michael P. Challen, Pedro M Coutinho, Daniel C. Eastwood, Birgit S. Gruben, Miia R. Makela, Francis Martin, Marina Nadal, Joost van den Brink, Ad Wiebenga, Miaomiao Zhou, Bernard Henrissat, Mirjam Kabel, Harry Gruppen, Ronald P. de Vries

BMC Genomics 14:np (2013)10.1186/1471-2164-14-663

Development and Validation of a Microarray for the Investigation of the CAZymes Encoded by the Human Gut Microbiome

Abdessamad El Kaoutari, Fabrice Armougom, Quentin Leroy, Bernard Vialettes, Matthieu Million, Didier Raoult, Bernard Henrissat

PLoS ONE 8:e84033 (2013)10.1371/journal.pone.0084033

Insights into exo- and endoglucanase activities of family 6 glycoside hydrolases from Podospora anserina

Laetitia Poidevin, Julia Feliu, Annick Doan, Jean-Guy Berrin, Mathieu Bey, Pedro M Coutinho, Bernard Henrissat, Eric Record, Senta Heiss-Blanquet

Applied and Environmental Microbiology 79:4220-4229 (2013)10.1128/AEM.00327-13

Role of Glycoside Phosphorylases in Mannose Foraging by Human Gut Bacteria

Simon Ladeveze, Laurence Tarquis, Davide Cecchini, Juliette Bercovici, Isabelle André, Christopher Topham, Sandrine Morel, Elisabeth Laville, Pierre Monsan, Vincent Lombard, Bernard Henrissat, Gabrielle Potocki-Veronese

Journal of Biological Chemistry 288:32370-32383 (2013)10.1074/jbc.M113.483628

Characterization of salt-adapted secreted lignocellulolytic enzymes from the mangrove fungus Pestalotiopsis sp

Yonathan Arfi, Didier Chevret, Bernard Henrissat, Jean-Guy Berrin, Anthony Levasseur, Eric Record

Nature Communications 4:1810 (2013)10.1038/ncomms2850

Functional metagenomics reveals novel pathways of prebiotic breakdown by human gut bacteria

Davide Cecchini, Elisabeth Laville, Sandrine Laguerre, Patrick Robe, Marion Leclerc, Joel Dore, Bernard Henrissat, Magali Remaud Simeon, Pierre Monsan, Gabrielle Veronese

PLoS ONE 8:np (2013)10.1371/journal.pone.0072766

Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum.

Nicolas Terrapon, Olivier Gascuel, Eric Marechal, Laurent Brehelin

BMC Bioinformatics 13:67 (2012)10.1186/1471-2105-13-67

Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants.

Maria Cecilia Arias, Etienne G J Danchin, Pedro Coutinho, Bernard Henrissat, Steven Ball

Mobile Genetic Elements 2:81-87 (2012)10.4161/mge.20375

Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis

Marie M. Couturier, David D. Navarro, Caroline Olive-Lauge Olive, Didier D. Chevret, Mireille M. Haon, Anne A. Favel, Laurence L. Lesage-Meessen, Bernard Henrissat, Pedro M Coutinho, Jean-Guy J.-G. Berrin

BMC Genomics 13:1-14 (2012)10.1186/1471-2164-13-57

The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry

Pierre J. G. M. de Wit, Ate van Der Burgt, Bilal Okmen, Ioannis Stergiopoulos, Kamel A. Abd-Elsalam, Andrea L. Aerts, Ali H. Bahkali, Henriek G. Beenen, Pranav Chettri, Murray P. Cox, Erwin Datema, Ronald P. de Vries, Braham Dhillon, Austen R. Ganley, Scott A. Griffiths, Yanan Guo, Richard C. Hamelin, Bernard Henrissat, M. Shahjahan Kabir, Mansoor Karimi Jashni, Gert Kema, Sylvia Klaubauf, Alla Lapidus, Anthony Levasseur, Erika Lindquist, Rahim Mehrabi, Robin A. Ohm, Timothy J. Owen, Asaf Salamov, Arne Schwelm, Elio Schijlen, Hui Sun, Harrold A. van den Burg, Roeland C. H. J. van Ham, Shuguang Zhang, Stephen B. Goodwin, Igor V. Grigoriev, Jerome Collemare, Rosie E. Bradshaw

PLoS Genetics 8:np (2012)10.1371/journal.pgen.1003088

Genome sequence of the model medicinal mushroom Ganoderma lucidum

Shilin Chen, Jiang Xu, Chang Liu, Yingjie Zhu, David R Nelson, Shiguo Zhou, Chunfang Li, Lizhi Wang, Xu Guo, Yongzhen Sun, Hongmei Luo, Ying Li, Jingyuan Song, Bernard Henrissat, Anthony Levasseur, Jun Qian, Jianqin Li, Xiang Luo, Linchun Shi, Liu He, Li Xiang, Xiaolan Xu, Yunyun Niu, Qiushi Li, Mira V Han, Haixia Yan, Jin Zhang, Haimei Chen, Aiping Lv, Zhen Wang, Mingzhu Liu, David C Schwartz, Chao Sun

Nature Communications 3:1-9 (2012)10.1038/ncomms1923

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

Emmanuelle Morin, Annegret Kohler, Adam R. Baker, Marie Foulongne-Oriol, Julien Lombard, Laszlo G. Nagy, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Annick Brun-Jacob, Andrea L. Aerts, Andrew M. Bailey, Christophe Billette, Pedro M Coutinho, Greg Deakin, Harshavardhan Doddapaneni, Dimitrios Floudas, Jane Grimwood, Kristiina Hildén, Ursula Kües, Kurt M. Labutti, Alla Lapidus, Erika A. Lindquist, Susan M. Lucas, Claude Murat-Furminieux, Robert W. Riley, Asaf A. Salamov, Jeremy Schmutz, Venkataramanan Subramanian, Han A. B. Wösten, Jianping Xu, Daniel C. Eastwood, Gary D. Foster, Anton S. M. Sonnenberg, Dan Cullen, Ronald P. de Vries, Taina Lundell, David S. Hibbett, Bernard Henrissat, Kerry S. Burton, Richard W. Kerrigan, Michael P. Challen, Igor V. Grigoriev, Francis Martin

Proceedings of the National Academy of Sciences of the United States of America 109:17501-17506 (2012)10.1073/pnas.1206847109

Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)

Henrik Aspeborg, Pedro M Coutinho, Yang Wang, Harry Brumer, Bernard Henrissat

BMC Evolutionary Biology 12:186 (2012)10.1186/1471-2148-12-186

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

Richard J O'Connell, Michael R Thon, Stéphane Hacquard, Stefan G Amyotte, Jochem Kleeman, Maria F Torres, Ulrike Damm, Ester A Buiate, Lynn Epstein, Noam Alkan, Janine Altmüller, Lucia Alvarado-Balderrama, Christopher A. Bauser, Christian Becker, Bruce W. Birren, Zehua Chen, Jaeyoung Choi, Jo Aann Crouch, Jonathan P. Duvick, Mark A. Farman, Pamela Gan, David Heiman, Bernard Henrissat, Richard J Howard, Mehdi Kabbage, Christian Koch, Barbara Kracher, Yasuyuki Kubo, Audrey D Law, Marc-Henri Lebrun, Yong-Hwan Lee, Itay Miyara, Neil Moore, Ulla Neumann, Karl Nordström, Daniel G Panaccione, Ralph Panstruga, Michael Place, Robert H Proctor, Dov Prusky, Gabriel Rech, Richard Reinhardt, Jeffrey A Rollings, Steve Rounsley, Christopher L Schardl, David C Schwartz, Narmada Shenoy, Ken Shirasu, Usha R Sikhakolli, Kurt Stüber, Serenella A Sukno, James A Sweigard, Yoshitaka Takano, Hiroyuki Takahara, Frances Trail, Charlotte H van Der Does, Lars M Voll, Isa Will, Sarah Young, Qiandong Zeng, Jingze Zhang, Shiguo Zhou, Martin B Dickman, Paul Schulze-Lefert, Emiel Ver Loren van Themaat, Li-Jun Ma, Lisa J Vaillancourt

Nature Genetics 44:1060-1065 (2012)10.1038/ng.2372

Peptidoglycan: a post-genomic analysis.

Caroline Cayrou, Bernard Henrissat, Philippe Gouret, Pierre Pontarotti, Michel Drancourt

BMC Microbiology 12:294 (2012)10.1186/1471-2180-12-294

The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes

Dimitrios Floudas, Manfred Binder, Robert Riley, Kerrie Barry, Robert A. Blanchette, Bernard Henrissat, Angel T. Martínez, Robert Otillar, Joseph W. Spatafora, Jagjit S. Yadav, Andrea Aerts, Isabelle Benoit, Alex Boyd, Alexis Carlson, Alex Copeland, Pedro M Coutinho, Ronald P. de Vries, Patricia Ferreira, Keisha Findley, Brian Foster, Jill Gaskell, Dylan Glotzer, Pawel Górecki, Joseph Heitman, Cedar Hesse, Chiaki Hori, Kiyohiko Igarashi, Joel A. Jurgens, Nathan Kallen, Phil Kersten, Annegret Kohler, Ursula Kües, T. K. Arun Kumar, Alan Kuo, Kurt Labutti, Luis F. Larrondo, Erika Lindquist, Albee Ling, Vincent Lombard, Susan Lucas, Taina Lundell, Rachael Martin, David J. Mclaughlin, Ingo Morgenstern, Emmanuelle Morin, Claude Murat-Furminieux, Laszlo G. Nagy, Matt Nolan, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Antonis Rokas, Francisco J. Ruiz-Dueñas, Grzegorz Sabat, Asaf Salamov, Masahiro Samejima, Jeremy Schmutz, Jason C. Slot, Franz St. John, Jan Stenlid, Hui Sun, Sheng Sun, Khajamohiddin Syed, Adrian Tsang, Ad Wiebenga, Darcy Young, Antonio Pisabarro, Daniel C. Eastwood, Francis Martin, Dan Cullen, Igor V. Grigoriev, David S. Hibbett

Science 336:1715-1719 (2012)10.1126/science.1221748

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.

Ake Olson, Andrea Aerts, Fred Asiegbu, Lassaâd Belbahri, Ourdia Bouzid, Anders Broberg, Björn Canbäck, Pedro M Coutinho, Dan Cullen, Kerstin Dalman, Giuliana Deflorio, Linda T A van Diepen, Christophe Dunand, Sébastien Duplessis, Mikael Durling, Paul Gonthier, Jane Grimwood, Carl Gunnar Fossdal, David Hansson, Bernard Henrissat, Ari Hietala, Kajsa Himmelstrand, Dirk Hoffmeister, Nils Högberg, Timothy y James, Magnus Karlsson, Annegret Kohler, Ursula Kues, Yong-Hwan Lee, Yao-Cheng Lin, Mårten Lind, Erika Lindquist, Vincent Lombard, Susan Lucas, Karl Lundén, Emmanuelle Morin, Claude Murat, Jongsun Park, Tommaso Raffaello, Pierre Rouzé, Asaf Salamov, Jeremy Schmutz, Halvor Solheim, Jerry Ståhlberg, Heriberto Vélëz, Ronald P de Vries, Ad Wiebenga, Steve Woodward, Igor Yakovlev, Matteo Garbelotto, Francis Martin, Igor V. Grigoriev, Jan Stenlid

New Phytologist 194:1001-1013 (2012)10.1111/j.1469-8137.2012.04128.x

Functional analysis of family GH36 α-galactosidases from Ruminococcus gnavus E1: insights into the metabolism of a plant oligosaccharide by a human gut symbiont

M. Cervera-Tison, L. E. Tailford, C. Fuell, L. Bruel, G. Sulzenbacher, Bernard Henrissat, Jean-Guy Berrin, M. Fons, T. Giardina, N. Juge

Applied and Environmental Microbiology 78:7720-7732 (2012)10.1128/AEM.01350-12

Fitting Hidden Markov Models of Protein Domains to a Target Species

Nicolas Terrapon, Olivier Gascuel, Laurent Brehelin

193-194 (2011)

Mimivirus shows dramatic genome reduction after intraamoebal culture

Mickaël Boyer, Saïd Azza, Lina Barrassi, Thomas Klose, Angélique Campocasso, Isabelle Pagnier, Ghislain Fournous, Audrey Borg, Catherine Robert, Xinzheng Zhang, Christelle Desnues, Bernard Henrissat, Michael Rossmann, Bernard La Scola, Didier Raoult

Proceedings of the National Academy of Sciences of the United States of America 108:10296-10301 (2011)

EuPathDomains: The Divergent Domain Database for Eukaryotic Pathogens

Amel Ghouila, Nicolas Terrapon, Olivier Gascuel, Fatma Guerfali, Dhafer Laouini, Eric Marechal, Laurent Brehelin

Infection, Genetics and Evolution 11:698-707 (2011)10.1016/j.meegid.2010.09.008

The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

Daniel C. Eastwood, Dimitrios Floudas, Manfred Binder, Andrzej Majcherczyk, Patrick Schneider, Andrea Aerts, Fred O. Asiegbu, Scott E. Baker, Kerrie Barry, Mika Bendiksby, Melanie Blumentritt, Pedro M Coutinho, Dan Cullen, Ronald P. de Vries, Allen Gathman, Barry Goodell, Bernard Henrissat, Katarina Ihrmark, Havard Kauserud, Annegret Kohler, Kurt Labutti, Alla Lapidus, Jose L. Lavin, Yong-Hwan Lee, Erika Lindquist, Walt Lilly, Susan Lucas, Emmanuelle Morin, Claude Murat, Jose A. Oguiza, Jongsun Park, Antonio G. Pisabarro, Robert Riley, Anna Rosling, Asaf Salamov, Olaf Schmidt, Jeremy Schmutz, Inger Skrede, Jan Stenlid, Ad Wiebenga, Xinfeng Xie, Ursula Kuees, David S. Hibbett, Dirk Hoffmeister, Nils Högberg, Francis Martin, Igor V. Grigoriev, Sarah C. Watkinson

Science 333:762-765 (2011)10.1126/science.1205411

A novel, noncatalytic carbohydrate-binding module displays specificity for galactose-containing polysaccharides through calcium-mediated oligomerization

Cédric Montanier, Márcia a S Correia, James E Flint, Yanping Zhu, Arnaud Baslé, Lauren S Mckee, José a M Prates, Samuel J Polizzi, Pedro M Coutinho, Richard J Lewis, Bernard Henrissat, Carlos M G A Fontes, Harry J Gilbert

Journal of Biological Chemistry 286:22499-509 (2011)10.1074/jbc.M110.217372

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.

Christian Kubicek, Alfredo Herrera-Estrella, Verena Seidl-Seiboth, Diego Martinez, Irina Druzhinina, Michael Thon, Susanne Zeilinger, Sergio Casas-Flores, Benjamin Horwitz, Prasun Mukherjee, Mala Mukherjee, László Kredics, Luis Alcaraz, Andrea A. Aerts, Zsuzsanna Antal, Lea Atanasova, Mayte Cervantes-Badillo, Jean Challacombe, Olga Chertkov, Kevin Mccluskey, Fanny Coulpier, Nandan Deshpande, Hans von Döhren, Daniel Ebbole, Edgardo Esquivel-Naranjo, Erzsébet Fekete, Michel Flipphi, Fabian Glaser, Elida Gómez-Rodríguez, Sabine Gruber, Cliff Han, Bernard Henrissat, Rosa Hermosa, Miguel Hernández-Oñate, Levente Karaffa, Idit Kosti, Stéphane Le Crom, Erika Lindquist, Susan Lucas, Mette Lübeck, Peter Lübeck, Antoine Margeot, Benjamin Metz, Monica Misra, Helena Nevalainen, Markus Omann, Nicolle Packer, Giancarlo Perrone, Edith Uresti-Rivera, Asaf Salamov, Monika Schmoll, Bernhard Seiboth, Harris Shapiro, Serenella Sukno, Juan Antonio Tamayo-Ramos, Doris Tisch, Aric Wiest, Heather Wilkinson, Michael Zhang, Pedro Coutinho, Charles Kenerley, Scott Baker, Igor Grigoriev

Genome Biology 12:R40 (2011)10.1186/gb-2011-12-4-r40

Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

Joelle J. Amselem, Christina A. Cuomo, Jan A. L. van Kan, Muriel Viaud, Ernesto P. Benito, Arnaud Couloux, Pedro M Coutinho, Ronald P. de Vries, Paul S. Dyer, Sabine, Helma Fillinger-David, Elisabeth Fournier, Lilian Gout, Matthias Hahn, Linda Kohn, Nicolas Lapalu, Kim M. Plummer, Jean-Marc Pradier, Emmanuel Quevillon, Amir Sharon, Adeline Simon, Arjen ten Have, Bettina Tudzynski, Paul Tudzynski, Patrick Wincker, Marion Andrew, Véronique Anthouard, Ross E. Beever, Rolland Beffa, Isabelle Benoit, Ourdia Bouzid, Baptiste Brault, Zehua Chen, Mathias Choquer, Jerome Collemare, Pascale Cotton, Etienne Danchin, Corinne da Silva, Angelique Gautier, Corinne Giraud-Delville, Tatiana Giraud, Celedonio Gonzalez, Sandrine Grossetete, Ulrich Gueldener, Bernard Henrissat, Barbara J. Howlett, Chinnappa Kodira, Matthias Kretschmer, Anne Lappartient, Michaela Leroch, Caroline Levis, Evan Mauceli, Cécile Neuvéglise, Birgitt Oeser, Matthew Pearson, Julie Poulain, Nathalie Poussereau, Hadi Quesneville, Christine Rascle, Julia Schumacher, Béatrice Segurens, Adrienne Sexton, Evelyn Silva, Catherine Sirven, Darren M. Soanes, Nicholas J. Talbot, Matt Templeton, Chandri Yandava, Oded Yarden, Qiandong Zeng, Jeffrey A. Rollins, Marc-Henri Lebrun, Marty Dickman

PLoS Genetics 7:np (2011)10.1371/journal.pgen.1002230

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Sébastien Duplessis, Christina A C. A. Cuomo, Yao-Cheng Y.-C. Lin, Andrea Aerts, Emilie Tisserant, Claire Veneault-Fourrey, David L. Joly, Stéphane S. Hacquard, Joelle Amselem, Brandi B. Cantarel, Readman R. Chin, Pedro M Coutinho, Nicolas N. Feau, Matthew M. Field, Pascal Frey, Éric Gelhaye, Jonathan J. Goldberg, Manfred G M. G. Grabherr, Chimappa D C. D. Kodira, Annegret Kohler, Ursula U. Kues, Erika A E. A. Lindquist, Susan S. Lucas, Rohit R. Mago, Evan E. Mauceli, Emmanuelle Morin, Claude C. Murat, Jasmyn J. J. J. Pangilinan, Robert R. Park, Matthew M. Pearson, Hadi H. Quesneville, Nicolas Rouhier, Sharadha Sakthikumar, Asaf A A. A. Salamov, Jeremy J. Schmutz, Benjamin B. Selles, Harris Shapiro, Philippe P. Tanguay, Gerald A G. A. Tuskan, Bernard Henrissat, Yves Y. van de Peer, Pierre P. Rouze, Jeffrey G. J. G. Ellis, Peter N P. N. Dodds, Jacqueline E. J. E. Schein, Shaobin S. Zhong, Richard C R. C. Hamelin, Igor V I. V. Grigoriev, Les J L. J. Szabo, Francis Martin

Proceedings of the National Academy of Sciences of the United States of America 108:9166-9171 (2011)10.1073/pnas.1019315108

Mycobacterium tuberculosis Complex Mycobacteria as Amoeba-Resistant Organisms

Felix Mba Medie, Iskandar Ben Salah, Bernard Henrissat, Didier Raoult, Michel Drancourt

PLoS ONE 6:e20499 (2011)10.1371/journal.pone.0020499

Podospora anserina hemicellulases potentiate Trichoderma reesei secretome for the saccharification of lignocellulosic biomass

Marie Couturier, Mireille M. Haon, Pedro M Coutinho, Laurence Lesage-Meessen, Jean-Guy Berrin, Bernard Henrissat

Applied and Environmental Microbiology 77:237-246 (2011)10.1128/AEM.01761-10

The cyst-dividing bacterium Ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment.

Gilles de Luca, ​mohamed Barakat, Philippe Ortet, Sylvain Fochesato, Cécile Jourlin-Castelli, Mireille Ansaldi, Béatrice Py, Gwennaele Fichant, Pedro M Coutinho, Romé Voulhoux, Olivier Bastien, Eric Maréchal, Bernard Henrissat, Yves Quentin, Philippe Noirot, Alain Filloux, Vincent Méjean, Michael S Dubow, Frédéric Barras, Valérie Barbe, Jean Weissenbach, Irina Mihalcescu, André Verméglio, Wafa Achouak, Thierry Heulin

PLoS ONE 6:e23784 (2011)10.1371/journal.pone.0023784

Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen

Scott Diguistini, Ye Wang, Nancy Y. Liao, Greg Taylor, Philippe Tanguay, Nicolas Feau, Bernard Henrissat, Simon K. Chan, Uljana Hesse-Orce, Sepideh Massoumi Alamouti, Clement K. M. Tsui, Roderick T. Docking, Anthony Levasseur, Sajeet Haridas, Gordon Robertson, Inanç Birol, Robert A. Holt, Marco A. Marra, Richard C. Hamelin, Martin Hirst, Steven J.M. Jones, Jörg Bohlmann, Colette Breuil

Proceedings of the National Academy of Sciences of the United States of America 108:2504-2509 (2011)10.1073/pnas.1011289108

A hierarchical classification of polysaccharide lyases for glycogenomics

Vincent Lombard, Thomas Bernard, Corinne Rancurel, Harry Brumer, Pedro M Coutinho, Bernard Henrissat

Biochemical Journal 432:437-444 (2010)10.1042/BJ20101185

Genome sequence of the model mushroom Schizophyllum commune

Robin Ohm, Jan de Jong, Luis Lugones, Andrea Aerts, Erika Kothe, Jason Stajich, Ronald de Vries, Eric Record, Anthony Levasseur, Scott Baker, Kirk Bartholomew, Pedro Coutinho, Susann Erdmann, Thomas Fowler, Allen Gathman, Vincent Lombard, Bernard Henrissat, Nicole Knabe, Ursula Kües, Walt Lilly, Erika Lindquist, Susan Lucas, Jon Magnuson, François Piumi, Marjatta Raudaskoski, Asaf Salamov, Jeremy Schmutz, Francis Schwarze, Patricia Vankuyk, J Stephen Horton, Igor Grigoriev, Han Wösten

Nature Biotechnology 28:957-963 (2010)10.1038/nbt.1643

Structure of a polyisoprenoid binding domain from Saccharophagus degradans implicated in plant cell wall breakdown

Florence Vincent, David Dal Molin, Ronald Weiner, Yves Bourne, Bernard Henrissat

FEBS Letters 584:1577-1584 (2010)10.1016/j.febslet.2010.03.015

Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

C André Lévesque, Henk Brouwer, Liliana Cano, John P Hamilton, Carson Holt, Edgar Huitema, Sylvain Raffaele, Gregg P Robideau, Marco Thines, Joe Win, Marcelo M Zerillo, Gordon W Beakes, Jeffrey L Boore, Dana Busam, Bernard Dumas, Steve Ferriera, Susan I Fuerstenberg, Claire M M Gachon, Elodie Gaulin, Francine Govers, Laura Grenville-Briggs, Neil Horner, Jessica Hostetler, Rays H y Jiang, Justin Johnson, Theerapong Krajaejun, Haining Lin, Harold J G Meijer, Barry Moore, Paul Morris, Vipaporn Phuntmart, Daniela Puiu, Jyoti Shetty, Jason E Stajich, Sucheta Tripathy, Stephan Wawra, Pieter van West, Brett R Whitty, Pedro M Coutinho, Bernard Henrissat, Frank Martin, Paul D Thomas, Brett M Tyler, Ronald P de Vries, Sophien Kamoun, Mark Yandell, Ned Tisserat, C Robin Buell

Genome Biology 11:np (2010)10.1186/gb-2010-11-7-r73

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

Li-Jun Ma, Charlotte van Der Does, Katherine A. Borkovich, Jeffrey J. Coleman, Marie-José Daboussi, Antonio Di Pietro, Marie Dufresne, Michael Freitag, Manfred Grabherr, Bernard Henrissat, Petra M. Houterman, Seogchan Kang, Won-Bo Shim, Charles Woloshuk, Xiaohui Xie, Jin-Rong Xu, John Antoniw, Scott E. Baker, Burton H. Bluhm, Andrew Breakspear, Daren W. Brown, Robert A. E. Butchko, Sinead Chapman, Richard Coulson, Pedro M Coutinho, Etienne Danchin, Andrew Diener, Liane R. Gale, Donald M. Gardiner, Stephen Goff, Kim E. Hammond-Kosack, Karen Hilburn, Aurelie Hua-Van, Wilfried Jonkers, Kemal Kazan, Chinnappa D. Kodira, Michael Koehrsen, Lokesh Kumar, Yong-Hwan Lee, Liande Li, John M. Manners, Diego Miranda-Saavedra, Mala Mukherjee, Gyungsoon Park, Jongsun Park, Sook-Young Park, Robert H. Proctor, Aviv Regev, Carmen Ruiz-Roldan, Divya Sain, Sharadha Sakthikumar, Sean Sykes, David C. Schwartz, B. Gillian Turgeon, Ilan Wapinski, Olen Yoder, Sarah Young, Qiandong Zeng, Shiguo Zhou, James Galagan, Christina A. Cuomo, H. Corby Kistler, Martijn Rep

Nature 464:367-373 (2010)10.1038/nature08850

Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes

Etienne Danchin, Marie-Noelle Rosso, Paulo Vieira, Janice de Almeida-Engler, Pedro M Coutinho, Bernard Henrissat, Pierre Abad

Proceedings of the National Academy of Sciences of the United States of America 107:17651-17656 (2010)

A novel α-N-acetylgalactosaminidase family with an NAD+-dependent catalytic mechanism suitable for enzymatic removal of blood group A antigens

Gerlind Sulzenbacher, Qiyong Peter Liu, Eric P Bennett, Steven B Levery, Yves Bourne, Guillaume Ponchel, Henrik Clausen, Bernard Henrissat

Biocatalysis and Biotransformation 28:22-32 (2010)10.3109/10242420903424259

Signature active site architectures illuminate the molecular basis for ligand specificity in family 35 carbohydrate binding module

Márcia a S Correia, D Wade Abbott, Tracey M Gloster, Vânia O Fernandes, José a M Prates, Cédric Montanier, C. Dumon, Michael P Williamson, Richard B Tunnicliffe, Ziyuan Liu, James E Flint, Gideon J Davies, Bernard Henrissat, Pedro M Coutinho, Carlos M G A Fontes, Harry J Gilbert

Biochemistry 49:6193-6205 (2010)10.1021/bi1006139

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

Francis Martin, Annegret Kohler, Claude Murat, Raffaella Balestrini, Pedro M Coutinho, Olivier Jaillon, Barbara Montanini, Emmanuelle Morin, Benjamin Noel, Riccardo Percudani, Betina M Porcel, Andrea Rubini, Antonella Amicucci, Joelle Amselem, Véronique Anthouard, Sergio Arcioni, François Artiguenave, Jean-Marc Aury, Paola Ballario, Angelo Bolchi, Andrea Brenna, Annick Brun, Marc Buée, Brandi Cantarel, Gérard Chevalier, Arnaud Couloux, Corinne da Silva, France Denoeud, Sébastien Duplessis, Stefano Ghignone, Benoît Hilselberger, Mirco Iotti, Benoit Marçais, Antonietta Mello, Michele Miranda, Giovanni Pacioni, Hadi Quesneville, Claudia Riccioni, Roberta Ruotolo, Richard Splivallo, Vilberto Stocchi, Emilie Tisserant, Arturo Roberto Viscomi, Alessandra Zambonelli, Elisa Zampieri, Bernard Henrissat, Marc-Henri Lebrun, Francesco Paolocci, Paola Bonfante, Simone Ottonello, Patrick Wincker

Nature 464:1033-1038 (2010)10.1038/nature08867

Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes

Lena Tasse, Juliette Bercovici, Sandra Pizzut-Serin, Patrick Robe, Julien Tap, Christophe C. Klopp, Brandi L. Cantarel, Pedro M Coutinho, Bernard Henrissat, Marion Leclerc, Joel Dore, Pierre Monsan, Magali Remaud Simeon, Gabrielle Potocki-Veronese

Genome Research 20:1605-1612 (2010)10.1101/gr.108332.110

Detection of new protein domains using co-occurrence: application to Plasmodium falciparum

Nicolas Terrapon, Olivier Gascuel, Eric Maréchal, Laurent Brehelin

Bioinformatics 25:3077-83 (2009)10.1093/bioinformatics/btp560

Détection de nouveaux domaines protéiques par co-occurence : Application à P. falciparum

Nicolas Terrapon, Olivier Gascuel, Laurent Brehelin

43-48 (2009)

Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.

Alexandra Z Worden, Jae-Hyeok Lee, Thomas Mock, Pierre Rouzé, Melinda P Simmons, Andrea L Aerts, Andrew E Allen, Marie L Cuvelier, Evelyne Derelle, Meredith V Everett, Elodie Foulon, Jane Grimwood, Heidrun Gundlach, Bernard Henrissat, Carolyn Napoli, Sarah M Mcdonald, Micaela S Parker, Stephane Rombauts, Aasf Salamov, Peter von Dassow, Jonathan H Badger, Pedro M Coutinho, Elif Demir, Inna Dubchak, Chelle Gentemann, Wenche Eikrem, Jill E Gready, Uwe John, William Lanier, Erika A Lindquist, Susan Lucas, Klaus F X Mayer, Herve Moreau, Fabrice Not, Robert Otillar, Olivier Panaud, Jasmyn Pangilinan, Ian Paulsen, Benoit Piegu, Aaron Poliakov, Steven Robbens, Jeremy Schmutz, Eve Toulza, Tania Wyss, Alexander Zelensky, Kemin Zhou, E Virginia Armbrust, Debashish Bhattacharya, Ursula W Goodenough, Yves van de Peer, Igor V Grigoriev

Science 324:268-72 (2009)10.1126/science.1167222

Tropheryma whipplei glycosylation in the pathophysiologic profile of Whipple's disease.

Cyrille J Bonhomme, Patricia Renesto, Benoît Desnues, Eric Ghigo, Hubert Lepidi, Patrick Fourquet, Florence Fenollar, Bernard Henrissat, Jean-Louis Mege, Didier Raoult

Journal of Infectious Diseases 199:1043-52 (2009)10.1086/597277

The 2008 update of the Aspergillus nidulans genome annotation: a community effort.

Jennifer Russo Wortman, Jane Mabey Gilsenan, Vinita Joardar, Jennifer Deegan, John Clutterbuck, Mikael R Andersen, David Archer, Mojca Bencina, Gerhard Braus, Pedro Coutinho, Hans von Döhren, John Doonan, Arnold J M Driessen, Pawel Durek, Eduardo Espeso, Erzsébet Fekete, Michel Flipphi, Carlos Garcia Estrada, Steven Geysens, Gustavo Goldman, Piet W J de Groot, Kim Hansen, Steven D Harris, Thorsten Heinekamp, Kerstin Helmstaedt, Bernard Henrissat, Gerald Hofmann, Tim Homan, Tetsuya Horio, Hiroyuki Horiuchi, Steve James, Meriel Jones, Levente Karaffa, Zsolt Karányi, Masashi Kato, Nancy Keller, Diane E Kelly, Jan a K W Kiel, Jung-Mi Kim, Ida J van Der Klei, Frans M Klis, Andriy Kovalchuk, Nada Krasevec, Christian P Kubicek, Bo Liu, Andrew Maccabe, Vera Meyer, Pete Mirabito, Márton Miskei, Magdalena Mos, Jonathan Mullins, David R Nelson, Jens Nielsen, Berl R Oakley, Stephen A Osmani, Tiina Pakula, Andrzej Paszewski, Ian T. Paulsen, Sebastian Pilsyk, István Pócsi, Peter J Punt, Arthur F J Ram, Qinghu Ren, Xavier Robellet, Geoff Robson, Bernhard Seiboth, Piet van Solingen, Thomas Specht, Jibin Sun, Naimeh Taheri-Talesh, Norio Takeshita, Dave Ussery, Patricia A Vankuyk, Hans Visser, Peter J I van de Vondervoort, Ronald P de Vries, Jonathan Walton, Xin Xiang, Yi Xiong, an Ping Zeng, Bernd W Brandt, Michael J Cornell, Cees a M J J van den Hondel, Jacob Visser, Stephen G Oliver, Geoffrey Turner

Fungal Genetics and Biology 46 Suppl 1:S2-13 (2009)10.1016/j.fgb.2008.12.003

The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion

Jeffrey J. Coleman, Steve D. Rounsley, Marianela Rodriguez-Carres, Alan Kuo, Catherine C. Wasmann, Jane Grimwood, Jeremy Schmutz, Masatoki Taga, Gerard J. White, Shiguo Zhou, David C. Schwartz, Michael Freitag, Li-Jun Ma, Etienne Danchin, Bernard Henrissat, Pedro M Coutinho, David R. Nelson, Dave Straney, Carolyn A. Napoli, Bridget M. Barker, Michael Gribskov, Martijn Rep, Scott Kroken, István Molnár, Christopher Rensing, John C. Kennell, Jorge Zamora, Mark L. Farman, Eric U. Selker, Asaf Salamov, Harris Shapiro, Jasmyn Pangilinan, Erika Lindquist, Casey Lamers, Igor V. Grigoriev, David M. Geiser, Sarah F. Covert, Esteban Temporini, Hans D. Vanetten

PLoS Genetics 5:e1000618 (2009)

Glycosyltransferases, glycoside hydrolases: surprise, surprise!

Bernard Henrissat, Gerlind Sulzenbacher, Yves Bourne

Current Opinion in Structural Biology (2008)10.1016/j.sbi.2008.09.003

Complete Genome Sequence of the Complex Carbohydrate-Degrading Marine Bacterium, Saccharophagus degradans Strain 2-40T

Ronald Weiner, Larry Taylor, Bernard Henrissat, Loren Hauser, Miriam Land, Pedro Coutinho, Corinne Rancurel, Elizabeth Saunders, Atkinson Longmire, Haitao Zhang, Edward Bayer, Harry Gilbert, Frank Larimer, Igor Zhulin, Nathan Ekborg, Raphael Lamed, Paul Richardson, Ilya Borovok, Steven Hutcheson

PLoS Genetics 4:e1000087 (2008)10.1371/journal.pgen.1000087

The genome sequence of the model ascomycete fungus Podospora anserina.

Eric Espagne, Olivier Lespinet, Fabienne Malagnac, Corinne da Silva, Olivier Jaillon, Betina Porcel, Arnaud Couloux, Jean-Marc Aury, Béatrice Ségurens, Julie Poulain, Véronique Anthouard, Sandrine Grossetete, Hamid Khalili, Evelyne Coppin, Michelle Déquard-Chablat, Marguerite Picard, Véronique Contamine, Sylvie Arnaise, Anne Bourdais, Véronique Berteaux-Lecellier, Daniel Gautheret, Ronald de Vries, Evy Battaglia, Pedro Coutinho, Etienne G. J. Danchin, Bernard Henrissat, Riyad Khoury, Annie Sainsard-Chanet, Antoine Boivin, Bérangère Pinan-Lucarré, Carole Sellem, Robert Debuchy, Patrick Wincker, Jean Weissenbach, Philippe Silar

Genome Biology 9:R77 (2008)10.1186/gb-2008-9-5-r77

FOLy: An integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds

Anthony Levasseur, François Piumi, Pedro M Coutinho, Corinne Rancurel, Michèle Asther, Michel Delattre, Bernard Henrissat, Pierre Pontarotti, Marcel M. Asther, Eric Record

Fungal Genetics and Biology 45:638-645 (2008)10.1016/j.fgb.2008.01.004

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

Pierre Abad, Jerome Gouzy, Jean-Marc Aury, Philippe Castagnone-Sereno, Etienne Danchin, Emeline Deleury, Laetitia Perfus-Barbeoch, Véronique Anthouard, François Artiguenave, Vivian C. Blok, Marie-Cécile Caillaud, Pedro M Coutinho, Corinne da Silva, Francesca de Luca, Florence Deau, Magali Esquibet, Timothée Flutre, Jared V. Goldstone, Noureddine Hamamouch, Tarek Hewezi, Olivier Jaillon, Claire Jubin, Paola Leonetti, Marc Magliano, Tom R. Maier, Gabriel V Markov, Paul Mcveigh, Graziano Pesole, Julie Poulain, Marc Robinson-Rechavi, Erika Sallet, Béatrice Ségurens, Delphine Steinbach, Tom Tytgat, Edgardo Ugarte, Cyril van Ghelder, Pasqua Veronico, Thomas J. Baum, Mark Blaxter, Teresa Bleve-Zacheo, Eric L. Davis, J.J. Ewbank, Bruno Favery, Eric Grenier, Bernard Henrissat, John T. Jones, Vincent Laudet, Aaron G. Maule, Hadi Quesneville, Marie-Noelle Rosso, Thomas Schiex, Geert Smant, Jean Weissenbach, Patrick Wincker

Nature Biotechnology 26:909-915 (2008)10.1038/nbt.1482

Identification of a GH110 Subfamily of ␣1,3-Galactosidases: NOVEL ENZYMES FOR REMOVAL OF THE ␣3GAL XENOTRANSPLANTATION ANTIGEN

Qiyong P Liu, Huaiping Yuan, Eric P Bennett, Steven B Levery, Edward Nudelman, Jean Spence, Greg Pietz, Kristen Saunders, Thayer White, Martin L Olsson, Bernard Henrissat, Gerlind Sulzenbacher, Henrik Clausen

Journal of Biological Chemistry 283:8545-8554 (2008)10.1074/jbc.M709020200

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

F. Martin, A. Aerts, D. Ahrén, A. Brun, E. G. J. Danchin, F. Duchaussoy, J. Gibon, Annegret Kohler, E. Lindquist, V. Pereda, A. Salamov, H. J. Shapiro, J. Wuyts, D. Blaudez, Marc Buée, P. Brokstein, B. Canbäck, D. Cohen, P. E. Courty, P. M. Coutinho, C. Delaruelle, J. C. Detter, Aurélie Deveau, S. Difazio, Sébastien Duplessis, L. Fraissinet-Tachet, E. Lucic, P. Frey-Klett, Claire Veneault-Fourrey, I. Feussner, G. Gay, J. Grimwood, P. J. Hoegger10, P. Jain, S. Kilaru, J. Labbé, Y. C. Lin, V. Legué, F. Le Tacon, R. Marmeisse, D. Melayah, B. Montanini, M. Muratet, U. Nehls, H. Niculita-Hirzel, M. P. Oudot-Le Secq, M. Peter, H. Quesneville, B. Rajashekar, M. Reich, N. Rouhier, J. Schmutz, T. Yin, M. Chalot, Bernard Henrissat, U. Kües, S. Lucas, Y. van de Peer, G. K. Podila, A. Polle, P. J. Pukkila, P. M. Richardson, P. Rouzé, I. R. Sanders, J. E. Stajich, A. Tunlid, G. Tuskan, I. V. Grigoriev

Nature 452:88-93 (2008)10.1038/nature06556

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

Diego Martínez, Randy Berka, Bernard Henrissat, Markku Saloheimo, Mikko Arvas, Scott Bakker, Jarod Chapman, Olga Chertkov, Pedro Coutinho, Dan Cullen, Etienne Danchin, Igor Grigoriev, Paul Harris, Melissa Jackson, Christian Kubicek, Cliff Han, Isaac Ho, Luis Larrondo, Alfredo Lopez de Leon, Jon Magnuson, Sandy Merino, Monica Misra, Beth Nelson, Nicholas Putman, Barbara Robbertse, Asaf Salamov, Monika Schmoll, Astrid Terry, Nina Thayer, Ann Westerholm-Parvinen, Conrad Schoch, Jian Yao, Ravi Barabote, Mary Anne Nelson, Chris Detter, David Bruce, Cheryl Kuske, Gary Xie, Paul Richardson, Daniel Rokhsar, Susan Lucas, Edward Rubin, Nigel Dunn-Coleman, Michael Ward, Thomas Brettin

Nature Biotechnology 26:553-560 (2008)10.1038/nbt1403

The genome sequence of the model ascomycete fungus Podospora anserina

Eric Espagne, Olivier Lespinet, Fabienne Malagnac, Corinne da Silva, Olivier Jaillon, Betina Porcel, Arnaud Couloux, Jean-Marc Aury, Béatrice Ségurens, Julie Poulain, Véronique Anthouard, Sandrine Grossetete, Hamid Khalili, Evelyne Coppin, Michelle Déquard-Chablat, Marguerite Picard, Véronique Contamine, Sylvie Arnaise, Anne Bourdais, Véronique Berteaux-Lecellier, Daniel Gautheret, Ronald de Vries, Evy Battaglia, Pedro Coutinho, Etienne Gj Danchin, Bernard Henrissat, Riyad El Khoury, Annie Sainsard-Chanet, Antoine Boivin, Bérangère Pinan-Lucarré, Carole Sellem, Robert Debuchy, Patrick Wincker, Jean Weissenbach, Philippe Silar

Genome Biology 9:R77 (2008)10.1186/gb-2008-9-5-r77

Des glycosidases bactériennes pour du sang universel

Gerlind Sulzenbacher, Yves Bourne, Bernard Henrissat

Médecine/Sciences (2007)10.1051/medsci/20072389703

Structural Organization and a Standardized Nomenclature for Plant Endo-1,4- β -Glucanases (Cellulases) of Glycosyl Hydrolase Family 9

Breeanna Urbanowicz, Alan Bennett, Elena del Campillo, Carmen Catalá, Takahisa Hayashi, Bernard Henrissat, Herman Höfte, Simon Mcqueen-Mason, Sara Patterson, Oded Shoseyov, Tuula Teeri, Jocelyn K.C. Rose

Plant Physiology 144:1693-1696 (2007)10.1104/pp.107.102574

Bacterial glycosidases for the production of universal red blood cells

Qiyong P Liu, Gerlind Sulzenbacher, Huaiping Yuan, Eric P Bennett, Greg Pietz, Kristen Saunders, Jean Spence, Edward Nudelman, Steven B Levery, Thayer White, John M Neveu, William S Lane, Yves Bourne, Martin L Olsson, Bernard Henrissat, Henrik Clausen

Nature Biotechnology (2007)10.1038/nbt1298

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

Herman Pel, Johannes de Winde, David Archer, Paul Dyer, Gerald Hofmann, Peter Schaap, Geoffrey Turner, Ronald de Vries, Richard Albang, Kaj Albermann, Mikael Andersen, Jannick Bendtsen, Jacques Benen, Marco van den Berg, Stefaan Breestraat, Mark Caddick, Roland Contreras, Michael Cornell, Pedro Coutinho, Etienne Danchin, Alfons Debets, Peter Dekker, Piet van Dijck, Alard van Dijk, Lubbert Dijkhuizen, Arnold Driessen, Christophe D'Enfert, Steven Geysens, Coenie Goosen, Gert Groot, Piet de Groot, Thomas Guillemette, Bernard Henrissat, Marga Herweijer, Johannes van den Hombergh, Cees van den Hondel, Rene van Der Heijden, Rachel van Der Kaaij, Frans Klis, Harrie Kools, Christian Kubicek, Patricia van Kuyk, Jürgen Lauber, Xin Lu, Marc van den Maarel, Rogier Meulenberg, Hildegard Menke, Martin Mortimer, Jens Nielsen, Stephen Oliver, Maurien Olsthoorn, Karoly Pal, Noël van Peij, Arthur Ram, Ursula Rinas, Johannes Roubos, Cees Sagt, Monika Schmoll, Jibin Sun, David Ussery, János Varga, Wouter Vervecken, Peter van de Vondervoort, Holger Wedler, Han Wösten, An-Ping Zeng, Albert van Ooyen, Jaap Visser, Hein Stam

Nature Biotechnology 25:221-231 (2007)10.1038/nbt1282

Crystal structure of inactivated Thermotoga maritima invertase in complex with the trisaccharide substrate raffinose

Francois Alberto, Emmanuelle Jordi, Bernard Henrissat, Mirjam Czjzek

Biochemical Journal 395:457-462 (2006)10.1042/BJ20051936

Dividing the large glycoside hydrolase family 13 into subfamilies: towards improved functional annotations of alpha-amylase-related proteins

Mark R. Stam, Etienne Danchin, Corinne Rancurel, Pedro M Coutinho, Bernard Henrissat

Protein Engineering, Design and Selection 19:555-562 (2006)10.1093/protein/gzl044

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)

Gerald A. Tuskan, Stephen Difazio, Stefan Jansson, Jörg Bohlmann, Igor Grigoriev, Uffe Hellsten, Nicholas Putnam, Steven Ralph, Stephane Rombauts, Asaf Salamov, Jacquie Schein, Lieven Sterck, Andrea Aerts, Rishikesh Bhalerao, Rupali Bhalerao, Damien Blaudez, Wout Boerjan, Annick Brun-Jacob, Amy Brunner, Victor Busov, Malcolm Campbell, John Carlson, Michel M. Chalot, Jarod Chapman, Gwo-Liang Chen, D. Cooper, Pedro Coutinho, Jérémy Couturier, Sarah Covert, Quentin Cronk, R. Cunningham, John Davis, S. Degroeve, Annabelle Dejardin, Claude Depamphilis, John Detter, Bill Dirks, Inna Dubchak, Sébastien Duplessis, Jürgen Ehlting, Brian Ellis, Karla Gendler, David Goodstein, Michael Gribskov, Jane Grimwood, Andrew Groover, Lee Gunter, Britta Hamberger, Berthold Heinze, Ykä Helariutta, Bernard Henrissat, Dawn Holligan, Robert Holt, Wayne Huang, Nurul Islam-Faridi, Steven Jones, Matthew Jones-Rhoades, Richard Jorgensen, Chandrashekha Joshi, Jaakko Kangasjärvi, Jan Karlsson, Colin Kelleher, Robert Kirkpatrick, Matias Kirst, Annegret Kohler, Udaya Kalluri, Frank Larimer, Jim Leebens-Mack, Jean-Charles Leplé, Philip Locascio, Yunian Lou, Susan Lucas, Francis Martin, Barbara Montanini, Carolyn Napoli, David R Nelson, C. Dana Nelson, Kaisa Nieminen, Ove Nilsson, Veronica Pereda, Gary Peter, Ryan Philippe, Gilles G. Pilate, Alexandre Poliakov, Jane Razumovskaya, Paul Richardson, Cécile Rinaldi, Kermit Ritland, Pierre Rouzé, Dmitriy Ryaboy, Jeremy Schmutz, J. Schrader, Bo Segerman, Heesun Shin, Asim Siddiqui, Fredrik Sterky, Astrid Terry, Chung-Jui Tsai, Edward Uberbacher, Per Unneberg, Jorma Vahala, Kerr Wall, Susan Wessler, Guojun Yang, Tongming Yin, Carl Douglas, Marco Marra, Goran Sandberg, Yves van de Peer, Daniel S. Rokhsar

Science 313:1596-1604 (2006)10.1126/science.1128691

VaZyMolO: a tool to define and classify modularity in viral proteins

François Ferron, Corinne Rancurel, Sonia Longhi, Christian Cambillau, Bernard Henrissat, Bruno Canard

Journal of General Virology 86:743-749 (2005)10.1099/vir.0.80590-0

Evolutionary and mechanistic relationships between glycosidases acting on ??- and ??-bonds

Mark Stam, Eric Blanc, Pedro Coutinho, Bernard Henrissat

Carbohydrate Research 340:2728-34 (2005)10.1016/j.carres.2005.09.018

Protein disorder: conformational distribution of the flexible linker in a chimeric double cellulase.

Von Ossowski I, Eaton Jt, M. Czjzek, Perkins Sj, Frandsen Tp, M. Schulein, P. Panine, Bernard Henrissat, V. Receveur-Brechot

Biophysical Journal 88:2823-2832 (2005)

Carbohydrate-Active Enzymes Involved in the Secondary Cell Wall Biogenesis in Hybrid Aspen

Henrik Aspeborg, Jarmo Schrader, Pedro Coutinho, Mark Stam, Åsa Kallas, Soraya Djerbi, Peter Nilsson, Stuart Denman, Bahram Amini, Fredrik Sterky, Emma Master, Göran Sandberg, Ewa Mellerowicz, Björn Sundberg, Bernard Henrissat, Tuula Teeri

Plant Physiology 137:983-97 (2005)10.1104/pp.104.055087

The Three-dimensional Structure of Invertase (β-Fructosidase) from Thermotoga maritima Reveals a Bimodular Arrangement and an Evolutionary Relationship between Retaining and Inverting Glycosidases

Francois Alberto, Christophe Bignon, Gerlind Sulzenbacher, Bernard Henrissat, Mirjam Czjzek

Journal of Biological Chemistry 279:18903-18910 (2004)10.1074/jbc.M313911200


Gerlind Sulzenbacher, Christophe Bignon, Takeshi Nishimura, Chris A Tarling, Stephen G Withers, Bernard Henrissat, Yves Bourne

Journal of Biological Chemistry (2004)10.1074/jbc.M313783200

Identification of the Catalytic Nucleophile of the Family 29 α-L-Fucosidase from Thermotoga maritima through Trapping of a Covalent Glycosyl-Enzyme Intermediate and Mutagenesis

Chris A Tarling, Shouming He, Gerlind Sulzenbacher, Christophe Bignon, Yves Bourne, Bernard Henrissat, Stephen G Withers

Journal of Biological Chemistry (2003)10.1074/jbc.M306610200

Why are there so many carbohydrate-active enzyme-related genes in plants?

Pedro M Coutinho, Mark Stam, Eric Blanc, Bernard Henrissat

Trends in Plant Science 8:563-5 (2003)

Klotho Is a Novel β-Glucuronidase Capable of Hydrolyzing Steroid β-Glucuronides

Osamu Tohyama, Akihiro Imura, Akiko Iwano, Jean-Noël Freund, Bernard Henrissat, Toshihiko Fujimori, Yo-Ichi Nabeshima

Journal of Biological Chemistry 279:9777-9784 (2003)10.1074/jbc.m312392200

Molecular characterization of a cell wall-associated beta(1-3)endoglucanase of Aspergillus fumigatus.

Isabelle Mouyna, Jacqueline Sarfati, P. Recco, Thierry Fontaine, Bernard Henrissat, Jean-Paul Latgé

Medical Mycology 40:455-64 (2002)10.1080/mmy.40.5.455.464

Optimized mixtures of recombinant Humicola insolens cellulases for the biodegradation of crystalline cellulose

C. Boisset, C. Petrequin, H. Chanzy, Bernard Henrissat, M. Schulein

Biotechnology and Bioengineering 339-345 (2001)

Identification of the catalytic residues of the first family of beta(1-3)glucanosyltransferases identified in fungi

Isabelle Mouyna, Michel Monod, Thierry Fontaine, Bernard Henrissat, Barbara Léchenne, Jean-Paul Latge

Biochemical Journal 347:741-747 (2000)10.1042/bj3470741

Crystal structures of human pancreatic alpha-amylase in complex with carbohydrate and proteinaceous inhibitors.

F Nahoum, G Roux, A Anton, P. Rouge, A Puigserver, B Bischoff, Bernard Henrissat, F. Payan

Biochemical Journal 201-8 (2000)

High resolution X-ray crystallography shows that ascorbate is a cofactor for myrosinase and substitutes for the function of the catalytic base

W.P. Burmeister, S. Cottaz, P. Rollin, A. Vasella, Bernard Henrissat

Journal of Biological Chemistry 39385-39393 (2000)

Digestion of crystalline cellulose substrates by the Clostridium thermocellum cellulosomes: structural and morphological aspects

C. Boisset, H. Chanzy, Bernard Henrissat, R. Lamed, Y. Shoham, E. Bayer

Biochemical Journal 829-835 (1999)

Dynamic light scattering evidence for a lignand-induced motion between the two domains of glucoamylase G1 of Aspergillus niger using heterobivalent substrate analogues

N. Payre, S. Cottaz, C. Boisset, R. Borsali, B. Svensson, Bernard Henrissat, H. Driguez

Angewandte Chemie International Edition 974-977 (1999)

Endogenous cellulases in animals: isolation of β-1,4-endoglucanase genes from two species of plant-parasitic cyst nematodes

G. Smant, J.P. Stokkermans, Y. Yitang, J.M. de Boer, T. Baum, W. Xiaohong, R.S. Jussey, F.J. Gommers, Bernard Henrissat, E.L. Davis, J. Helder, A. Shots, J. Gakker

Proceedings of the National Academy of Sciences of the United States of America 4906-4911 (1998)

The k-carrageenase of the marine bacterium Cytophaga drobachiensis: structural and phylogenetic relationships within family-16 glycoside hydrolases

T. Barbeyron, A. Gerard, P. Potin, Bernard Henrissat, B. Kloareg

Journal of Molecular Evolution 528-537 (1998)

A b(1-3) glucanosyltransferase isolated from the cell wall of Aspergillus fumigatus is an homolog of the yeast BGL2

Isabelle Mouyna, Robert P. Hartland, Thierry Fontaine, Michel Diaquin, Catherine Simenel, Muriel Delepierre, Bernard Henrissat, Jean-Paul Latgé

Microbiology 3171-3180 (1998)10.1099/00221287-144-11-3171

A scheme for designating enzymes that hydrolyse the polysaccharides in the cell-walls of plants

Bernard Henrissat, T.T. Teeri, R.A. Warren

FEBS Letters 352-354 (1998)

Glycosidase families

Bernard Henrissat

Biochem. Soc. Trans. 153-156 (1998)

Structure-function relationships in cellulases: the enzymatic degradation of insoluble cellulose

C. Boisset, S. Armand, S. Drouillard, H. Chanzy, H. Driguez, Bernard Henrissat

124-132 (1998)

Glycosyl hydrolase genes and their use for producing enzymes for the biodegradation of carrageenans

P. Potin, C. Richard, T. Barbeyron, Bernard Henrissat, B. Kloareg, J.C. Yvin


Structural and sequence-based classification of glycoside hydrolases

Bernard Henrissat, G. Davies

Current Opinion in Structural Biology 637-644 (1997)

Deciphering protein sequence information through hydrophobic cluster analysis (HCA): current status and perspectives

I. Callebaut, G. Labesse, P. Durand, A. Poupon, L. Canard, J. Chomilier, Bernard Henrissat, J.P. Mornon

Cellular and Molecular Life Sciences 621-645 (1997)

Nomenclature for sugar-binding subsites in glycosyl hydrolases

G. Davies, K.S. Wilson, Bernard Henrissat

Biochemical Journal 557-559 (1997)

Evidence that galactanase A from Pseudomonas fluorescens subspecies cellulosa is a retaining family 53 glycosyl hydrolase in which E161 and E270 are the catalytic residues

K.L. Braithwaite, T. Barna, T.D. Spurway, S.J. Charnock, G.W. Black, N. Hughes, J.H. Lakey, R. Virden, G.P. Hazlewood, Bernard Henrissat, H.J. Gilbert

Biochemistry 15489-15507 (1997)

Serratia marcescens chitobiase is a retaining glycosidase utilizing substrate acetamido group participation

S. Drouillard, S. Armand, G.J. Davies, C. Vorgias, Bernard Henrissat

Biochemical Journal 945-949 (1997)

A new cellulase family

Bernard Henrissat

Molecular Microbiology 847-849 (1997)

A classification of nucleotide-diphospho-sugar glycosyltransferases based on amino acid sequence similarities

J.A. Campbell, G.J. Davies, V. Bulone, Bernard Henrissat

Biochemical Journal 929-939 (1997)

Parallel-up structure evidences the molecular directionality during biosynthesis of bacterial cellulose

M. Koyama, W. Helbert, T. Imai, J. Sugiyama, Bernard Henrissat

Proceedings of the National Academy of Sciences of the United States of America 9091-9095 (1997)

A bifunctionalized fluorogenic tetrasaccharide as a substrate to study cellulases

S. Armand, S. Drouillard, M. Schulein, Bernard Henrissat, H. Driguez

Journal of Biological Chemistry 2709-2713 (1997)

An ultrastructural study of the interaction of an endoglucanase from Humicola insolens with cotton fibres

C. Boisset, H. Chanzy, M. Schulein, Bernard Henrissat

Cellulose Jul-20 (1997)

Domain evolution in the α-amylase superfamily

S. Janecek, B. Svensson, Bernard Henrissat

Journal of Molecular Evolution 322-331 (1997)

Active-site motifs of lysosomal acid hydrolases: invariant features of clan GH-A of glycosyl hydrolases deduced from hydrophobic cluster analysis

P. Durand, P. Lehn, I. Callebaut, S. Fabrega, Bernard Henrissat, J.P. Mornon

Glycobiology 277-284 (1997)

Identification of candidate active site residues in lysosomal β-hexosaminidase. J. Biol. Chem.

M.J. Fernandes, D. Leclerc, Bernard Henrissat, C.E. Vorgias, R. Gravel, P. Hechtman, F. Kaplan

Journal of Biological Chemistry 814-820 (1997)

Plant chitinase use two different hydrolytic mechanisms

B. Iseli, S. Armand, T. Boller, J.M. Neuhaus, Bernard Henrissat

FEBS Letters 186-188 (1996)

On the classification of modular proteins

Bernard Henrissat, P. Bork

Protein Eng. 725-726 (1996)

Cloning, sequencing and overexpression in Escherichia coli of the alginate lyase-encoding algi gene of Pseudomonas alginivora. Identification of three alginate lyases families

F. Chavagnat, C. Duez, M. Guinand, P. Potin, T. Barbeyron, Bernard Henrissat, J. Wallach, J.M. Ghuysen

Biochemical Journal 575-583 (1996)

Electron microscopic investigation of the diffusion of Bacillus licheniformis α-amylase into corn starch granules

W. Helbert, M. Schulein, Bernard Henrissat

International Journal of Biological Macromolecules 165-169 (1996)

Mechanism-based inhibition and stereochemistry of glucosinolate hydrolysis by myrosinase

S. Cottaz, Bernard Henrissat, H. Driguez

Biochemistry 15256-15259 (1996)

Stereochemical course and reaction products of the action of β-xylosidase form Thermoanaerobacterium saccharolyticum strain B6A-RI

S. Armand, C. Vieille, C. Gey, A. Heyraud, J.G. Zeikus, Bernard Henrissat

European Journal of Biochemistry 706-713 (1996)

A modular family 19 chitinase found in the prokaryotic organism Streptomyces griseus HUT6037

T. Ohno, S. Armand, T. Hata, N. Nikaidou, Bernard Henrissat, M. Mitsutomi, T. Watanabe

Journal of Bacteriology 5065-5070 (1996)

Mannanase A from Pseudomonas fluorescens ssp. cellulosa is a retaining glycosyl hydrolase in which E212 and E320 are the putative catalytic residues

D.N. Bolam, N. Hughes, R. Virden, J.H. Lakey, G.P. Hazlewood, Bernard Henrissat, K.L. Braithwaite, H.J. Gilbert

Biochemistry 16195-16204 (1996)

Towards a classification of glycosyl transferases based on amino acid sequence similarities. Prokaryotic α-mannosyl-transferases

R. Geremia, E. Petroni, L. Ielpi, Bernard Henrissat

Biochemical Journal 133-138 (1996)

Endoglucanase II (EGII) of Penicillium janthinellum: cDNA sequence, heterologous expression and promotor analysis

G. Mernitz, A. Koch, Bernard Henrissat, G. Schultz

Current Genetics 490-195 (1996)

Cloning and characterization of a xylanase gene from corn strains of Erwinia chrysanthemi

N.T. Keen, C. Boyd, Bernard Henrissat

Molecular Plant-Microbe Interactions 651-657 (1996)

Updating the sequence-based classification of glycosyl hydrolases

Bernard Henrissat, A. Bairoch

Biochemical Journal 695-696 (1996)

Multidomain architecture of β-glycosyl transferases: implications for mechanism of action

I.M. Saxena, R.M. Brown, M. Fevre, R. Geremia, Bernard Henrissat

Journal of Bacteriology 1419-1424 (1995)

Structure-based multiple alignment of extracellular pectate lyase sequences

S.E. Heffron, Bernard Henrissat, M.D. Yoder, S.E. Lietzke, F. Jurnak

Molecular Plant-Microbe Interactions 331-334 (1995)

Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases

Bernard Henrissat, I. Callebaut, S. Fabrega, P. Lehn, J.P. Mornon, G. Davies

Proceedings of the National Academy of Sciences of the United States of America 7090-7094 (1995)

The crystal structure of methyl β-cellotrioside monohydrate 0.25 ethanolate and its relationship to cellulose II

S. Raymond, Bernard Henrissat, D. Tran Qui, A. Kvick, H. Chanzy

Carbohydrate Research 209-229 (1995)

Dynamic light scattering study of the two-domain structure of Humicola insolens endoglucanase V

C. Boisset, R. Borsali, M. Schulein, Bernard Henrissat

FEBS Letters 49-52 (1995)

Families, superfamilies and subfamilies of glycosyl hydrolases

Bernard Henrissat, A. Romeu

Biochemical Journal 350-351 (1995)

Stereochemistry of chitin hydrolysis by a plant chitinase/lysozyme and x-ray structure of a complex with allosamidin: evidence for substrate assisted catalysis

A.C. Terwisscha van Scheltinga, S. Armand, K.H. Kalk, A. Isogai, Bernard Henrissat, B.W. Dijkstra

Biochemistry 15619-15623 (1995)

Docking of congo red to the surface of crystalline cellulose using molecular mechanics

S. Woodcock, Bernard Henrissat, J. Sugiyama

Biopolymers 201-210 (1995)

Structure of oligosaccharide-bound forms of the endoglucanase V from Humicola insolens at 1.9 Ang. resolution

G.J. Davies, S.P. Tolley, Bernard Henrissat, C. Hjort, M. Schulein

Biochemistry 16210-16220 (1995)

Family A cellulases: two essential tryptophan residues in endoglucanase III from Trichoderma reesei

R. Macarron, Bernard Henrissat, M. Claeyssens

BBA - Biochimica et Biophysica Acta 187-190 (1995)

Functional implications of structure-based sequence alignment of proteins in the extracellular pectate lyase superfamily.

Bernard Henrissat, S.E. Heffron, M.D. Yoder, S.E. Lietzke, F. Jurnak

Plant Physiology 963-976 (1995)

Cloning and characterization of the BgxA gene from Erwinia chrysanthemi D1 which encodes a β-glucosidase/xylosidase enzyme

S. Vroemen, J. Heldens, C. Boyd, Bernard Henrissat, N.T. Keen

Mol. Gen. Genet. 465-477 (1995)

Structures and mechanisms of glycosyl hydrolases

G. Davies, Bernard Henrissat

Structure 853-859 (1995)

Cloning and expression in Saccharomyces cerevisiae of a Trichoderma reesei β-mannanase gene containing a cellulose binding domain

H. Stalbrand, A. Saloheimo, J. Vehmannpera, Bernard Henrissat, M. Penttila

Applied and Environmental Microbiology 1090-1097 (1995)

Processing and hydrolytic mechanism of cgkA-encoded κ-carrageenase of Alteromonas carrageenovora

P. Potin, C. Richard, T. Barbeyron, Bernard Henrissat, C. Gey, Y. Petillot, E. Forest, O. Dideberg, C. Rochas, B. Kloareg

European Journal of Biochemistry 971-975 (1995)

Visualisation of protein sequences using the two-dimensional hydrophobic Cluster analysis method

M.T. Semetzidis, E. Thoreau, A. Tasso, Bernard Henrissat, I. Callebaut, J.P. Mornon

129-144 (1995)

Cellulases and their interaction with cellulose

Bernard Henrissat

Cellulose 169-196 (1994)

A novel, small endoglucanase gene, egl5, from Trichoderma reesei isolated by expression in yeast

A. Saloheimo, Bernard Henrissat, A.M. Hoffren, O. Teleman, M. Penttila

Molecular Microbiology 219-228 (1994)

Stereochemical course of the hydrolysis reaction catalyzed by chitinases A1 and D from Bacillus circulans WL-12

S. Armand, H. Tomita, A. Heyraud, C. Gey, T. Watanabe, Bernard Henrissat

FEBS Letters 177-180 (1994)

Evidence for a general role for high affinity non-catalytic cellulose binding domains in microbial plant cell wall hydrolases

S.J. Millward-Sadler, D.M. Poole, Bernard Henrissat, G.P. Hazlewood, H.J. Gilbert

Molecular Microbiology 375-382 (1994)

Molecular dissection of a modular xylanase from Cellulomonas fimi

S.J. Millward-Sadler, D.M. Poole, Bernard Henrissat, G.P. Hazlewood, H.J. Gilbert

298-307 (1994)

Stereochemistry, specificity and kinetics of the hydrolysis of reduced cellodextrins by nine cellulases

C. Schou, G. Rasmussen, M.B. Kaltoft, Bernard Henrissat, M. Schülein

European Journal of Biochemistry 947-953. (1993)

Identification of an essential glutamate residue in the active site of endoglucanase III from Trichoderma reesei

R. Macarron, J. van Beeumen, Bernard Henrissat, I. de La Mata, M. Claeyssens

FEBS Letters 137-140 (1993)

Adsorption and interactions of cellobiohydrolase I from Trichoderma reesei on microcrystallinecellulose

L. Kuutti, J. Pere, Bernard Henrissat, H. Chanzy, T. Reinikainen, L. Laaksonen, M. Srisodsuk, T.T. Teeri

391-396 (1993)

Structure-activity relationships in cellulases

M. Claeyssens, Bernard Henrissat, P. Tomme

117-130 (1993)

Comparison of three algorithms for the assignment of secondary structure in proteins: the advantages of a consensus assignment

N. Colloc'H, C. Etchebest, E. Thoreau, Bernard Henrissat, J.P. Mornon

Protein Eng. 377-382 (1993)

MANSEK and SUNHCA. Two interactive programs for the hydrophobic cluster analysis of protein sequences

L. Lemesle-Varloot, C. Gaboriaux, Anne Morgat, G. Pantel, J.P. Mornon, S. Lavaitte, F. Lestang, Bernard Henrissat

Bioinformatics 37-44 (1993)

4-thiocello-oligosaccharides: their synthesis and use as inhibitors of cellulases

C. Schou, G. Rasmussen, M. Schulein, Bernard Henrissat, H. Driguez

Carbohydrate Research 743-752 (1993)

Visualization of the adsoption of a bacterial endo-β-1-4-glucanase and its isolated cellulose-binding domain to crystalline cellulose

N.R. Gilkes, D.G. Kilburn, R.C. Miller, R.A.J. Warren, J. Sugiyama, H. Chanzy, Bernard Henrissat

International Journal of Biological Macromolecules 347-351 (1993)

Characteristics of an exochitinase from Streptomyces olivaceoviridis, its correponding gene putative protein domains and evolutionary relationship to other chitinases

H. Blaak, J. Schellmann, S. Walter, Bernard Henrissat, H. Schrempf

European Journal of Biochemistry 659-669 (1993)

Characterization of the active site and thermostability regions of endoxylanase from Termoanaero bacterium saccharolyticum strain B6A-RI

Y.E. Lee, S.E. Lowe, Bernard Henrissat, J.G. Zeikus

Journal of Bacteriology 5890-5898 (1993)

Influenza B virus neuraminidase can synthesize its own inhibitor

W.P. Burmeister, Bernard Henrissat, C. Bosso, S. Cusack, R.W.H. Ruigrok

Structure 19-26 (1993)

Detection of secondary structure elements in proteins by hydrophobic analysis

S. Woodcock, J.P. Mornon, Bernard Henrissat

Protein Eng. 629-635 (1992)

Stereochemistry of the hydrolysis reaction catalyzed by endoglucanase Z from Erwinia chrysanthemi

F. Barras, I. Bortoli-German, M. Bauzan, J. Rouvier, C. Gey, A. Heyraud, Bernard Henrissat

FEBS Letters 145-148 (1992)

The adsorption of a bacterial cellulase and its two isolated domains to crystalline cellulose

N.R. Gilkes, E. Jervis, Bernard Henrissat, B. Tekant, R.C. Miller, R.A.J. Warren, D.G. Kilburn

Journal of Biological Chemistry 6743-6749 (1992)

Hot melt ink compositions

W.M. Schwarz, R.H. Marchessault, L. Alexandru, Bernard Henrissat


Domains in microbial β-1,4-glycanases : sequence conservation, function and enzyme families

N.R. Gilkes, Bernard Henrissat, D.G. Kilburn, R.C. Miller, R.A.J. Warren

Microbiol. Rev. 303-315 (1991)

Structural and functional relationships in two families of β-1,4-glycanases

N.R. Gilkes, M. Claeyssens, R. Aebersold, Bernard Henrissat, A. Meinke, H.D. Morrison, D.G. Kilburn, R.A. Warren, R.C. Miller

European Journal of Biochemistry 367-377 (1991)

Sequence homology between a β-galactosidase and some β-glucosidases

Bernard Henrissat

Prot. Seq. Data Anal. 61-62 (1991)

Characterization of genes coding for ligninolytic enzymes of the white-rot fungus Phlebia radiata

M. Saloheimo, V. Barajas, M.L. Niku-Paavola, Bernard Henrissat, J. Knowles

631-637 (1990)

CelS : a novel endoglucanase identified from Erwinia carotovora subsp. Carotovora

H.T. Saarilahti, Bernard Henrissat, E.T. Palva

Gene 9-14 (1990)

Comparison of Trichoderma cellulases with other β-glycanases

Bernard Henrissat, J.P. Mornon

12-29 (1990)

Weak sequence homologies among chitinases detected by clustering analysis

Bernard Henrissat

Protein Seq. Data Anal. 523-526 (1990)

Hydrophobic cluster analysis : procedures to derive structural and functional information from 2-D-representation of protein sequences

L. Lemesle-Varloot, Bernard Henrissat, C. Gaboriaud, V. Bissery, Anne Morgat, J.P. Mornon

Biochimie 555-574 (1990)

HCABAND : a computer program for the 2D-helical representation of protein sequences

Bernard Henrissat, E. Raimbaud, V. S. Tran, J.P. Mornon

Comput. Appl. Biosci. 3-5 (1990)

HCABAND : A computer program for the 2D-helical representation of protein sequences

Bernard Henrissat, E. Raimbaud, V. Tran, J.P. Mornon

Computer Applications in the Biosciences 6:3-5 (1990)

Nucleotide sequence of the engXCA gene encoding the major endoglucanase of Xanthomonas campestris pv. campestris

C.L. Gough, J.M. Dow, J. Keen, Bernard Henrissat, M.J. Daniels

Gene 53-59 (1990)

Structural homology among the peroxidase enzyme family revealed by hydrophobic cluster analysis

Bernard Henrissat, M. Saloheimo, S. Lavaitte, J.K.C. Knowles

Proteins - Structure, Function and Bioinformatics 251-257 (1990)

Hydrophobic cluster analysis of the primary sequences of a-amylases

E. Raimbaud, A. Buleon, S. Perez, Bernard Henrissat

International Journal of Biological Macromolecules 217-225 (1989)

Hydrophobic cluster analysis of the primary sequences of alpha-amylases

E. Raimbaud, Alain Buleon, Sarah Perez, Bernard Henrissat

International Journal of Biological Macromolecules 11:217-225 (1989)

Cellulase families revealed by hydrophobic cluster analysis

Bernard Henrissat, M. Claeyssens, P. Tomme, L. Lemesle, J.P. Mornon

Gene 83-95 (1989)

Hydrophobic-cluster analysis of plant protein sequences. A domain homology between storage and lipid-transfer proteins

Bernard Henrissat, Yves Popineau, J.C. Kader

Biochemical Journal 255:901-905 (1988)

Possible adsorption sites of cellulases on crystalline cellulose

Bernard Henrissat, B. Vigny, Alain Buleon, Sarah Perez

FEBS Letters 231:177-182 (1988)

Solid state 13C-NMR and electron microscopy study on the reversible transformation cellulose I →cellulose IIII in Valonia.

H. Chanzy, Bernard Henrissat, M. Vincendon, S.F. Tanner, P.S. Belton

Carbohydrate Research 1-11 (1987)

Multidisciplinary approaches to the structures of model compounds for cellulose II.

Bernard Henrissat, S. Perez, I. Tvaroska, W.T. Winter

38-67 (1987)

Multidisciplinary approaches to the structures of model compounds for cellulose II

Bernard Henrissat, Sarah Perez, I. Tvaroska, W.T. Winter


A solid state 13C-NMR study of the cellulose-I-ethylenediamine complex.

Bernard Henrissat, R.H. Marchessault, M.G. Taylor, H. Chanzy

Polym. Commun. 113-115 (1987)

Structural changes of cellulose crystals during the reversible transformation cellulose I<->III1 in Valonia

H. Chanzy, Bernard Henrissat, R. Vuong, J.F. Revol

Holzforschung 25-30 (1986)

Enzymatic breakdown of cellulose crystals

Bernard Henrissat, H. Chanzy

337-347 (1986)

Synergism of cellulases from Trichoderma reesei in the degradation of cellulose.

Bernard Henrissat, H. Driguez, C. Viet, M. Schulein

Bio/technology 722-726 (1985)

Precipitation and crystallization of cellulose doped with dyes.

I. Quenin, Bernard Henrissat

Macromolecular Rapid Communications 737-741 (1985)

Colloidal gold labelling of 1,4-β-D-glucan cellobiohydrolase absorbed on cellulose substrates

H. Chanzy, Bernard Henrissat, R. Vuong

FEBS Letters 193-197 (1984)

Electron microscopy study of the enzymic hydrolysis of Valonia cellulose

H. Chanzy, Bernard Henrissat

Carbohydrate Polymers 161-173 (1983)

The action of 1,4-β-D-glucan cellobiohydrolase on Valonia cellulose microcrystals: an electron microscopic study

H. Chanzy, Bernard Henrissat, R. Vuong, M. Schulein

FEBS Letters 113-118 (1983)

Stereochemistry of the hydrolysis of α,α-trehalose by trehalase using a labelled substrate

J. Defaye, H. Driguez, Bernard Henrissat, E. Bar-Guilloux

Carbohydrate Research 265-273 (1983)

A novel synthesis of 5-thio-D-glucose.

H. Driguez, Bernard Henrissat

Tetrahedron Letters 5061-5062 (1981)

Some recent aspects of the specificity and mechanism of action of trehalases

J. Defaye, H. Driguez, Bernard Henrissat, E. Bar-Guilloux

331-353 (1981)

Main Network

  • Jean-Guy Berrin/Marie-Noëlle Rosso 
    • Biodiversité et Biotechnologie Fongique (BBF), Marseille
  • Francis Martin
    • Interactions Arbres-Microorganismes (IAM), Nancy
  • Gabrielle Potocki-Veronese
    • Toulouse Biotechnology Institute (TBI), Toulouse
  • William Helbert
    • Centre de Recherches sur les Macromolécules Végétales (CERMAV), Grenoble
  • Cécile Hervé/Mirjam Czjzek/etc.
    • Station Biologique de Roscoff
  • David Bolam/Elisabeth Lowe/Fiona Cuskin 
    • Newcastle University, England
  • Gideon Davies/Paul Walton
    • Department of Chemistry, University of York, England
  • James McDonald/Peter Golyshin
    • University of Bangor, Wales
  • Børge Westereng/Philip Pope
    • Norwegian University of Life Sciences, Ås, Norway
  • Marco Moracci
    • Department of Biology, University of Napoli, Italy
  • Jeffrey Gordon 
    • School of Medecine, St. Louis University, USA
  • Igor Grigoriev
    • Joint Genome Institute (JGI), University of California, USA
  • Eric Martens
    • Medical School, University of Michigan, USA
  • Harry Brumer
    • Michael Smith Laboratories, The University of British Columbia, Canada
  • Mario Murakami
    • Brazilian Biorenewables National Laboratory (LNBR) Campinas, Brazil


Current projects: SYNBIOGAS, ODE, BROWNSUGAR, PUL marin, and OXYMIST.