Publications
Collection AFMB dans HAL: ici
2023
Exploring the hemicellulolytic properties and safety of Bacillus paralicheniformis as stepping stone in the use of new fibrolytic beneficial microbes
Serigne Inssa Ngom, Soufiane Maski, Bahia Rached, Taha Chouati, Lydie Oliveira Correia, Catherine Juste, Thierry Meylheuc, Bernard Henrissat, Elmostafa El Fahime, Mohamed Amar, Christel Béra-Maillet
Scientific Reports 13:22785 (2023)10.1038/s41598-023-49724-8
Bioactive glycans in a microbiome-directed food for children with malnutrition
Matthew Hibberd, Daniel Webber, Dmitry Rodionov, Suzanne Henrissat, Robert Chen, Cyrus Zhou, Hannah Lynn, Yi Wang, Hao-Wei Chang, Evan Lee, Janaki Lelwala-Guruge, Marat Kazanov, Aleksandr Arzamasov, Semen Leyn, Vincent Lombard, Nicolas Terrapon, Bernard Henrissat, Juan Castillo, Garret Couture, Nikita Bacalzo, Ye Chen, Carlito Lebrilla, Ishita Mostafa, Subhasish Das, Mustafa Mahfuz, Michael Barratt, Andrei Osterman, Tahmeed Ahmed, Jeffrey Gordon
Nature 625:157-165 (2023)10.1038/s41586-023-06838-3
Bioactive glycans in a microbiome-directed food for children with malnutrition
Matthew Hibberd, Daniel Webber, Dmitry Rodionov, Suzanne Henrissat, Robert Chen, Cyrus Zhou, Hannah Lynn, Yi Wang, Hao-Wei Chang, Evan Lee, Janaki Lelwala-Guruge, Marat Kazanov, Aleksandr Arzamasov, Semen Leyn, Vincent Lombard, Nicolas Terrapon, Bernard Henrissat, Juan Castillo, Garret Couture, Nikita Bacalzo, Ye Chen, Carlito Lebrilla, Ishita Mostafa, Subhasish Das, Mustafa Mahfuz, Michael Barratt, Andrei Osterman, Tahmeed Ahmed, Jeffrey Gordon
Nature 625:157-165 (2023)10.1038/s41586-023-06838-3
Bioactive glycans in a microbiome-directed food for children with malnutrition
Matthew Hibberd, Daniel Webber, Dmitry Rodionov, Suzanne Henrissat, Robert Chen, Cyrus Zhou, Hannah Lynn, Yi Wang, Hao-Wei Chang, Evan Lee, Janaki Lelwala-Guruge, Marat Kazanov, Aleksandr Arzamasov, Semen Leyn, Vincent Lombard, Nicolas Terrapon, Bernard Henrissat, Juan Castillo, Garret Couture, Nikita Bacalzo, Ye Chen, Carlito Lebrilla, Ishita Mostafa, Subhasish Das, Mustafa Mahfuz, Michael Barratt, Andrei Osterman, Tahmeed Ahmed, Jeffrey Gordon
Nature 625:157-165 (2023)10.1038/s41586-023-06838-3
Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi
Yogesh K Gupta, Francismar C Marcelino-Guimarães, Cécile Lorrain, Andrew Farmer, Sajeet Haridas, Everton Geraldo Capote Ferreira, Valéria S Lopes-Caitar, Liliane Santana Oliveira, Emmanuelle Morin, Stephanie Widdison, Connor Cameron, Yoshihiro Inoue, Kathrin Thor, Kelly Robinson, Elodie Drula, Bernard Henrissat, Kurt Labutti, Aline Mara Rudsit Bini, Eric Paget, Vasanth Singan, Christopher Daum, Cécile Dorme, Milan van Hoek, Antoine Janssen, Lucie Chandat, Yannick Tarriotte, Jake Richardson, Bernardo Do Vale Araújo Melo, Alexander H J Wittenberg, Harrie Schneiders, Stephane Peyrard, Larissa Goulart Zanardo, Valéria Cristina Holtman, Flavie Coulombier-Chauvel, Tobias I Link, Dirk Balmer, André N Müller, Sabine Kind, Stefan Bohnert, Louisa Wirtz, Cindy Chen, Mi Yan, Vivian Ng, Pierrick Gautier, Maurício Conrado Meyer, Ralf Thomas Voegele, Qingli Liu, Igor V Grigoriev, Uwe Conrath, Sérgio H Brommonschenkel, Marco Loehrer, Ulrich Schaffrath, Catherine Sirven, Gabriel Scalliet, Sébastien Duplessis, H. Peter van Esse
Nature Communications 14:1835 (2023)10.1038/s41467-023-37551-4
Stable functional structure despite high taxonomic variability across fungal communities in soils of old-growth montane forests
Qingchao Zeng, Annie Lebreton, Lucas Auer, Xiaowu Man, Liukun Jia, Gengshen Wang, Sai Gong, Vincent Lombard, Marc Buée, Gang Wu, Yucheng Dai, Zhuliang Yang, Francis M Martin
Microbiome 11:217 (2023)10.1186/s40168-023-01650-7
Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes
Matus Valach, Sandrine Moreira, Celine Petitjean, Corinna Benz, Anzhelika Butenko, Olga Flegontova, Anna Nenarokova, Galina Prokopchuk, Tom Batstone, Pascal Lapébie, Lionnel Lemogo, Matt Sarrasin, Paul Stretenowich, Pragya Tripathi, Euki Yazaki, Takeshi Nara, Bernard Henrissat, B Franz Lang, Michael Gray, Tom Williams, Julius Lukeš, Gertraud Burger
BMC Biology 21:99 (2023)10.1186/s12915-023-01563-9
Structural and mechanistic insights into the inhibition of respiratory syncytial virus polymerase by a non-nucleoside inhibitor
Xiaodi Yu, Pravien Abeywickrema, Brecht Bonneux, Ishani Behera, Brandon Anson, Edgar Jacoby, Amy Fung, Suraj Adhikary, Anusarka Bhaumik, Rodrigo Carbajo, Suzanne de Bruyn, Robyn Miller, Aaron Patrick, Quyen Pham, Madison Piassek, Nick Verheyen, Afzaal Shareef, Priscila Sutto-Ortiz, Nina Ysebaert, Herman van Vlijmen, Tim Jonckers, Florence Herschke, Jason Mclellan, Etienne Decroly, Rachel Fearns, Sandrine Grosse, Dirk Roymans, Sujata Sharma, Peter Rigaux, Zhinan Jin
Communications Biology 6:1074 (2023)10.1038/s42003-023-05451-4
Structural basis of Ty1 integrase tethering to RNA polymerase III for targeted retrotransposon integration
Phong Quoc Nguyen, Sonia Huecas, Amna Asif-Laidin, Adrián Plaza-Pegueroles, Beatrice Capuzzi, Noé Palmic, Christine Conesa, Joël Acker, Juan Reguera, Pascale Lesage, Carlos Fernández-Tornero
Nature Communications 14:1729 (2023)10.1038/s41467-023-37109-4
Internal RNA 2′-O-methylations on HIV-1 genome impair reverse transcription.
Alice Decombe, Olve Peersen, Priscila Sutto-Ortiz, Célia Chamontin, Géraldine Piorkowski, Bruno Canard, Sébastien Nisole, Etienne Decroly
Nucleic Acids Research (2023)
ADDovenom: Thermostable Protein-Based ADDomer Nanoparticles as New Therapeutics for Snakebite Envenoming
Stefanie Menzies, Raquel Arinto-Garcia, Fernanda Gobbi Amorim, Iara Aimê Cardoso, Camille Abada, Thomas Crasset, Fabien Durbesson, Rebecca Edge, Priscila El-Kazzi, Sophie Hall, Damien Redureau, Richard Stenner, Johara Boldrini-França, Huan Sun, António Roldão, Paula Alves, Robert Harrison, Renaud Vincentelli, Imre Berger, Loïc Quinton, Nicholas Casewell, Christiane Schaffitzel
Toxins 15:673 (2023)10.3390/toxins15120673
Internal RNA 2′- O -methylation on the HIV-1 genome impairs reverse transcription
Alice Decombe, Olve Peersen, Priscila Sutto-Ortiz, Célia Chamontin, Géraldine Piorkowski, Bruno Canard, Sébastien Nisole, Etienne Decroly
Nucleic Acids Research (2023)10.1093/nar/gkad1134
Hadza Prevotella require diet-derived microbiota-accessible carbohydrates to persist in mice
Rebecca Gellman, Matthew Olm, Nicolas Terrapon, Fatima Enam, Steven Higginbottom, Justin Sonnenburg, Erica Sonnenburg
Cell Reports 42:113233 (2023)10.1016/j.celrep.2023.113233
DisProt in 2024: improving function annotation of intrinsically disordered proteins
Maria Cristina Aspromonte, Maria Victoria Nugnes, Federica Quaglia, Adel Bouharoua, Vasileios Sagris, Vasilis Promponas, Anastasia Chasapi, Erzsébet Fichó, Galo Balatti, Gustavo Parisi, Martín González Buitrón, Gabor Erdos, Matyas Pajkos, Zsuzsanna Dosztányi, Laszlo Dobson, Alessio Del Conte, Damiano Clementel, Edoardo Salladini, Emanuela Leonardi, Fatemeh Kordevani, Hamidreza Ghafouri, Luiggi Ku, Alexander Miguel Monzon, Carlo Ferrari, Zsófia Kálmán, Juliet Nilsson, Jaime Santos, Carlos Pintado-Grima, Salvador Ventura, Veronika Ács, Rita Pancsa, Mariane Goncalves Kulik, Miguel Andrade-Navarro, Pedro José Barbosa Pereira, Sonia Longhi, Philippe Le Mercier, Julian Bergier, Peter Tompa, Tamas Lazar, Silvio C E Tosatto, Damiano Piovesan
Nucleic Acids Research (2023)10.1093/nar/gkad928
Condensation of the N-terminal domain of human topoisomerase 1 is driven by electrostatic interactions and tuned by its charge distribution
Greta Bianchi, Marco Mangiagalli, Diletta Ami, Junaid Ahmed, Silvia Lombardi, Sonia Longhi, Antonino Natalello, Peter Tompa, Stefania Brocca
International Journal of Biological Macromolecules 254:127754 (2023)10.1016/j.ijbiomac.2023.127754
Tick‐borne flavivirus NS5 antagonizes interferon signaling by inhibiting the catalytic activity of TYK2
Ségolène Gracias, Maxime Chazal, Alice Decombe, Yves Unterfinger, Adrià Sogues, Lauryne Pruvost, Valentine Robert, Sandrine Lacour, Manon Lemasson, Marion Sourisseau, Zhi Li, Jennifer Richardson, Sandra Pellegrini, Etienne Decroly, Vincent Caval, Nolwenn Jouvenet
EMBO Reports 24:e57424 (2023)10.15252/embr.202357424
In vitro generated antibodies guide thermostable ADDomer nanoparticle design for nasal vaccination and passive immunization against SARS-CoV-2
Dora Buzas, Adrian Bunzel, Oskar Staufer, Emily Milodowski, Grace Edmunds, Joshua Bufton, Beatriz Vidana Mateo, Sathish Yadav, Kapil Gupta, Charlotte Fletcher, Maia Williamson, Alexandra Harrison, Ufuk Borucu, Julien Capin, Ore Francis, Georgia Balchin, Sophie Hall, Mirella Vega, Fabien Durbesson, Srikanth Lingappa, Renaud Vincentelli, Joe Roe, Linda Wooldridge, Rachel Burt, Ross Anderson, Adrian Mulholland, Jonathan Hare, Mick Bailey, Andrew Davidson, Adam Finn, David Morgan, Jamie Mann, Joachim Spatz, Frederic Garzoni, Christiane Schaffitzel, Imre Berger
Antibody Therapeutics 6:277-297 (2023)10.1093/abt/tbad024
A gut meta-interactome map reveals modulation of human immunity by microbiome effectors
Veronika Young, Bushra Dohai, Thomas Hitch, Patrick Hyden, Benjamin Weller, Niels van Heusden, Deeya Saha, Jaime Fernandez Macgregor, Sibusiso Maseko, Chung-Wen Lin, Mégane Boujeant, Sébastien Choteau, Franziska Ober, Patrick Schwehn, Simin Rothballer, Melina Altmann, Stefan Altmann, Alexandra Strobel, Michael Rothballer, Marie Tofaute, Matthias Heinig, Thomas Clavel, Jean-Claude Twizere, Renaud Vincentelli, Marianne Boes, Daniel Krappmann, Claudia Falter, Thomas Rattei, Christine Brun, Andreas Zanzoni, Pascal Falter-Braun
BioRxiv (2023)10.1101/2023.09.25.559292
Inducible CRISPR-targeted “knockdown” of human gut Bacteroides in gnotobiotic mice discloses glycan utilization strategies
Zachary Beller, Darryl Wesener, Timothy Seebeck, Janaki Guruge, Alexandra Byrne, Suzanne Henrissat, Nicolas Terrapon, Bernard Henrissat, Dmitry Rodionov, Andrei Osterman, Chris Suarez, Nikita Bacalzo, Ye Chen, Garret Couture, Carlito Lebrilla, Zhigang Zhang, Erik Eastlund, Caitlin Mccann, Gregory Davis, Jeffrey Gordon
Proceedings of the National Academy of Sciences of the United States of America 120:e2311422120 (2023)10.1073/pnas.2311422120
The Ustilago maydis AA10 LPMO is active on fungal cell wall chitin
Roseline Assiah Yao, Jean-Lou Reyre, Ketty Tamburrini, Mireille Haon, Olivier Tranquet, Akshay Nalubothula, Saumashish Mukherjee, Sophie Le Gall, Sacha Grisel, Sonia Longhi, Jogi Madhuprakash, Bastien Bissaro, Jean-Guy Berrin
Applied and Environmental Microbiology 89 (2023)10.1128/aem.00573-23
Novel laminarin-binding CBMs in multimodular proteins of marine Bacteroidota feature prominently in phytoplankton blooms
Marie-Katherin Zühlke, Elizabeth Ficko-Blean, Daniel Bartosik, Nicolas Terrapon, Alexandra Jeudy, Murielle Jam, Fengqing Wang, Norma Welsch, Robert Larocque, Diane Jouanneau, Tom Eisenack, François Thomas, Anke Trautwein-Schult, Hanno Teeling, Dörte Becher, Thomas Schweder, Mirjam Czjzek
BioRxiv (2023)10.1101/2023.09.07.556657
Obituary - Hervé Paul Marie Antoine ROCHAT 1937–2023
Marie-France Martin-Eauclaire, Pascale Marchot
Toxicon 233:107249 (2023)10.1016/j.toxicon.2023.107249
The ESTHER database on alpha/beta hydrolase fold proteins - An overview of recent developments
Arnaud Chatonnet, Michel Perochon, Eric Velluet, Pascale Marchot
Chemico-Biological Interactions 383:110671 (2023)10.1016/j.cbi.2023.110671
Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria
Neha Sahu, Boris Indic, Johanna Wong-Bajracharya, Zsolt Merényi, Huei-Mien Ke, Steven Ahrendt, Tori-Lee Monk, Sándor Kocsubé, Elodie Drula, Anna Lipzen, Balázs Bálint, Bernard Henrissat, Bill Andreopoulos, Francis Martin, Christoffer Bugge Harder, Daniel Rigling, Kathryn Ford, Gary Foster, Jasmyn Pangilinan, Alexie Papanicolaou, Kerrie Barry, Kurt Labutti, Máté Virágh, Maxim Koriabine, Mi Yan, Robert Riley, Simang Champramary, Krista Plett, Igor Grigoriev, Isheng Jason Tsai, Jason Slot, György Sipos, Jonathan Plett, László Nagy
Nature Microbiology 8:1668-1681 (2023)10.1038/s41564-023-01448-1
Viral Instant Mutation Viewer (VIMVer) : a tool to speed up the identification and analysis of new SARS-CoV2 emerging variant and beyond
Vincent Wilde, Bruno Canard, François Ferron
Viruses 15:1628 (2023)10.3390/v15081628
BoGH13ASus from Bacteroides ovatus represents a novel α-amylase used for Bacteroides starch breakdown in the human gut
Haley Brown, Anna Deveaux, Brock Juliano, Amanda Photenhauer, Matthieu Boulinguiez, Russell Bornschein, Zdzislaw Wawrzak, Brandon Ruotolo, Nicolas Terrapon, Nicole Koropatkin
Cellular and Molecular Life Sciences 80:232 (2023)10.1007/s00018-023-04812-w
Role of the Solute-Binding Protein CuaD in the Signaling and Regulating Pathway of Cellobiose and Cellulose Utilization in Ruminiclostridium cellulolyticum
Aurélie Fosses, Nathalie Franche, Goetz Parsiegla, Yann Denis, Maria Maté, Pascale de Philip, Henri-Pierre Fierobe, Stéphanie Perret
Microorganisms 11:1732 (2023)10.3390/microorganisms11071732
Protéine 2C d’Entérovirus : protéine clé de la réplication virale et cible antivirale
Priscila El Kazzi, Carole Yaacoub, Ziad Fajloun, Patrice Vanelle, Etienne Decroly, Bruno Coutard, Karine Barral
Virologie 27:173-188 (2023)10.1684/vir.2023.1001
Structures of active Hantaan virus polymerase uncover the mechanisms of Hantaviridae genome replication
Quentin Durieux Trouilleton, Sergio Barata-García, Benoît Arragain, Juan Reguera, Hélène Malet
Nature Communications 14:2954 (2023)10.1038/s41467-023-38555-w
Adenovirus core protein V reinforces the capsid and enhances genome release from disrupted particles
Natalia Martín-González, Alfonso Gómez-González, Mercedes Hernando-Pérez, Michael Bauer, Urs Greber, Carmen San Martín, Pedro de Pablo
Science Advances 9 (2023)10.1126/sciadv.ade9910
An OMA1 redox site controls mitochondrial homeostasis, sarcoma growth, and immunogenicity
Richard Miallot, Virginie Millet, Yann Groult, Angelika Modelska, Lydie Crescence, Sandrine Roulland, Sandrine Henri, Bernard Malissen, Nicolas Brouilly, Laurence Panicot-Dubois, Renaud Vincentelli, Gerlind Sulzenbacher, Pascal Finetti, Aurélie Dutour, Jean-Yves Blay, François Bertucci, Franck Galland, Philippe Naquet
Life Science Alliance 6 (2023)10.26508/lsa.202201767
Structural basis and dynamics of Chikungunya alphavirus RNA capping by nsP1 capping pores
Rhian Jones, Michael Hons, Nadia Rabah, Noelia Zamarreño, Rocío Arranz, Juan Reguera
Proceedings of the National Academy of Sciences of the United States of America 120 (2023)10.1073/pnas.2213934120
Discovery of a PDZ Domain Inhibitor Targeting the Syndecan/Syntenin Protein–Protein Interaction: A Semi-Automated “Hit Identification-to-Optimization” Approach
Laurent Hoffer, Manon Garcia, Raphael Leblanc, Mikael Feracci, Stéphane Betzi, Khaoula Ben Yaala, Avais Daulat, Pascale Zimmermann, Philippe Roche, Karine Barral, Xavier Morelli
Journal of Medicinal Chemistry (2023)10.1021/acs.jmedchem.2c01569
A global phylogenomic analysis of the shiitake genus Lentinula
Sean Sierra-Patev, Byoungnam Min, Miguel Naranjo-Ortiz, Brian Looney, Zachary Konkel, Jason Slot, Yuichi Sakamoto, Jacob Steenwyk, Antonis Rokas, Juan Carro, Susana Camarero, Patricia Ferreira, Gonzalo Molpeceres, Francisco Ruiz-Dueñas, Ana Serrano, Bernard Henrissat, Elodie Drula, Karen Hughes, Juan Mata, Noemia Kazue Ishikawa, Ruby Vargas-Isla, Shuji Ushijima, Chris Smith, John Donoghue, Steven Ahrendt, William Andreopoulos, Guifen He, Kurt Labutti, Anna Lipzen, Vivian Ng, Robert Riley, Laura Sandor, Kerrie Barry, Angel Martínez, Yang Xiao, John Gibbons, Kazuhisa Terashima, Igor Grigoriev, David Hibbett
Proceedings of the National Academy of Sciences of the United States of America 120:e2214076120 (2023)10.1073/pnas.2214076120
Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus
Jonathan M Plett, Shingo Miyauchi, Emmanuelle Morin, Krista Plett, Johanna Wong-Bajracharya, Maira de Freitas Pereira, Alan Kuo, Bernard Henrissat, Elodie Drula, Dominika Wojtalewicz, Robert Riley, Jasmyn Pangilinan, William Andreopoulos, Kurt Labutti, Chris Daum, Yuko Yoshinaga, Laure Fauchery, Vivian Ng, Anna Lipzen, Kerrie Barry, Vasanth Singan, Jie Guo, Teresa Lebel, Mauricio Dutra Costa, Igor V Grigoriev, Francis Martin, Ian C Anderson, Annegret Kohler
Molecular Biology and Evolution 40:msad045 (2023)10.1093/molbev/msad045
In Vivo Protein–Protein Binding Competition Assay Based on Split-GFP Reassembly: Proof of Concept
Christophe Bignon, Sonia Longhi
Biomolecules 13:354 (2023)10.3390/biom13020354
Interplay of RNA 2′-O-methylations with viral replication
Alice Decombe, Priscila El Kazzi, Etienne Decroly
Current Opinion in Virology 59:101302 (2023)10.1016/j.coviro.2023.101302
Report from the 28th Meeting on Toxinology, “Toxins: What’s up, Doc?”, Organized by the French Society of Toxinology on 28–29 November 2022
Pascale Marchot, Évelyne Benoit, Ziad Fajloun, Sylvie Diochot
Toxins 15:1-25 (2023)10.3390/toxins15020126
Guidelines for the Simulations of Nitroxide X-Band cw EPR Spectra from Site-Directed Spin Labeling Experiments Using SimLabel
Emilien Etienne, Annalisa Pierro, Ketty C Tamburrini, Alessio Bonucci, Elisabetta Mileo, Marlène Martinho, Valérie Belle
Molecules 28:1348 (2023)10.3390/molecules28031348
Design and synthesis of naturally-inspired SARS-CoV-2 inhibitors
Haitham Hassan, Jeanne Chiavaralli, Afnan Hassan, Loay Bedda, Tim Krischuns, Kuang-Yu Chen, Alice Shi Ming Li, Adrien Delpal, Etienne Decroly, Masoud Vedadi, Nadia Naffakh, Fabrice Agou, Sergio Mallart, Reem Arafa, Paola Arimondo
RSC Medicinal Chemistry 14:507-519 (2023)10.1039/D2MD00149G
Biochemistry of the Respiratory Syncytial Virus L Protein Embedding RNA Polymerase and Capping Activities
Priscila Sutto-Ortiz, Jean-François Eléouët, François Ferron, Etienne Decroly
Viruses 15:341 (2023)10.3390/v15020341
Liaisons dangereuses: Intrinsic Disorder in Cellular Proteins Recruited to Viral Infection-Related Biocondensates
Greta Bianchi, Stefania Brocca, Sonia Longhi, Vladimir N Uversky
International Journal of Molecular Sciences 24:2151 (2023)10.3390/ijms24032151
Per Aspera ad Chaos: Vladimir Uversky’s Odyssey through the Strange World of Intrinsically Disordered Proteins
Prakash Kulkarni, Stefania Brocca, A. Keith Dunker, Sonia Longhi
Biomolecules 13:1015 (2023)10.3390/biom13061015
An HMM approach expands the landscape of sesquiterpene cyclases across the kingdom Fungi
Hayat Hage, Julie Couillaud, Asaf Salamov, Margot Loussouarn-Yvon, Fabien Durbesson, Elena Ormeño, Sacha Grisel, Katia Duquesne, Renaud Vincentelli, Igor Grigoriev, Gilles Iacazio, Marie-Noëlle Rosso
Microbial Genomics 9:000990 (2023)10.1099/mgen.0.000990
Molecular Determinants of Fibrillation in a Viral Amyloidogenic Domain from Combined Biochemical and Biophysical Studies
Juliet F Nilsson, Hakima Baroudi, Frank Gondelaud, Giulia Pesce, Christophe Bignon, Denis Ptchelkine, Joseph Chamieh, Hervé Cottet, Andrey V Kajava, Sonia Longhi
International Journal of Molecular Sciences 24:399 (2023)10.3390/ijms24010399
A subfamily classification to choreograph the diverse activities within glycoside hydrolase family 31
Thimali Arumapperuma, Jinling Li, Bastian Hornung, Niccolay Madiedo Soler, Ethan Goddard-Borger, Nicolas Terrapon, Spencer Williams
Journal of Biological Chemistry 299:103038 (2023)10.1016/j.jbc.2023.103038
AT-752 targets multiple sites and activities on the Dengue virus replication enzyme NS5
Mikael Feracci, Cécilia Eydoux, Véronique Fattorini, Lea Lo Bello, Pierre Gauffre, Barbara Selisko, Priscila Sutto-Ortiz, Ashleigh Shannon, Hongjie Xia, Pei-Yong Shi, Mathieu Noel, Françoise Debart, Jean-Jacques Vasseur, Steve Good, Kai Lin, Adel Moussa, Jean-Pierre Sommadossi, Aurélie Chazot, Karine Alvarez, Jean-Claude Guillemot, Etienne Decroly, François Ferron, Bruno Canard
Antiviral Research 212:105574 (2023)10.1016/j.antiviral.2023.105574
In-cell investigation of the conformational landscape of the GTPase UreG by SDSL-EPR
Annalisa Pierro, Ketty C Tamburrini, Hugo Leguenno, Guillaume Gerbaud, Emilien Etienne, Bruno Guigliarelli, Valérie Belle, Barbara Zambelli, Elisabetta Mileo
iScience (2023)10.1016/j.isci.2023.107855
Activity and Crystal Structure of the Adherent-Invasive Escherichia coli Tle3/Tli3 T6SS Effector/Immunity Complex Determined Using an AlphaFold2 Predicted Model
Thi Thu Hang Le, Christine Kellenberger, Marie Boyer, Pierre Santucci, Nicolas Flaugnatti, Eric Cascales, Alain Roussel, Stéphane Canaan, Laure Journet, Christian Cambillau
International Journal of Molecular Sciences 24:1740 (2023)10.3390/ijms24021740
Macro1 domain residue F156: A hallmark of SARS-CoV-2 de-MARylation specificity
Oney Ortega Granda, Karine Alvarez, Maria J Mate-Perez, Bruno Canard, François Ferron, Nadia Rabah
Virology 587:109845 (2023)10.1016/j.virol.2023.109845
Conidium Specific Polysaccharides in Aspergillus fumigatus
Zhonghua Liu, Isabel Valsecchi, Rémy A Le Meur, Catherine Simenel, J. Iñaki Guijarro, Catherine Comte, Laetitia Muszkieta, Isabelle Mouyna, Bernard Henrissat, Vishukumar Aimanianda, Jean-Paul Latgé, Thierry Fontaine
Journal of Fungi 9:155 (2023)10.3390/jof9020155
Amino Acid Polymorphisms on the Brazilian Strain of Yellow Fever Virus Methyltransferase Are Related to the Host’s Immune Evasion Mediated by Type I Interferon
Nathália Dias Furtado, Iasmim Silva de Mello, Andre Schutzer de Godoy, Gabriela Dias Noske, Glaucius Oliva, Bruno Canard, Etienne Decroly, Myrna Bonaldo
Viruses 15:191 (2023)10.3390/v15010191
Structure-guided optimization of adenosine mimetics as selective and potent inhibitors of coronavirus nsp14 N7-methyltransferases
Marcel Hausdorff, Adrien Delpal, Sarah Barelier, Laura Nicollet, Bruno Canard, Franck Touret, Agathe Colmant, Bruno Coutard, Jean-Jacques Vasseur, Etienne Decroly, Françoise Debart
European Journal of Medicinal Chemistry (2023)10.1016/j.ejmech.2023.115474
Taxonomic composition and carbohydrate-active enzyme content in microbial enrichments from pulp mill anaerobic granules after cultivation on lignocellulosic substrates
Mabel T Wong, Camilla L Nesbø, Weijun Wang, Marie Couturier, Vincent Lombard, Pascal Lapebie, Nicolas Terrapon, Bernard Henrissat, Elizabeth A Edwards, Emma R Master
Frontiers in Microbiomes 2:1094865 (2023)10.3389/frmbi.2023.1094865
Minimum information guidelines for experiments structurally characterizing intrinsically disordered protein regions
Bálint Mészáros, András Hatos, Nicolas Palopoli, Federica Quaglia, Edoardo Salladini, Kim van Roey, Haribabu Arthanari, Zsuzsanna Dosztányi, Isabella C Felli, Patrick D Fischer, Jeffrey C Hoch, Cy M Jeffries, Sonia Longhi, Emiliano Maiani, Sandra Orchard, Rita Pancsa, Elena Papaleo, Roberta Pierattelli, Damiano Piovesan, Iva Pritisanac, Luiggi Tenorio, Thibault Viennet, Peter Tompa, Wim Vranken, Silvio C E Tosatto, Norman E Davey
Nature Methods (2023)10.1038/s41592-023-01915-x
2C protein of Enterovirus: key protein of viral replication and antiviral target
Priscila El Kazzi, Carole Yaacoub, Ziad Fajloun, Patrice Vanelle, Etienne Decroly, Bruno Coutard, Karine Barral
Virologie 27:35-49 (2023)10.1684/vir.2023.1002
An objective criterion to evaluate sequence-similarity networks helps in dividing the protein family sequence space
Bastian Volker Helmut Hornung, Nicolas Terrapon
PLoS Computational Biology 19:e1010881 (2023)10.1371/journal.pcbi.1010881
Fluorescence polarisation activity-based protein profiling for the identification of deoxynojirimycin-type inhibitors selective for lysosomal retaining alpha- and beta-glucosidases
Daniël van der Gracht, Rhianna J Rowland, Véronique Roig-Zamboni, Maria J Ferraz, Max Louwerse, Paul P Geurink, Johannes M F G Aerts, Gerlind Sulzenbacher, Gideon J Davies, Herman S Overkleeft, Marta Artola
Chemical Science 14:9136-9144 (2023)10.1039/d3sc01021j
The Human PDZome 2.0: Characterization of a New Resource to Test for PDZ Interactions by Yeast Two-Hybrid
Monica Castro-Cruz, Frédérique Lembo, Jean-Paul Borg, Gilles Travé, Renaud Vincentelli, Pascale Zimmermann
Membranes 13:737 (2023)10.3390/membranes13080737
Viral amyloids: New opportunities for antiviral therapeutic strategies
Frank Gondelaud, Pierre-Yves Lozach, Sonia Longhi
Current Opinion in Structural Biology 83:102706 (2023)10.1016/j.sbi.2023.102706
Light-inducible T cell engagers trigger, tune and shape the activation of primary T cells
Morgane Jaeger, Amandine Anastasio, Léa Chamy, Sophie Brustlein, Renaud Vincentelli, Fabien Durbesson, Julien Gigan, Morgane Thépaut, Rémy Char, Maud Boussand, Mathias Lechelon, Rafael Argüello, Didier Marguet, Hai-Tao He, Rémi Lasserre
Proceedings of the National Academy of Sciences of the United States of America 120:e2302500120 (2023)10.1073/pnas.2302500120
Exogenous zinc mitigates salinity stress by stimulating proline metabolism in proso millet (Panicum miliaceum L.)
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